Wall clock time and date at job start Tue Mar 31 2020 05:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47196 * 2 1 4 4 S 1.80999 * 109.47000 * 239.99720 * 2 1 3 5 5 C 1.76205 * 99.99945 * 65.00603 * 4 2 1 6 6 N 1.31054 * 125.07504 * 0.02562 * 5 4 2 7 7 C 1.35877 * 109.61746 * 179.97438 * 6 5 4 8 8 C 1.39723 * 133.37310 * 180.02562 * 7 6 5 9 9 C 1.37695 * 119.77733 * 179.97438 * 8 7 6 10 10 C 1.38695 * 120.49292 * 0.02562 * 9 8 7 11 11 C 1.37978 * 120.43672 * 359.97438 * 10 9 8 12 12 C 1.38654 * 119.85030 * 0.02562 * 11 10 9 13 13 N 1.36629 * 125.08015 * 180.02562 * 5 4 2 14 14 C 1.46495 * 126.38328 * 0.06308 * 13 5 4 15 15 C 1.50701 * 109.47396 * 89.97485 * 14 13 5 16 16 H 1.08007 * 119.99687 * 0.02562 * 15 14 13 17 17 C 1.37870 * 120.00137 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00208 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00011 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47123 * 59.99905 * 19 17 15 21 21 H 1.48503 * 109.47348 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47326 * 300.00091 * 19 17 15 23 23 C 1.50701 * 109.46934 * 120.00056 * 2 1 3 24 24 O 1.21287 * 119.99881 * 99.99660 * 23 2 1 25 25 N 1.34772 * 120.00131 * 280.00019 * 23 2 1 26 26 C 1.47017 * 125.64702 * 359.69240 * 25 23 2 27 27 C 1.54320 * 107.27612 * 180.96836 * 26 25 23 28 28 C 1.55153 * 102.86352 * 22.52585 * 27 26 25 29 29 C 1.47429 * 125.65039 * 180.02562 * 25 23 2 30 30 H 1.08999 * 109.46963 * 300.00263 * 1 2 3 31 31 H 1.08999 * 109.47108 * 59.99719 * 1 2 3 32 32 H 1.08996 * 109.47196 * 179.97438 * 1 2 3 33 33 H 1.07998 * 120.11630 * 359.97235 * 8 7 6 34 34 H 1.07997 * 119.75101 * 179.72342 * 9 8 7 35 35 H 1.08008 * 119.78023 * 180.02562 * 10 9 8 36 36 H 1.08002 * 120.07390 * 179.97438 * 11 10 9 37 37 H 1.08999 * 109.47138 * 209.97433 * 14 13 5 38 38 H 1.08997 * 109.47183 * 329.97290 * 14 13 5 39 39 H 0.97005 * 119.99909 * 179.97438 * 18 17 15 40 40 H 1.09000 * 109.88463 * 300.51256 * 26 25 23 41 41 H 1.09000 * 109.88861 * 61.67956 * 26 25 23 42 42 H 1.08996 * 110.92228 * 264.11067 * 27 26 25 43 43 H 1.09005 * 110.59129 * 140.78463 * 27 26 25 44 44 H 1.08997 * 111.00739 * 206.22907 * 28 27 26 45 45 H 1.09001 * 111.00474 * 82.37440 * 28 27 26 46 46 H 1.09007 * 110.36337 * 274.67373 * 29 25 23 47 47 H 1.09000 * 110.36404 * 36.88093 * 29 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 16 2.1333 -0.8533 -1.4778 5 6 1.5440 0.2423 -2.7257 6 7 0.8663 1.3418 -2.5038 7 6 0.5726 1.9432 -3.6863 8 6 -0.1137 3.1126 -4.0236 9 6 -0.2499 3.4679 -5.3469 10 6 0.2887 2.6734 -6.3481 11 6 0.9693 1.5156 -6.0314 12 6 1.1160 1.1424 -4.7041 13 7 1.7254 0.0724 -4.0692 14 6 2.4315 -1.0353 -4.7176 15 6 1.4586 -2.1483 -5.0108 16 1 0.4182 -2.0410 -4.7414 17 6 1.8964 -3.3030 -5.6237 18 7 3.1630 -3.4331 -5.9531 19 14 0.6904 -4.6823 -5.9877 20 1 -0.3780 -4.1806 -6.8889 21 1 1.4062 -5.8053 -6.6449 22 1 0.0842 -5.1577 -4.7182 23 6 2.0323 -0.7104 1.2305 24 8 2.4064 -1.8618 1.1558 25 7 2.0658 -0.0665 2.4139 26 6 1.6505 1.3248 2.6444 27 6 1.8878 1.6326 4.1378 28 6 2.9580 0.5840 4.5408 29 6 2.5316 -0.6384 3.6905 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.5360 3.7356 -3.2492 34 1 -0.7844 4.3695 -5.6075 35 1 0.1754 2.9633 -7.3823 36 1 1.3860 0.9011 -6.8157 37 1 2.8763 -0.6868 -5.6496 38 1 3.2157 -1.4032 -4.0560 39 1 3.4711 -4.2457 -6.3840 40 1 2.2460 1.9968 2.0263 41 1 0.5927 1.4401 2.4077 42 1 0.9736 1.4917 4.7143 43 1 2.2727 2.6446 4.2642 44 1 2.9021 0.3580 5.6056 45 1 3.9577 0.9207 4.2664 46 1 1.7222 -1.1784 4.1819 47 1 3.3809 -1.3005 3.5220 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000015981201.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:08 Heat of formation + Delta-G solvation = 20.945717 kcal Electronic energy + Delta-G solvation = -29405.024044 eV Core-core repulsion = 25485.779175 eV Total energy + Delta-G solvation = -3919.244870 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 359.141 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.83433 -41.25436 -38.48480 -38.11260 -36.07634 -34.73468 -34.09798 -32.25982 -31.33388 -30.28574 -29.88540 -29.11349 -26.27792 -25.37609 -24.59066 -24.00745 -22.94152 -22.08434 -21.61566 -20.53310 -18.97496 -18.76556 -18.28521 -18.06397 -17.60900 -17.39552 -16.56263 -16.28715 -16.19583 -15.98596 -15.88650 -14.93673 -14.91934 -14.86378 -14.65325 -14.47276 -14.38399 -14.03932 -13.87320 -13.70205 -13.39181 -13.26454 -13.19588 -13.07409 -12.87417 -12.72512 -12.68336 -12.50352 -12.17893 -12.14981 -12.13048 -12.05483 -11.60276 -11.35953 -11.15981 -11.09418 -10.98456 -10.77690 -10.04469 -9.79303 -9.02682 -8.49669 -8.38719 -6.57330 -0.07150 0.00041 0.68617 0.87756 1.32315 1.35126 1.35650 1.43303 1.66536 1.84616 2.01142 2.30731 2.91250 2.98133 3.20075 3.46046 3.64717 3.71143 3.78461 3.91788 4.06145 4.07361 4.21308 4.24609 4.27857 4.45846 4.46208 4.53285 4.57039 4.67318 4.69139 4.75933 4.82134 4.85827 4.93531 4.94308 4.98791 5.12189 5.14892 5.23706 5.32916 5.37364 5.45612 5.61027 5.63089 5.70872 5.72246 5.99374 6.05596 6.24398 6.50904 6.72428 6.85460 7.14055 8.67415 Molecular weight = 359.14amu Principal moments of inertia in cm(-1) A = 0.008926 B = 0.003434 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3136.116720 B = 8152.506512 C =10668.285838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.091 4.091 3 H 0.132 0.868 4 S 0.026 5.974 5 C 0.238 3.762 6 N -0.504 5.504 7 C 0.026 3.974 8 C -0.077 4.077 9 C -0.118 4.118 10 C -0.100 4.100 11 C -0.125 4.125 12 C 0.026 3.974 13 N -0.459 5.459 14 C 0.258 3.742 15 C -0.553 4.553 16 H 0.049 0.951 17 C 0.026 3.974 18 N -0.916 5.916 19 Si 0.966 3.034 20 H -0.266 1.266 21 H -0.271 1.271 22 H -0.272 1.272 23 C 0.549 3.451 24 O -0.569 6.569 25 N -0.610 5.610 26 C 0.082 3.918 27 C -0.121 4.121 28 C -0.124 4.124 29 C 0.095 3.905 30 H 0.099 0.901 31 H 0.080 0.920 32 H 0.053 0.947 33 H 0.149 0.851 34 H 0.171 0.829 35 H 0.160 0.840 36 H 0.109 0.891 37 H 0.032 0.968 38 H 0.032 0.968 39 H 0.274 0.726 40 H 0.076 0.924 41 H 0.085 0.915 42 H 0.093 0.907 43 H 0.104 0.896 44 H 0.109 0.891 45 H 0.075 0.925 46 H 0.077 0.923 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.405 16.245 17.079 24.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.223 4.223 3 H 0.150 0.850 4 S 0.257 5.743 5 C -0.136 4.136 6 N -0.231 5.231 7 C -0.096 4.096 8 C -0.097 4.097 9 C -0.138 4.138 10 C -0.120 4.120 11 C -0.146 4.146 12 C -0.086 4.086 13 N -0.147 5.147 14 C 0.138 3.862 15 C -0.591 4.591 16 H 0.068 0.932 17 C -0.176 4.176 18 N -0.554 5.554 19 Si 0.790 3.210 20 H -0.191 1.191 21 H -0.195 1.195 22 H -0.197 1.197 23 C 0.335 3.665 24 O -0.449 6.449 25 N -0.343 5.343 26 C -0.040 4.040 27 C -0.158 4.158 28 C -0.162 4.162 29 C -0.027 4.027 30 H 0.117 0.883 31 H 0.099 0.901 32 H 0.072 0.928 33 H 0.167 0.833 34 H 0.188 0.812 35 H 0.178 0.822 36 H 0.127 0.873 37 H 0.050 0.950 38 H 0.050 0.950 39 H 0.083 0.917 40 H 0.094 0.906 41 H 0.103 0.897 42 H 0.111 0.889 43 H 0.122 0.878 44 H 0.127 0.873 45 H 0.094 0.906 46 H 0.095 0.905 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.559 14.615 17.545 23.285 hybrid contribution -0.336 -0.693 -1.395 1.594 sum -4.895 13.922 16.150 21.877 Atomic orbital electron populations 1.21940 0.88861 1.03072 1.05295 1.23375 1.02963 1.03880 0.92079 0.85011 1.86768 1.68110 1.26472 0.92976 1.25483 1.01813 0.98596 0.87659 1.70793 1.19585 1.06622 1.26060 1.19600 1.03566 0.98353 0.88048 1.20533 0.98162 0.93104 0.97933 1.21291 1.00601 1.01078 0.90841 1.21250 0.96779 0.92590 1.01388 1.20266 1.03250 0.99406 0.91672 1.19529 1.01808 0.90616 0.96658 1.45819 1.43900 1.20188 1.04835 1.19277 0.91956 0.82268 0.92687 1.21285 0.94828 1.01258 1.41695 0.93246 1.25718 0.97264 1.00408 0.94213 1.69995 1.15760 1.28980 1.40624 0.85474 0.78733 0.78043 0.78765 1.19084 1.19504 1.19697 1.19435 0.77733 0.85676 0.83646 1.90748 1.49776 1.18810 1.85517 1.48456 1.63414 1.15227 1.07223 1.22520 1.01388 0.80509 0.99567 1.22666 1.00201 1.00673 0.92304 1.22792 0.99466 0.93277 1.00656 1.22501 0.99541 0.97894 0.82772 0.88287 0.90137 0.92792 0.83285 0.81183 0.82243 0.87284 0.95031 0.95015 0.91673 0.90583 0.89702 0.88887 0.87791 0.87279 0.90585 0.90505 0.92115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.76 8.97 71.98 0.65 -3.12 16 2 C -0.09 -2.84 2.07 29.85 0.06 -2.78 16 3 H 0.13 3.71 7.45 -2.40 -0.02 3.69 16 4 S 0.03 1.09 20.24 -56.49 -1.14 -0.05 16 5 C 0.24 10.73 7.64 179.59 1.37 12.10 16 6 N -0.50 -20.45 8.64 -188.41 -1.63 -22.08 16 7 C 0.03 1.02 7.22 39.42 0.28 1.31 16 8 C -0.08 -2.26 10.10 22.50 0.23 -2.03 16 9 C -0.12 -2.84 10.01 22.25 0.22 -2.62 16 10 C -0.10 -2.77 10.03 22.32 0.22 -2.55 16 11 C -0.12 -4.76 10.04 22.31 0.22 -4.54 16 12 C 0.03 1.13 6.87 38.72 0.27 1.40 16 13 N -0.46 -22.66 2.82 -519.70 -1.46 -24.12 16 14 C 0.26 14.16 5.69 85.63 0.49 14.65 16 15 C -0.55 -32.03 9.39 25.60 0.24 -31.79 16 16 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 17 C 0.03 1.45 5.46 84.65 0.46 1.91 16 18 N -0.92 -53.67 13.29 21.44 0.28 -53.39 16 19 Si 0.97 44.78 29.54 68.60 2.03 46.80 16 20 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 21 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 22 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 23 C 0.55 17.18 7.02 87.66 0.62 17.79 16 24 O -0.57 -22.95 16.30 -3.05 -0.05 -23.00 16 25 N -0.61 -13.40 3.33 -811.83 -2.70 -16.10 16 26 C 0.08 1.11 6.20 86.73 0.54 1.64 16 27 C -0.12 -0.87 6.95 31.78 0.22 -0.65 16 28 C -0.12 -1.16 7.08 31.98 0.23 -0.93 16 29 C 0.09 1.67 6.91 86.85 0.60 2.27 16 30 H 0.10 2.01 6.66 -2.39 -0.02 2.00 16 31 H 0.08 2.59 5.86 -2.39 -0.01 2.58 16 32 H 0.05 1.66 8.14 -2.39 -0.02 1.65 16 33 H 0.15 3.45 8.06 -2.91 -0.02 3.42 16 34 H 0.17 2.51 8.06 -2.91 -0.02 2.49 16 35 H 0.16 3.20 8.06 -2.91 -0.02 3.17 16 36 H 0.11 4.34 8.06 -2.91 -0.02 4.31 16 37 H 0.03 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.03 1.85 7.68 -2.39 -0.02 1.83 16 39 H 0.27 15.03 8.31 -92.70 -0.77 14.26 16 40 H 0.08 1.01 7.85 -2.39 -0.02 0.99 16 41 H 0.08 0.99 6.74 -2.39 -0.02 0.98 16 42 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 43 H 0.10 0.42 8.14 -2.38 -0.02 0.40 16 44 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 45 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 47 H 0.06 1.31 8.03 -2.39 -0.02 1.29 16 Total: -1.00 -76.60 398.74 3.22 -73.38 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: 0.98 Total: 16.50 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: 6.92 Total: 2.06 kcal Atomic # 7 Polarization: -110.18 SS G_CDS: -5.51 Total: -115.69 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -0.05 Total: -23.00 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Atomic # 16 Polarization: 1.09 SS G_CDS: -1.14 Total: -0.05 kcal Total: -76.60 3.22 -73.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015981201.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.322 kcal (2) G-P(sol) polarization free energy of solvation -76.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds