Wall clock time and date at job start Tue Mar 31 2020 06:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99883 * 2 1 4 4 H 1.48501 * 109.47127 * 240.00396 * 3 2 1 5 5 H 1.48497 * 109.47128 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47318 * 120.00268 * 3 2 1 7 7 C 1.37877 * 119.99893 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99538 * 179.97438 * 7 2 1 9 9 C 1.50691 * 120.00301 * 359.97438 * 7 2 1 10 10 S 1.80998 * 109.47442 * 180.02562 * 9 7 2 11 11 C 1.76202 * 100.00341 * 179.97438 * 10 9 7 12 12 N 1.32400 * 119.20404 * 179.97438 * 11 10 9 13 13 C 1.32918 * 121.26053 * 179.97438 * 12 11 10 14 14 C 1.37596 * 119.02101 * 359.79320 * 13 12 11 15 15 C 1.40151 * 118.52576 * 0.31296 * 14 13 12 16 16 C 1.48286 * 120.40755 * 179.76624 * 15 14 13 17 17 C 1.39397 * 120.11315 * 224.73755 * 16 15 14 18 18 C 1.37968 * 119.88591 * 179.97438 * 17 16 15 19 19 C 1.38464 * 120.11410 * 359.97438 * 18 17 16 20 20 Cl 1.73598 * 119.88640 * 179.97438 * 19 18 17 21 21 C 1.38457 * 120.22117 * 0.27658 * 19 18 17 22 22 C 1.37972 * 120.11270 * 359.44697 * 21 19 18 23 23 N 1.32419 * 119.20342 * 0.22987 * 11 10 9 24 24 C 1.50353 * 122.82276 * 180.65279 * 14 13 12 25 25 C 1.52819 * 110.46994 * 342.39792 * 24 14 13 26 26 C 1.53310 * 108.47282 * 50.80005 * 25 24 14 27 27 C 1.50469 * 118.41146 * 179.68779 * 13 12 11 28 28 H 0.97005 * 120.00312 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.47377 * 59.99849 * 9 7 2 30 30 H 1.09000 * 109.47229 * 299.99778 * 9 7 2 31 31 H 1.07996 * 120.05802 * 0.02562 * 17 16 15 32 32 H 1.08005 * 119.94016 * 179.97438 * 18 17 16 33 33 H 1.07997 * 119.94045 * 179.70070 * 21 19 18 34 34 H 1.08005 * 120.05203 * 180.29771 * 22 21 19 35 35 H 1.09001 * 109.30117 * 102.70543 * 24 14 13 36 36 H 1.09000 * 109.30465 * 222.09111 * 24 14 13 37 37 H 1.08993 * 109.63765 * 291.09891 * 25 24 14 38 38 H 1.09001 * 109.63626 * 170.49047 * 25 24 14 39 39 H 1.08998 * 109.63085 * 170.57165 * 26 25 24 40 40 H 1.08991 * 109.63367 * 49.96997 * 26 25 24 41 41 H 1.08997 * 109.30665 * 282.55979 * 27 13 12 42 42 H 1.08994 * 109.30397 * 42.14731 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 16 2.4272 -3.8749 -0.0005 11 6 1.3072 -5.2351 0.0002 12 7 1.7887 -6.4684 -0.0001 13 6 0.9812 -7.5242 0.0010 14 6 -0.3801 -7.3234 0.0068 15 6 -0.8625 -6.0075 0.0046 16 6 -2.3216 -5.7431 0.0055 17 6 -2.8578 -4.7772 -0.8447 18 6 -4.2161 -4.5354 -0.8404 19 6 -5.0464 -5.2505 0.0060 20 17 -6.7546 -4.9409 0.0070 21 6 -4.5181 -6.2072 0.8560 22 6 -3.1618 -6.4606 0.8553 23 7 0.0042 -4.9991 -0.0040 24 6 -1.3706 -8.4544 0.0228 25 6 -0.6986 -9.7595 -0.4019 26 6 0.5746 -9.9440 0.4320 27 6 1.5974 -8.8969 -0.0067 28 1 -0.4851 0.8401 0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6248 -2.5571 0.8897 31 1 -2.2112 -4.2198 -1.5061 32 1 -4.6324 -3.7869 -1.4984 33 1 -5.1693 -6.7590 1.5178 34 1 -2.7514 -7.2106 1.5154 35 1 -1.7726 -8.5670 1.0298 36 1 -2.1862 -8.2288 -0.6643 37 1 -0.4400 -9.7110 -1.4595 38 1 -1.3762 -10.5948 -0.2253 39 1 0.9790 -10.9426 0.2668 40 1 0.3431 -9.8096 1.4885 41 1 1.9436 -9.1309 -1.0134 42 1 2.4444 -8.9154 0.6790 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000016429379.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:51 Heat of formation + Delta-G solvation = 39.701991 kcal Electronic energy + Delta-G solvation = -26397.105763 eV Core-core repulsion = 22685.831635 eV Total energy + Delta-G solvation = -3711.274128 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 360.076 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.18461 -39.18050 -37.09091 -36.65395 -34.28095 -33.19332 -31.83628 -31.26493 -30.35419 -29.58278 -28.58477 -25.30857 -24.12404 -23.30250 -23.10282 -22.67478 -21.44435 -20.09445 -17.91329 -17.62831 -16.94775 -16.23453 -15.83297 -15.60788 -15.23582 -14.76301 -14.69149 -14.43868 -14.20779 -13.92505 -13.67336 -13.60427 -13.53803 -13.21803 -12.83085 -12.51098 -12.37648 -12.16819 -11.89661 -11.72960 -11.70342 -11.49952 -11.15226 -11.06576 -10.95214 -10.88826 -10.85731 -10.60662 -10.25696 -10.03285 -9.66311 -9.43649 -9.27223 -9.16568 -8.88686 -8.64939 -8.57251 -6.93099 -6.20647 -4.27887 0.53611 1.12421 1.18956 1.52048 1.96571 2.06804 3.26493 3.30069 3.30857 3.39046 3.49874 3.88804 4.11065 4.25685 4.33411 4.54457 4.59606 4.66504 4.70932 4.74365 4.81346 5.10893 5.13014 5.15932 5.29141 5.30651 5.34516 5.36455 5.43716 5.54303 5.64713 5.70314 5.77268 5.80769 5.84518 6.02216 6.06947 6.07437 6.11867 6.33909 6.50574 6.61438 7.12249 7.21194 7.24511 7.68788 7.94197 8.25366 8.72958 9.35486 10.89643 Molecular weight = 360.08amu Principal moments of inertia in cm(-1) A = 0.006721 B = 0.003839 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4165.338463 B = 7291.815231 C =11259.938790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.072 3.928 3 Si 0.905 3.095 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.527 4.527 8 H 0.066 0.934 9 C 0.072 3.928 10 S -0.038 6.038 11 C 0.309 3.691 12 N -0.514 5.514 13 C 0.192 3.808 14 C -0.199 4.199 15 C 0.224 3.776 16 C -0.037 4.037 17 C -0.058 4.058 18 C -0.110 4.110 19 C -0.024 4.024 20 Cl -0.073 7.073 21 C -0.116 4.116 22 C -0.086 4.086 23 N -0.502 5.502 24 C -0.067 4.067 25 C -0.121 4.121 26 C -0.118 4.118 27 C -0.069 4.069 28 H 0.267 0.733 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.141 0.859 32 H 0.139 0.861 33 H 0.136 0.864 34 H 0.138 0.862 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.088 0.912 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.165 -19.834 -0.132 21.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.133 4.133 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.566 4.566 8 H 0.084 0.916 9 C -0.076 4.076 10 S 0.201 5.799 11 C -0.064 4.064 12 N -0.232 5.232 13 C 0.044 3.956 14 C -0.208 4.208 15 C 0.073 3.927 16 C -0.038 4.038 17 C -0.077 4.077 18 C -0.128 4.128 19 C -0.051 4.051 20 Cl -0.044 7.044 21 C -0.135 4.135 22 C -0.105 4.105 23 N -0.219 5.219 24 C -0.105 4.105 25 C -0.159 4.159 26 C -0.156 4.156 27 C -0.107 4.107 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.159 0.841 32 H 0.156 0.844 33 H 0.154 0.846 34 H 0.155 0.845 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.106 0.894 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.505 -18.741 -0.146 20.188 hybrid contribution -1.674 0.425 0.037 1.728 sum -9.179 -18.315 -0.109 20.487 Atomic orbital electron populations 1.69964 1.06073 1.27458 1.48505 1.24916 0.94950 0.99093 0.94376 0.86435 0.79460 0.81903 0.79001 1.19845 1.20974 1.19842 1.20610 0.93297 0.88814 1.53926 0.91571 1.21313 0.94235 0.89820 1.02232 1.85839 1.11957 0.94655 1.87409 1.25479 0.91840 0.95923 0.93177 1.68557 1.39584 0.98080 1.16968 1.21197 0.89085 0.95020 0.90309 1.20775 0.95682 0.95545 1.08800 1.20127 0.92695 0.88594 0.91332 1.18442 0.89801 0.97527 0.98069 1.21287 0.94249 0.94588 0.97543 1.21051 0.92899 0.99721 0.99172 1.21060 0.84930 0.99312 0.99813 1.98369 1.12983 1.95171 1.97914 1.20892 0.95182 0.98147 0.99240 1.21240 0.92255 0.99063 0.97931 1.69088 1.02392 1.34513 1.15924 1.20440 0.96269 0.91816 1.02011 1.21602 0.97033 0.96943 1.00282 1.21588 0.95327 0.98393 1.00320 1.20371 0.98583 0.88275 1.03445 0.92367 0.93132 0.93104 0.84139 0.84365 0.84587 0.84457 0.90495 0.90365 0.91471 0.91057 0.90750 0.91374 0.89368 0.89262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.46 13.29 55.43 0.74 -24.72 16 2 C 0.07 1.99 5.46 -17.82 -0.10 1.90 16 3 Si 0.91 21.07 29.54 -169.99 -5.02 16.05 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.53 -14.64 9.13 -34.44 -0.31 -14.95 16 8 H 0.07 1.80 7.71 -52.48 -0.40 1.39 16 9 C 0.07 1.88 4.56 36.00 0.16 2.05 16 10 S -0.04 -0.85 22.17 -107.50 -2.38 -3.23 16 11 C 0.31 6.52 7.85 -91.09 -0.72 5.81 16 12 N -0.51 -9.69 10.26 -9.92 -0.10 -9.80 16 13 C 0.19 2.90 6.62 -82.47 -0.55 2.35 16 14 C -0.20 -2.80 5.73 -104.31 -0.60 -3.40 16 15 C 0.22 3.75 6.39 -82.52 -0.53 3.23 16 16 C -0.04 -0.54 5.07 -104.90 -0.53 -1.07 16 17 C -0.06 -0.84 9.68 -39.25 -0.38 -1.22 16 18 C -0.11 -1.40 9.81 -39.60 -0.39 -1.79 16 19 C -0.02 -0.28 6.32 -39.42 -0.25 -0.53 16 20 Cl -0.07 -0.78 28.95 -51.86 -1.50 -2.28 16 21 C -0.12 -1.22 9.81 -39.60 -0.39 -1.61 16 22 C -0.09 -0.98 7.98 -39.25 -0.31 -1.29 16 23 N -0.50 -10.37 8.99 -9.96 -0.09 -10.46 16 24 C -0.07 -0.65 4.08 -28.14 -0.11 -0.77 16 25 C -0.12 -0.94 5.98 -26.66 -0.16 -1.10 16 26 C -0.12 -0.92 5.97 -26.67 -0.16 -1.08 16 27 C -0.07 -0.73 5.95 -28.10 -0.17 -0.90 16 28 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 29 H 0.05 1.40 8.11 -51.92 -0.42 0.98 16 30 H 0.05 1.43 8.11 -51.91 -0.42 1.01 16 31 H 0.14 2.24 8.06 -52.49 -0.42 1.82 16 32 H 0.14 1.57 8.06 -52.48 -0.42 1.15 16 33 H 0.14 1.10 8.06 -52.49 -0.42 0.67 16 34 H 0.14 1.29 5.81 -52.48 -0.30 0.99 16 35 H 0.08 0.64 6.35 -51.93 -0.33 0.31 16 36 H 0.08 0.75 7.03 -51.93 -0.36 0.38 16 37 H 0.07 0.55 8.10 -51.93 -0.42 0.12 16 38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 41 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 375.27 15.07 5.66 5.66 Total: -1.00 -30.80 375.27 -13.37 -44.17 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -5.18 Total: -0.99 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: -5.49 Total: -14.39 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: 0.55 Total: -44.98 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: -0.85 SS G_CDS: -2.38 Total: -3.23 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -1.50 Total: -2.28 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.80 -13.37 -44.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016429379.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.871 kcal (2) G-P(sol) polarization free energy of solvation -30.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds