Wall clock time and date at job start Tue Mar 31 2020 06:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46509 * 120.00055 * 2 1 4 4 C 1.50699 * 109.46806 * 269.99904 * 3 2 1 5 5 H 1.08001 * 120.00262 * 359.97438 * 4 3 2 6 6 C 1.37875 * 119.99533 * 179.97438 * 4 3 2 7 7 N 1.31516 * 120.00420 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 119.99779 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.46861 * 60.00512 * 8 6 4 10 10 H 1.48503 * 109.47216 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.47313 * 300.00270 * 8 6 4 12 12 C 1.34776 * 119.99921 * 179.97438 * 2 1 3 13 13 O 1.21289 * 119.99925 * 180.02562 * 12 2 1 14 14 C 1.50699 * 120.00335 * 359.97438 * 12 2 1 15 15 N 1.46896 * 109.47494 * 179.97438 * 14 12 2 16 16 C 1.48560 * 111.00435 * 285.42491 * 15 14 12 17 17 C 1.54377 * 104.59694 * 200.95977 * 16 15 14 18 18 C 1.54265 * 105.05993 * 23.84575 * 17 16 15 19 19 C 1.48558 * 111.00311 * 170.00051 * 15 14 12 20 20 H 1.09002 * 110.50680 * 40.21350 * 19 15 14 21 21 C 1.50698 * 110.41131 * 277.82287 * 19 15 14 22 22 C 1.38255 * 119.94767 * 323.66160 * 21 19 15 23 23 C 1.38189 * 120.11422 * 180.32003 * 22 21 19 24 24 C 1.38708 * 120.06772 * 359.40382 * 23 22 21 25 25 C 1.38970 * 119.81940 * 0.22977 * 24 23 22 26 26 C 1.38201 * 119.94223 * 143.37144 * 21 19 15 27 27 O 1.36109 * 120.78743 * 180.21275 * 25 24 23 28 28 C 1.43184 * 116.69245 * 342.71621 * 27 25 24 29 29 C 1.53466 * 108.23540 * 46.24912 * 28 27 25 30 30 O 1.36102 * 119.39604 * 180.08601 * 24 23 22 31 31 H 1.09003 * 109.47423 * 270.00125 * 1 2 3 32 32 H 1.09000 * 109.47392 * 30.00226 * 1 2 3 33 33 H 1.09004 * 109.47225 * 149.99845 * 1 2 3 34 34 H 1.08994 * 109.46647 * 30.00132 * 3 2 1 35 35 H 1.08996 * 109.46730 * 149.99892 * 3 2 1 36 36 H 0.96998 * 119.99747 * 179.97438 * 7 6 4 37 37 H 1.09001 * 109.46567 * 59.99788 * 14 12 2 38 38 H 1.08998 * 109.47377 * 300.00501 * 14 12 2 39 39 H 1.08994 * 110.41267 * 82.17232 * 16 15 14 40 40 H 1.09008 * 110.50891 * 319.78638 * 16 15 14 41 41 H 1.09005 * 110.32235 * 264.95374 * 17 16 15 42 42 H 1.08997 * 110.41412 * 142.78718 * 17 16 15 43 43 H 1.08997 * 110.32709 * 241.10369 * 18 17 16 44 44 H 1.09005 * 110.31781 * 118.89902 * 18 17 16 45 45 H 1.07998 * 119.94172 * 0.03651 * 22 21 19 46 46 H 1.08002 * 119.96900 * 179.68843 * 23 22 21 47 47 H 1.08001 * 119.96475 * 0.02562 * 26 21 19 48 48 H 1.09007 * 109.70358 * 286.56663 * 28 27 25 49 49 H 1.08998 * 109.74582 * 165.95812 * 28 27 25 50 50 H 1.09002 * 109.70461 * 180.56755 * 29 28 27 51 51 H 1.09004 * 109.73789 * 59.97578 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0981 1.0957 -2.2417 6 6 3.1260 2.8779 -1.6727 7 7 3.5533 3.6181 -0.6731 8 14 3.4380 3.4168 -3.4339 9 1 2.1406 3.5936 -4.1346 10 1 4.1804 4.7029 -3.4340 11 1 4.2413 2.3821 -4.1333 12 6 2.1388 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0010 14 6 1.3854 -2.4723 0.0017 15 7 2.3399 -3.5889 0.0014 16 6 2.9653 -3.7545 -1.3359 17 6 3.4830 -5.2089 -1.3459 18 6 2.6164 -5.9499 -0.3068 19 6 1.6480 -4.8810 0.2434 20 1 0.7005 -4.9134 -0.2946 21 6 1.4207 -5.0873 1.7188 22 6 2.3702 -4.6622 2.6294 23 6 2.1683 -4.8556 3.9827 24 6 1.0065 -5.4659 4.4319 25 6 0.0487 -5.8864 3.5170 26 6 0.2608 -5.6958 2.1596 27 8 -1.1004 -6.4835 3.9362 28 6 -1.1087 -6.9945 5.2738 29 6 -0.5155 -5.9245 6.2003 30 8 0.8211 -5.6479 5.7679 31 1 -0.3634 0.0000 1.0277 32 1 -0.3634 0.8899 -0.5139 33 1 -0.3634 -0.8900 -0.5139 34 1 1.6084 2.0283 0.5138 35 1 3.1499 1.1384 0.5138 36 1 4.0301 4.4440 -0.8505 37 1 0.7584 -2.5306 -0.8880 38 1 0.7590 -2.5295 0.8919 39 1 3.7927 -3.0556 -1.4579 40 1 2.2262 -3.6087 -2.1238 41 1 4.5328 -5.2390 -1.0539 42 1 3.3524 -5.6521 -2.3330 43 1 3.2407 -6.3439 0.4951 44 1 2.0591 -6.7558 -0.7845 45 1 3.2732 -4.1823 2.2822 46 1 2.9139 -4.5271 4.6918 47 1 -0.4812 -6.0231 1.4464 48 1 -0.5051 -7.9007 5.3248 49 1 -2.1319 -7.2168 5.5767 50 1 -0.5011 -6.2935 7.2259 51 1 -1.1153 -5.0160 6.1450 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000016339548.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:27 Heat of formation + Delta-G solvation = -85.967665 kcal Electronic energy + Delta-G solvation = -32868.807914 eV Core-core repulsion = 28540.288494 eV Total energy + Delta-G solvation = -4328.519420 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 360.188 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.21582 -41.02704 -39.83793 -38.20345 -38.11097 -36.48232 -34.74488 -33.29580 -32.68920 -31.80907 -30.18347 -30.04655 -28.14175 -27.74414 -26.98484 -25.62791 -24.51682 -23.71453 -22.63875 -21.87524 -20.84687 -19.95820 -19.55445 -18.68565 -18.25086 -18.16776 -17.61626 -17.29955 -16.78858 -16.55246 -16.33864 -16.30994 -15.88233 -15.75752 -15.35997 -15.27748 -14.82467 -14.73463 -14.65606 -14.48795 -14.11940 -14.04627 -13.72338 -13.62198 -13.44516 -13.28445 -13.08912 -13.00302 -12.78031 -12.71742 -12.52624 -12.49712 -12.26379 -12.18443 -12.05965 -11.96436 -11.71227 -11.65116 -11.45177 -11.31297 -10.64167 -10.53768 -9.58376 -9.41035 -9.37091 -8.97087 -8.21607 -6.36922 0.26405 0.35678 1.35837 1.40563 1.47811 1.91015 2.07243 2.23410 2.31952 2.42028 2.68655 3.07263 3.09789 3.32825 3.62608 3.70166 3.75047 3.87332 3.96695 4.03858 4.09858 4.16878 4.22999 4.25759 4.37651 4.39374 4.42826 4.47122 4.47800 4.60753 4.61704 4.68957 4.71260 4.79611 4.89220 4.93597 5.01094 5.04254 5.08454 5.16552 5.21233 5.23529 5.28389 5.31247 5.56551 5.58161 5.69001 5.83815 5.91453 5.95106 6.05776 6.07257 6.44451 6.71090 6.84007 7.29546 7.56744 8.85236 Molecular weight = 360.19amu Principal moments of inertia in cm(-1) A = 0.013728 B = 0.002398 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.122765 B =11675.148306 C =12778.066715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.615 5.615 3 C 0.262 3.738 4 C -0.540 4.540 5 H 0.053 0.947 6 C 0.006 3.994 7 N -0.930 5.930 8 Si 0.968 3.032 9 H -0.259 1.259 10 H -0.279 1.279 11 H -0.277 1.277 12 C 0.498 3.502 13 O -0.577 6.577 14 C 0.045 3.955 15 N -0.503 5.503 16 C 0.034 3.966 17 C -0.115 4.115 18 C -0.106 4.106 19 C 0.107 3.893 20 H 0.084 0.916 21 C -0.068 4.068 22 C -0.090 4.090 23 C -0.130 4.130 24 C 0.038 3.962 25 C 0.040 3.960 26 C -0.107 4.107 27 O -0.321 6.321 28 C 0.017 3.983 29 C 0.012 3.988 30 O -0.327 6.327 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.091 0.909 34 H 0.020 0.980 35 H -0.005 1.005 36 H 0.267 0.733 37 H 0.086 0.914 38 H 0.112 0.888 39 H 0.054 0.946 40 H 0.050 0.950 41 H 0.064 0.936 42 H 0.090 0.910 43 H 0.070 0.930 44 H 0.098 0.902 45 H 0.126 0.874 46 H 0.133 0.867 47 H 0.152 0.848 48 H 0.080 0.920 49 H 0.154 0.846 50 H 0.152 0.848 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.510 -26.429 8.239 30.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.348 5.348 3 C 0.140 3.860 4 C -0.579 4.579 5 H 0.071 0.929 6 C -0.193 4.193 7 N -0.570 5.570 8 Si 0.792 3.208 9 H -0.184 1.184 10 H -0.204 1.204 11 H -0.203 1.203 12 C 0.286 3.714 13 O -0.456 6.456 14 C -0.086 4.086 15 N -0.228 5.228 16 C -0.094 4.094 17 C -0.153 4.153 18 C -0.144 4.144 19 C -0.001 4.001 20 H 0.101 0.899 21 C -0.068 4.068 22 C -0.108 4.108 23 C -0.148 4.148 24 C -0.007 4.007 25 C -0.005 4.005 26 C -0.126 4.126 27 O -0.236 6.236 28 C -0.058 4.058 29 C -0.062 4.062 30 O -0.243 6.243 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.110 0.890 34 H 0.038 0.962 35 H 0.013 0.987 36 H 0.076 0.924 37 H 0.103 0.897 38 H 0.130 0.870 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.083 0.917 42 H 0.109 0.891 43 H 0.088 0.912 44 H 0.116 0.884 45 H 0.144 0.856 46 H 0.151 0.849 47 H 0.170 0.830 48 H 0.098 0.902 49 H 0.172 0.828 50 H 0.169 0.831 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.460 -26.140 8.759 30.253 hybrid contribution 0.000 1.009 -0.858 1.324 sum -12.460 -25.130 7.901 29.141 Atomic orbital electron populations 1.21895 0.78159 1.03902 1.02307 1.48187 1.08241 1.06393 1.72007 1.18698 0.90927 0.80340 0.95991 1.21650 1.36824 1.06451 0.92932 0.92873 1.25892 0.94927 0.96444 1.02057 1.70056 1.38930 1.14818 1.33164 0.85460 0.78867 0.77349 0.79087 1.18362 1.20369 1.20263 1.21129 0.88003 0.86064 0.76224 1.90626 1.16219 1.87762 1.51016 1.22065 0.94027 0.88413 1.04131 1.64920 1.27292 1.01586 1.28955 1.23090 0.98922 0.98344 0.89034 1.22266 0.99976 0.92800 1.00293 1.22326 0.96966 0.96734 0.98335 1.21573 0.97772 0.89332 0.91416 0.89866 1.19403 0.93413 0.99050 0.94975 1.20838 1.00146 0.98565 0.91263 1.20593 0.97012 1.00808 0.96436 1.19013 0.96830 1.01784 0.83104 1.18875 0.88139 1.00071 0.93454 1.20392 0.97978 1.01984 0.92232 1.86272 1.32128 1.72488 1.32678 1.23924 1.06339 0.95990 0.79532 1.23956 0.81225 0.99677 1.01383 1.86276 1.31290 1.87167 1.19539 0.91578 0.91464 0.89017 0.96165 0.98699 0.92419 0.89672 0.86984 0.92771 0.93164 0.91716 0.89101 0.91167 0.88358 0.85640 0.84918 0.83013 0.90156 0.82826 0.83063 0.90585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.46 10.24 127.77 1.31 3.77 16 2 N -0.62 -27.10 2.86 -851.12 -2.43 -29.53 16 3 C 0.26 14.65 5.16 85.63 0.44 15.09 16 4 C -0.54 -31.79 9.39 25.60 0.24 -31.55 16 5 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 6 C 0.01 0.33 5.46 84.65 0.46 0.79 16 7 N -0.93 -57.56 13.29 21.45 0.28 -57.27 16 8 Si 0.97 45.56 29.54 68.60 2.03 47.58 16 9 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 10 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 11 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 12 C 0.50 21.47 7.52 87.66 0.66 22.13 16 13 O -0.58 -30.91 14.81 -3.06 -0.05 -30.95 16 14 C 0.04 1.33 3.82 85.56 0.33 1.66 16 15 N -0.50 -14.37 3.82 -865.59 -3.31 -17.68 16 16 C 0.03 0.95 5.92 86.45 0.51 1.46 16 17 C -0.12 -2.35 7.00 31.49 0.22 -2.13 16 18 C -0.11 -1.85 6.54 31.49 0.21 -1.65 16 19 C 0.11 2.20 2.45 44.31 0.11 2.30 16 20 H 0.08 1.38 7.91 -2.39 -0.02 1.36 16 21 C -0.07 -1.50 4.51 -19.87 -0.09 -1.59 16 22 C -0.09 -2.33 9.29 22.26 0.21 -2.12 16 23 C -0.13 -3.31 9.96 22.37 0.22 -3.09 16 24 C 0.04 0.91 6.49 22.56 0.15 1.06 16 25 C 0.04 0.88 6.49 22.56 0.15 1.02 16 26 C -0.11 -2.17 9.60 22.37 0.21 -1.95 16 27 O -0.32 -6.07 10.42 -82.57 -0.86 -6.93 16 28 C 0.02 0.18 7.26 72.14 0.52 0.71 16 29 C 0.01 0.15 7.26 72.14 0.52 0.68 16 30 O -0.33 -7.12 10.42 -82.49 -0.86 -7.98 16 31 H 0.07 1.75 8.14 -2.39 -0.02 1.74 16 32 H 0.07 2.17 8.07 -2.39 -0.02 2.15 16 33 H 0.09 2.14 6.44 -2.38 -0.02 2.12 16 34 H 0.02 1.15 8.07 -2.39 -0.02 1.13 16 35 H -0.01 -0.33 7.42 -2.39 -0.02 -0.35 16 36 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 37 H 0.09 2.10 7.03 -2.39 -0.02 2.08 16 38 H 0.11 2.95 7.75 -2.39 -0.02 2.93 16 39 H 0.05 2.00 7.24 -2.39 -0.02 1.98 16 40 H 0.05 1.28 7.76 -2.38 -0.02 1.27 16 41 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 42 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.07 1.32 7.81 -2.39 -0.02 1.30 16 44 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 45 H 0.13 3.74 7.63 -2.91 -0.02 3.71 16 46 H 0.13 3.22 8.06 -2.91 -0.02 3.20 16 47 H 0.15 2.37 8.05 -2.91 -0.02 2.35 16 48 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 49 H 0.15 0.57 8.14 -2.39 -0.02 0.56 16 50 H 0.15 0.81 8.14 -2.39 -0.02 0.79 16 51 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 Total: -1.00 -81.38 411.31 2.11 -79.27 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: 0.92 Total: 16.91 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: 6.38 Total: 6.58 kcal Atomic # 7 Polarization: -99.03 SS G_CDS: -5.45 Total: -104.48 kcal Atomic # 8 Polarization: -44.10 SS G_CDS: -1.77 Total: -45.87 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.58 kcal Total: -81.38 2.11 -79.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016339548.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.696 kcal (2) G-P(sol) polarization free energy of solvation -81.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds