Wall clock time and date at job start Tue Mar 31 2020 05:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47196 * 2 1 4 4 S 1.80999 * 109.47000 * 239.99720 * 2 1 3 5 5 C 1.76205 * 99.99945 * 65.00603 * 4 2 1 6 6 N 1.31054 * 125.07504 * 0.02562 * 5 4 2 7 7 C 1.35877 * 109.61746 * 179.97438 * 6 5 4 8 8 C 1.39723 * 133.37310 * 180.02562 * 7 6 5 9 9 C 1.37695 * 119.77733 * 179.97438 * 8 7 6 10 10 C 1.38695 * 120.49292 * 0.02562 * 9 8 7 11 11 C 1.37978 * 120.43672 * 359.97438 * 10 9 8 12 12 C 1.38654 * 119.85030 * 0.02562 * 11 10 9 13 13 N 1.36629 * 125.08015 * 180.02562 * 5 4 2 14 14 C 1.46495 * 126.38328 * 0.06308 * 13 5 4 15 15 C 1.50701 * 109.47396 * 89.97485 * 14 13 5 16 16 H 1.08007 * 119.99687 * 0.02562 * 15 14 13 17 17 C 1.37870 * 120.00137 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00208 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00011 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47123 * 59.99905 * 19 17 15 21 21 H 1.48503 * 109.47348 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47326 * 300.00091 * 19 17 15 23 23 C 1.50701 * 109.46934 * 120.00056 * 2 1 3 24 24 O 1.21287 * 119.99881 * 99.99660 * 23 2 1 25 25 N 1.34772 * 120.00131 * 280.00019 * 23 2 1 26 26 C 1.47017 * 125.64702 * 359.69240 * 25 23 2 27 27 C 1.54320 * 107.27612 * 180.96836 * 26 25 23 28 28 C 1.55153 * 102.86352 * 22.52585 * 27 26 25 29 29 C 1.47429 * 125.65039 * 180.02562 * 25 23 2 30 30 H 1.08999 * 109.46963 * 300.00263 * 1 2 3 31 31 H 1.08999 * 109.47108 * 59.99719 * 1 2 3 32 32 H 1.08996 * 109.47196 * 179.97438 * 1 2 3 33 33 H 1.07998 * 120.11630 * 359.97235 * 8 7 6 34 34 H 1.07997 * 119.75101 * 179.72342 * 9 8 7 35 35 H 1.08008 * 119.78023 * 180.02562 * 10 9 8 36 36 H 1.08002 * 120.07390 * 179.97438 * 11 10 9 37 37 H 1.08999 * 109.47138 * 209.97433 * 14 13 5 38 38 H 1.08997 * 109.47183 * 329.97290 * 14 13 5 39 39 H 0.97005 * 119.99909 * 179.97438 * 18 17 15 40 40 H 1.09000 * 109.88463 * 300.51256 * 26 25 23 41 41 H 1.09000 * 109.88861 * 61.67956 * 26 25 23 42 42 H 1.08996 * 110.92228 * 264.11067 * 27 26 25 43 43 H 1.09005 * 110.59129 * 140.78463 * 27 26 25 44 44 H 1.08997 * 111.00739 * 206.22907 * 28 27 26 45 45 H 1.09001 * 111.00474 * 82.37440 * 28 27 26 46 46 H 1.09007 * 110.36337 * 274.67373 * 29 25 23 47 47 H 1.09000 * 110.36404 * 36.88093 * 29 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 16 2.1333 -0.8533 -1.4778 5 6 1.5440 0.2423 -2.7257 6 7 0.8663 1.3418 -2.5038 7 6 0.5726 1.9432 -3.6863 8 6 -0.1137 3.1126 -4.0236 9 6 -0.2499 3.4679 -5.3469 10 6 0.2887 2.6734 -6.3481 11 6 0.9693 1.5156 -6.0314 12 6 1.1160 1.1424 -4.7041 13 7 1.7254 0.0724 -4.0692 14 6 2.4315 -1.0353 -4.7176 15 6 1.4586 -2.1483 -5.0108 16 1 0.4182 -2.0410 -4.7414 17 6 1.8964 -3.3030 -5.6237 18 7 3.1630 -3.4331 -5.9531 19 14 0.6904 -4.6823 -5.9877 20 1 -0.3780 -4.1806 -6.8889 21 1 1.4062 -5.8053 -6.6449 22 1 0.0842 -5.1577 -4.7182 23 6 2.0323 -0.7104 1.2305 24 8 2.4064 -1.8618 1.1558 25 7 2.0658 -0.0665 2.4139 26 6 1.6505 1.3248 2.6444 27 6 1.8878 1.6326 4.1378 28 6 2.9580 0.5840 4.5408 29 6 2.5316 -0.6384 3.6905 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.5360 3.7356 -3.2492 34 1 -0.7844 4.3695 -5.6075 35 1 0.1754 2.9633 -7.3823 36 1 1.3860 0.9011 -6.8157 37 1 2.8763 -0.6868 -5.6496 38 1 3.2157 -1.4032 -4.0560 39 1 3.4711 -4.2457 -6.3840 40 1 2.2460 1.9968 2.0263 41 1 0.5927 1.4401 2.4077 42 1 0.9736 1.4917 4.7143 43 1 2.2727 2.6446 4.2642 44 1 2.9021 0.3580 5.6056 45 1 3.9577 0.9207 4.2664 46 1 1.7222 -1.1784 4.1819 47 1 3.3809 -1.3005 3.5220 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000015981201.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:09 Heat of formation + Delta-G solvation = 38.029365 kcal Electronic energy + Delta-G solvation = -29404.283241 eV Core-core repulsion = 25485.779175 eV Total energy + Delta-G solvation = -3918.504067 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 359.141 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.30429 -40.23035 -37.56053 -36.73251 -34.27181 -33.39294 -32.31144 -31.42032 -29.85755 -29.28754 -28.81212 -27.20276 -25.20610 -23.40177 -23.26866 -22.96600 -21.57576 -21.45942 -20.10630 -19.49174 -17.59210 -17.02535 -16.86190 -16.71383 -16.47480 -15.96955 -15.09466 -14.94418 -14.79589 -14.64635 -14.50728 -13.92625 -13.73446 -13.59517 -13.49936 -13.32867 -13.12278 -12.81700 -12.52623 -12.26010 -12.12609 -11.93623 -11.80746 -11.65344 -11.56459 -11.55644 -11.46022 -11.15779 -11.10933 -10.93531 -10.83758 -10.33113 -10.21544 -9.96376 -9.89074 -9.45876 -9.33603 -8.87563 -8.67434 -8.56999 -7.52113 -6.97719 -6.29101 -4.38033 1.36961 1.41980 2.05864 2.27683 2.53083 2.85353 3.19288 3.23815 3.27487 3.32301 3.67560 4.07533 4.21591 4.28276 4.36024 4.51858 4.56338 4.88528 4.93310 4.94803 5.01383 5.05443 5.13937 5.29965 5.36032 5.36074 5.44723 5.47073 5.51950 5.58202 5.70934 5.77594 5.78353 5.88794 5.89534 5.95112 6.06138 6.11800 6.35397 6.40195 6.75478 6.87322 6.93332 7.04103 7.23106 7.25064 7.36060 7.58801 7.78427 7.80097 7.97671 8.27712 8.66626 9.29637 10.78575 Molecular weight = 359.14amu Principal moments of inertia in cm(-1) A = 0.008926 B = 0.003434 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3136.116720 B = 8152.506512 C =10668.285838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.113 4.113 3 H 0.118 0.882 4 S 0.087 5.913 5 C 0.251 3.749 6 N -0.520 5.520 7 C 0.051 3.949 8 C -0.079 4.079 9 C -0.134 4.134 10 C -0.123 4.123 11 C -0.090 4.090 12 C 0.060 3.940 13 N -0.438 5.438 14 C 0.237 3.763 15 C -0.541 4.541 16 H 0.065 0.935 17 C 0.070 3.930 18 N -0.888 5.888 19 Si 0.905 3.095 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.271 1.271 23 C 0.553 3.447 24 O -0.519 6.519 25 N -0.617 5.617 26 C 0.095 3.905 27 C -0.131 4.131 28 C -0.134 4.134 29 C 0.105 3.895 30 H 0.061 0.939 31 H 0.097 0.903 32 H 0.067 0.933 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.050 0.950 38 H 0.054 0.946 39 H 0.270 0.730 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.077 0.923 46 H 0.069 0.931 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.034 13.062 15.918 20.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.246 4.246 3 H 0.136 0.864 4 S 0.318 5.682 5 C -0.122 4.122 6 N -0.246 5.246 7 C -0.071 4.071 8 C -0.100 4.100 9 C -0.155 4.155 10 C -0.143 4.143 11 C -0.111 4.111 12 C -0.053 4.053 13 N -0.124 5.124 14 C 0.118 3.882 15 C -0.579 4.579 16 H 0.083 0.917 17 C -0.134 4.134 18 N -0.525 5.525 19 Si 0.731 3.269 20 H -0.199 1.199 21 H -0.209 1.209 22 H -0.196 1.196 23 C 0.339 3.661 24 O -0.394 6.394 25 N -0.353 5.353 26 C -0.028 4.028 27 C -0.169 4.169 28 C -0.172 4.172 29 C -0.017 4.017 30 H 0.080 0.920 31 H 0.115 0.885 32 H 0.086 0.914 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.096 0.904 43 H 0.102 0.898 44 H 0.103 0.897 45 H 0.096 0.904 46 H 0.087 0.913 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.169 11.352 16.348 20.021 hybrid contribution -1.022 0.088 -1.058 1.474 sum -3.191 11.440 15.289 19.361 Atomic orbital electron populations 1.22031 0.89876 1.03669 1.04443 1.23402 1.02388 1.04220 0.94590 0.86377 1.86632 1.67089 1.24505 0.89954 1.25400 1.00802 0.97876 0.88163 1.70815 1.20482 1.07362 1.25943 1.19052 1.02345 0.96996 0.88753 1.20045 0.99466 0.94459 0.96023 1.20717 1.02298 1.00289 0.92186 1.20736 0.99848 0.94764 0.98979 1.20067 1.00843 0.97376 0.92846 1.18989 1.00717 0.90516 0.95084 1.45980 1.42639 1.19878 1.03947 1.19845 0.92573 0.81733 0.94006 1.21180 0.95299 1.00097 1.41346 0.91709 1.24899 0.95577 0.98270 0.94648 1.69906 1.14264 1.28169 1.40205 0.86425 0.80714 0.80779 0.78944 1.19943 1.20859 1.19632 1.19487 0.77733 0.86182 0.82661 1.90775 1.47225 1.16731 1.84679 1.48342 1.65177 1.13869 1.07876 1.22159 1.00735 0.82695 0.97219 1.22639 0.99750 0.99981 0.94543 1.22796 0.99387 0.94965 1.00066 1.22245 0.99884 0.96339 0.83227 0.92029 0.88456 0.91425 0.86276 0.86195 0.86001 0.85842 0.93169 0.92819 0.92081 0.90943 0.90794 0.90361 0.89811 0.89681 0.90423 0.91317 0.90130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 8.97 37.16 0.33 -1.67 16 2 C -0.11 -1.73 2.07 -27.88 -0.06 -1.79 16 3 H 0.12 1.66 7.45 -51.92 -0.39 1.27 16 4 S 0.09 1.72 20.24 -107.50 -2.18 -0.46 16 5 C 0.25 5.36 7.64 -88.45 -0.68 4.69 16 6 N -0.52 -10.36 8.64 -10.90 -0.09 -10.46 16 7 C 0.05 1.01 7.22 -84.69 -0.61 0.40 16 8 C -0.08 -1.29 10.10 -39.23 -0.40 -1.69 16 9 C -0.13 -1.93 10.01 -39.61 -0.40 -2.33 16 10 C -0.12 -1.88 10.03 -39.51 -0.40 -2.28 16 11 C -0.09 -1.70 10.04 -39.52 -0.40 -2.10 16 12 C 0.06 1.29 6.87 -83.84 -0.58 0.72 16 13 N -0.44 -10.12 2.82 -115.62 -0.33 -10.45 16 14 C 0.24 6.01 5.69 -5.20 -0.03 5.98 16 15 C -0.54 -14.81 9.39 -34.44 -0.32 -15.13 16 16 H 0.06 1.83 7.81 -52.48 -0.41 1.42 16 17 C 0.07 1.92 5.46 -17.82 -0.10 1.82 16 18 N -0.89 -25.04 13.29 55.43 0.74 -24.30 16 19 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 20 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 23 C 0.55 8.40 7.02 -10.99 -0.08 8.32 16 24 O -0.52 -9.84 16.30 5.55 0.09 -9.75 16 25 N -0.62 -6.99 3.33 -170.53 -0.57 -7.56 16 26 C 0.09 0.76 6.20 -3.07 -0.02 0.74 16 27 C -0.13 -0.71 6.95 -24.90 -0.17 -0.89 16 28 C -0.13 -0.80 7.08 -24.60 -0.17 -0.97 16 29 C 0.11 0.97 6.91 -2.54 -0.02 0.95 16 30 H 0.06 0.69 6.66 -51.93 -0.35 0.34 16 31 H 0.10 1.57 5.86 -51.93 -0.30 1.26 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.12 1.65 8.06 -52.49 -0.42 1.22 16 34 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 35 H 0.12 1.50 8.06 -52.48 -0.42 1.07 16 36 H 0.12 2.32 8.06 -52.49 -0.42 1.89 16 37 H 0.05 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.05 1.42 7.68 -51.93 -0.40 1.02 16 39 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 40 H 0.07 0.57 7.85 -51.93 -0.41 0.16 16 41 H 0.07 0.55 6.74 -51.93 -0.35 0.20 16 42 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 45 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 47 H 0.08 0.84 8.03 -51.93 -0.42 0.42 16 LS Contribution 398.74 15.07 6.01 6.01 Total: -1.00 -32.20 398.74 -12.24 -44.44 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -6.81 Total: 1.46 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: -4.08 Total: -5.23 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: -0.25 Total: -52.77 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.09 Total: -9.75 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: 1.72 SS G_CDS: -2.18 Total: -0.46 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.20 -12.24 -44.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015981201.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.470 kcal (2) G-P(sol) polarization free energy of solvation -32.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds