Wall clock time and date at job start Tue Mar 31 2020 06:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46509 * 120.00055 * 2 1 4 4 C 1.50699 * 109.46806 * 269.99904 * 3 2 1 5 5 H 1.08001 * 120.00262 * 359.97438 * 4 3 2 6 6 C 1.37875 * 119.99533 * 179.97438 * 4 3 2 7 7 N 1.31516 * 120.00420 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 119.99779 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.46861 * 60.00512 * 8 6 4 10 10 H 1.48503 * 109.47216 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.47313 * 300.00270 * 8 6 4 12 12 C 1.34776 * 119.99921 * 179.97438 * 2 1 3 13 13 O 1.21289 * 119.99925 * 180.02562 * 12 2 1 14 14 C 1.50699 * 120.00335 * 359.97438 * 12 2 1 15 15 N 1.46896 * 109.47494 * 179.97438 * 14 12 2 16 16 C 1.48560 * 111.00435 * 285.42491 * 15 14 12 17 17 C 1.54377 * 104.59694 * 200.95977 * 16 15 14 18 18 C 1.54265 * 105.05993 * 23.84575 * 17 16 15 19 19 C 1.48558 * 111.00311 * 170.00051 * 15 14 12 20 20 H 1.09002 * 110.50680 * 40.21350 * 19 15 14 21 21 C 1.50698 * 110.41131 * 277.82287 * 19 15 14 22 22 C 1.38255 * 119.94767 * 323.66160 * 21 19 15 23 23 C 1.38189 * 120.11422 * 180.32003 * 22 21 19 24 24 C 1.38708 * 120.06772 * 359.40382 * 23 22 21 25 25 C 1.38970 * 119.81940 * 0.22977 * 24 23 22 26 26 C 1.38201 * 119.94223 * 143.37144 * 21 19 15 27 27 O 1.36109 * 120.78743 * 180.21275 * 25 24 23 28 28 C 1.43184 * 116.69245 * 342.71621 * 27 25 24 29 29 C 1.53466 * 108.23540 * 46.24912 * 28 27 25 30 30 O 1.36102 * 119.39604 * 180.08601 * 24 23 22 31 31 H 1.09003 * 109.47423 * 270.00125 * 1 2 3 32 32 H 1.09000 * 109.47392 * 30.00226 * 1 2 3 33 33 H 1.09004 * 109.47225 * 149.99845 * 1 2 3 34 34 H 1.08994 * 109.46647 * 30.00132 * 3 2 1 35 35 H 1.08996 * 109.46730 * 149.99892 * 3 2 1 36 36 H 0.96998 * 119.99747 * 179.97438 * 7 6 4 37 37 H 1.09001 * 109.46567 * 59.99788 * 14 12 2 38 38 H 1.08998 * 109.47377 * 300.00501 * 14 12 2 39 39 H 1.08994 * 110.41267 * 82.17232 * 16 15 14 40 40 H 1.09008 * 110.50891 * 319.78638 * 16 15 14 41 41 H 1.09005 * 110.32235 * 264.95374 * 17 16 15 42 42 H 1.08997 * 110.41412 * 142.78718 * 17 16 15 43 43 H 1.08997 * 110.32709 * 241.10369 * 18 17 16 44 44 H 1.09005 * 110.31781 * 118.89902 * 18 17 16 45 45 H 1.07998 * 119.94172 * 0.03651 * 22 21 19 46 46 H 1.08002 * 119.96900 * 179.68843 * 23 22 21 47 47 H 1.08001 * 119.96475 * 0.02562 * 26 21 19 48 48 H 1.09007 * 109.70358 * 286.56663 * 28 27 25 49 49 H 1.08998 * 109.74582 * 165.95812 * 28 27 25 50 50 H 1.09002 * 109.70461 * 180.56755 * 29 28 27 51 51 H 1.09004 * 109.73789 * 59.97578 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0981 1.0957 -2.2417 6 6 3.1260 2.8779 -1.6727 7 7 3.5533 3.6181 -0.6731 8 14 3.4380 3.4168 -3.4339 9 1 2.1406 3.5936 -4.1346 10 1 4.1804 4.7029 -3.4340 11 1 4.2413 2.3821 -4.1333 12 6 2.1388 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0010 14 6 1.3854 -2.4723 0.0017 15 7 2.3399 -3.5889 0.0014 16 6 2.9653 -3.7545 -1.3359 17 6 3.4830 -5.2089 -1.3459 18 6 2.6164 -5.9499 -0.3068 19 6 1.6480 -4.8810 0.2434 20 1 0.7005 -4.9134 -0.2946 21 6 1.4207 -5.0873 1.7188 22 6 2.3702 -4.6622 2.6294 23 6 2.1683 -4.8556 3.9827 24 6 1.0065 -5.4659 4.4319 25 6 0.0487 -5.8864 3.5170 26 6 0.2608 -5.6958 2.1596 27 8 -1.1004 -6.4835 3.9362 28 6 -1.1087 -6.9945 5.2738 29 6 -0.5155 -5.9245 6.2003 30 8 0.8211 -5.6479 5.7679 31 1 -0.3634 0.0000 1.0277 32 1 -0.3634 0.8899 -0.5139 33 1 -0.3634 -0.8900 -0.5139 34 1 1.6084 2.0283 0.5138 35 1 3.1499 1.1384 0.5138 36 1 4.0301 4.4440 -0.8505 37 1 0.7584 -2.5306 -0.8880 38 1 0.7590 -2.5295 0.8919 39 1 3.7927 -3.0556 -1.4579 40 1 2.2262 -3.6087 -2.1238 41 1 4.5328 -5.2390 -1.0539 42 1 3.3524 -5.6521 -2.3330 43 1 3.2407 -6.3439 0.4951 44 1 2.0591 -6.7558 -0.7845 45 1 3.2732 -4.1823 2.2822 46 1 2.9139 -4.5271 4.6918 47 1 -0.4812 -6.0231 1.4464 48 1 -0.5051 -7.9007 5.3248 49 1 -2.1319 -7.2168 5.5767 50 1 -0.5011 -6.2935 7.2259 51 1 -1.1153 -5.0160 6.1450 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000016339548.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:29 Heat of formation + Delta-G solvation = -63.237246 kcal Electronic energy + Delta-G solvation = -32867.822249 eV Core-core repulsion = 28540.288494 eV Total energy + Delta-G solvation = -4327.533755 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 360.188 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.43270 -39.81613 -38.46208 -37.43670 -37.15344 -34.67356 -32.69593 -32.08239 -31.87383 -30.99210 -29.38266 -28.18944 -27.23948 -26.39936 -25.32428 -24.87519 -22.89642 -22.59815 -21.70647 -20.87448 -20.01490 -18.77240 -18.34195 -17.45208 -17.30456 -16.50619 -16.27085 -16.00349 -15.64783 -15.51588 -15.15560 -14.91961 -14.80964 -14.61992 -14.39756 -14.03257 -13.98755 -13.82258 -13.38276 -13.27952 -13.22368 -12.49782 -12.36572 -12.22737 -12.15724 -11.94432 -11.91289 -11.79351 -11.57952 -11.35422 -11.19300 -11.10525 -11.10066 -10.84871 -10.80940 -10.68335 -10.52775 -10.47566 -10.12109 -9.60353 -8.89194 -8.71185 -8.40430 -8.26879 -8.10120 -7.56148 -6.01045 -4.05835 1.15435 1.25834 2.78840 2.98584 3.33010 3.37586 3.39654 3.54046 3.55083 3.76207 3.93314 4.26829 4.44633 4.46219 4.47937 4.56377 4.64708 4.69893 4.88417 4.96640 5.00653 5.10282 5.13889 5.24556 5.28042 5.31884 5.34043 5.40851 5.44855 5.55209 5.61318 5.69752 5.73098 5.76725 5.83777 5.97498 5.98232 6.04685 6.12352 6.16982 6.23299 6.31192 6.53050 6.58117 6.72180 6.95645 6.97543 7.18282 7.24781 7.50332 7.60908 7.95824 8.27508 8.50239 8.94417 9.20896 9.59199 11.06897 Molecular weight = 360.19amu Principal moments of inertia in cm(-1) A = 0.013728 B = 0.002398 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.122765 B =11675.148306 C =12778.066715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.606 5.606 3 C 0.247 3.753 4 C -0.525 4.525 5 H 0.055 0.945 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.508 3.492 13 O -0.523 6.523 14 C 0.027 3.973 15 N -0.480 5.480 16 C 0.035 3.965 17 C -0.123 4.123 18 C -0.112 4.112 19 C 0.102 3.898 20 H 0.061 0.939 21 C -0.068 4.068 22 C -0.077 4.077 23 C -0.116 4.116 24 C 0.047 3.953 25 C 0.043 3.957 26 C -0.110 4.110 27 O -0.310 6.310 28 C 0.022 3.978 29 C 0.020 3.980 30 O -0.309 6.309 31 H 0.043 0.957 32 H 0.073 0.927 33 H 0.053 0.947 34 H 0.030 0.970 35 H 0.044 0.956 36 H 0.263 0.737 37 H 0.059 0.941 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.040 0.960 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.075 0.925 44 H 0.069 0.931 45 H 0.146 0.854 46 H 0.134 0.866 47 H 0.131 0.869 48 H 0.075 0.925 49 H 0.119 0.881 50 H 0.119 0.881 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.526 -24.017 9.225 27.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.340 5.340 3 C 0.128 3.872 4 C -0.564 4.564 5 H 0.073 0.927 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.202 1.202 12 C 0.293 3.707 13 O -0.398 6.398 14 C -0.105 4.105 15 N -0.204 5.204 16 C -0.093 4.093 17 C -0.161 4.161 18 C -0.150 4.150 19 C -0.006 4.006 20 H 0.078 0.922 21 C -0.069 4.069 22 C -0.095 4.095 23 C -0.135 4.135 24 C 0.002 3.998 25 C -0.001 4.001 26 C -0.129 4.129 27 O -0.224 6.224 28 C -0.054 4.054 29 C -0.055 4.055 30 O -0.224 6.224 31 H 0.062 0.938 32 H 0.092 0.908 33 H 0.072 0.928 34 H 0.048 0.952 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.113 0.887 39 H 0.117 0.883 40 H 0.059 0.941 41 H 0.092 0.908 42 H 0.085 0.915 43 H 0.094 0.906 44 H 0.087 0.913 45 H 0.164 0.836 46 H 0.152 0.848 47 H 0.148 0.852 48 H 0.093 0.907 49 H 0.137 0.863 50 H 0.137 0.863 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.416 -23.699 9.730 27.294 hybrid contribution -0.902 0.293 -1.327 1.631 sum -10.317 -23.406 8.403 26.924 Atomic orbital electron populations 1.21613 0.81738 1.02343 1.00312 1.48147 1.05981 1.07815 1.72068 1.19248 0.92548 0.78045 0.97337 1.21388 1.36497 1.06170 0.92310 0.92663 1.24935 0.95424 0.96423 0.97340 1.69925 1.38372 1.14360 1.30742 0.86575 0.78309 0.77828 0.84782 1.20320 1.21183 1.20200 1.20049 0.88221 0.84514 0.77882 1.90655 1.13535 1.86839 1.48817 1.22226 0.94554 0.91413 1.02266 1.65031 1.26456 1.00399 1.28523 1.23179 0.99987 0.97276 0.88821 1.22308 1.00412 0.94780 0.98610 1.22319 0.97287 0.96653 0.98768 1.21495 0.96771 0.90875 0.91469 0.92155 1.19379 0.93458 0.99055 0.94966 1.20968 1.00233 0.97633 0.90705 1.20531 0.96420 1.00140 0.96409 1.18928 0.96831 1.01757 0.82296 1.18727 0.87940 1.00272 0.93203 1.20207 0.98050 1.02664 0.91974 1.86295 1.32839 1.72644 1.30669 1.23586 1.04117 0.96335 0.81368 1.23600 0.82975 0.99315 0.99649 1.86308 1.28810 1.87141 1.20114 0.93844 0.90816 0.92803 0.95157 0.93819 0.92688 0.92294 0.88731 0.88317 0.94125 0.90768 0.91465 0.90642 0.91259 0.83595 0.84816 0.85152 0.90669 0.86267 0.86265 0.90514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.37 10.24 59.84 0.61 1.98 16 2 N -0.61 -13.12 2.86 -182.95 -0.52 -13.64 16 3 C 0.25 6.59 5.16 -5.19 -0.03 6.56 16 4 C -0.52 -15.02 9.39 -34.44 -0.32 -15.34 16 5 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 7 N -0.89 -26.90 13.29 55.43 0.74 -26.16 16 8 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 C 0.51 10.69 7.52 -10.99 -0.08 10.61 16 13 O -0.52 -13.17 14.81 5.55 0.08 -13.08 16 14 C 0.03 0.42 3.82 -4.98 -0.02 0.40 16 15 N -0.48 -6.99 3.82 -224.94 -0.86 -7.85 16 16 C 0.03 0.49 5.92 -2.18 -0.01 0.48 16 17 C -0.12 -1.34 7.00 -25.35 -0.18 -1.51 16 18 C -0.11 -1.12 6.54 -25.35 -0.17 -1.29 16 19 C 0.10 1.18 2.45 -67.23 -0.16 1.01 16 20 H 0.06 0.64 7.91 -51.93 -0.41 0.23 16 21 C -0.07 -0.80 4.51 -104.63 -0.47 -1.28 16 22 C -0.08 -0.98 9.29 -39.59 -0.37 -1.35 16 23 C -0.12 -1.44 9.96 -39.43 -0.39 -1.84 16 24 C 0.05 0.58 6.49 -39.14 -0.25 0.32 16 25 C 0.04 0.52 6.49 -39.14 -0.25 0.26 16 26 C -0.11 -1.25 9.60 -39.42 -0.38 -1.63 16 27 O -0.31 -3.33 10.42 -32.87 -0.34 -3.67 16 28 C 0.02 0.15 7.26 37.40 0.27 0.42 16 29 C 0.02 0.15 7.26 37.40 0.27 0.42 16 30 O -0.31 -3.48 10.42 -32.85 -0.34 -3.83 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 33 H 0.05 0.72 6.44 -51.93 -0.33 0.38 16 34 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 35 H 0.04 1.31 7.42 -51.93 -0.39 0.93 16 36 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 37 H 0.06 0.82 7.03 -51.93 -0.36 0.46 16 38 H 0.09 1.36 7.75 -51.93 -0.40 0.95 16 39 H 0.10 1.71 7.24 -51.93 -0.38 1.33 16 40 H 0.04 0.55 7.76 -51.92 -0.40 0.15 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.07 0.76 7.81 -51.93 -0.41 0.36 16 44 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.15 2.02 7.63 -52.49 -0.40 1.62 16 46 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 47 H 0.13 1.28 8.05 -52.49 -0.42 0.85 16 48 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.12 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.12 0.49 8.14 -51.93 -0.42 0.07 16 51 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 411.31 15.07 6.20 6.20 Total: -1.00 -34.96 411.31 -10.20 -45.16 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -8.09 Total: -0.01 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -2.03 Total: -0.11 kcal Atomic # 7 Polarization: -47.00 SS G_CDS: -0.65 Total: -47.65 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -0.60 Total: -20.58 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -34.96 -10.20 -45.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016339548.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.079 kcal (2) G-P(sol) polarization free energy of solvation -34.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds