Wall clock time and date at job start Tue Mar 31 2020 06:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99883 * 2 1 4 4 H 1.48501 * 109.47127 * 240.00396 * 3 2 1 5 5 H 1.48497 * 109.47128 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47318 * 120.00268 * 3 2 1 7 7 C 1.37877 * 119.99893 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99538 * 179.97438 * 7 2 1 9 9 C 1.50691 * 120.00301 * 359.97438 * 7 2 1 10 10 S 1.80998 * 109.47442 * 180.02562 * 9 7 2 11 11 C 1.76202 * 100.00341 * 179.97438 * 10 9 7 12 12 N 1.32400 * 119.20404 * 179.97438 * 11 10 9 13 13 C 1.32918 * 121.26053 * 179.97438 * 12 11 10 14 14 C 1.37596 * 119.02101 * 359.79320 * 13 12 11 15 15 C 1.40151 * 118.52576 * 0.31296 * 14 13 12 16 16 C 1.48286 * 120.40755 * 179.76624 * 15 14 13 17 17 C 1.39397 * 120.11315 * 224.73755 * 16 15 14 18 18 C 1.37968 * 119.88591 * 179.97438 * 17 16 15 19 19 C 1.38464 * 120.11410 * 359.97438 * 18 17 16 20 20 Cl 1.73598 * 119.88640 * 179.97438 * 19 18 17 21 21 C 1.38457 * 120.22117 * 0.27658 * 19 18 17 22 22 C 1.37972 * 120.11270 * 359.44697 * 21 19 18 23 23 N 1.32419 * 119.20342 * 0.22987 * 11 10 9 24 24 C 1.50353 * 122.82276 * 180.65279 * 14 13 12 25 25 C 1.52819 * 110.46994 * 342.39792 * 24 14 13 26 26 C 1.53310 * 108.47282 * 50.80005 * 25 24 14 27 27 C 1.50469 * 118.41146 * 179.68779 * 13 12 11 28 28 H 0.97005 * 120.00312 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.47377 * 59.99849 * 9 7 2 30 30 H 1.09000 * 109.47229 * 299.99778 * 9 7 2 31 31 H 1.07996 * 120.05802 * 0.02562 * 17 16 15 32 32 H 1.08005 * 119.94016 * 179.97438 * 18 17 16 33 33 H 1.07997 * 119.94045 * 179.70070 * 21 19 18 34 34 H 1.08005 * 120.05203 * 180.29771 * 22 21 19 35 35 H 1.09001 * 109.30117 * 102.70543 * 24 14 13 36 36 H 1.09000 * 109.30465 * 222.09111 * 24 14 13 37 37 H 1.08993 * 109.63765 * 291.09891 * 25 24 14 38 38 H 1.09001 * 109.63626 * 170.49047 * 25 24 14 39 39 H 1.08998 * 109.63085 * 170.57165 * 26 25 24 40 40 H 1.08991 * 109.63367 * 49.96997 * 26 25 24 41 41 H 1.08997 * 109.30665 * 282.55979 * 27 13 12 42 42 H 1.08994 * 109.30397 * 42.14731 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 16 2.4272 -3.8749 -0.0005 11 6 1.3072 -5.2351 0.0002 12 7 1.7887 -6.4684 -0.0001 13 6 0.9812 -7.5242 0.0010 14 6 -0.3801 -7.3234 0.0068 15 6 -0.8625 -6.0075 0.0046 16 6 -2.3216 -5.7431 0.0055 17 6 -2.8578 -4.7772 -0.8447 18 6 -4.2161 -4.5354 -0.8404 19 6 -5.0464 -5.2505 0.0060 20 17 -6.7546 -4.9409 0.0070 21 6 -4.5181 -6.2072 0.8560 22 6 -3.1618 -6.4606 0.8553 23 7 0.0042 -4.9991 -0.0040 24 6 -1.3706 -8.4544 0.0228 25 6 -0.6986 -9.7595 -0.4019 26 6 0.5746 -9.9440 0.4320 27 6 1.5974 -8.8969 -0.0067 28 1 -0.4851 0.8401 0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6248 -2.5571 0.8897 31 1 -2.2112 -4.2198 -1.5061 32 1 -4.6324 -3.7869 -1.4984 33 1 -5.1693 -6.7590 1.5178 34 1 -2.7514 -7.2106 1.5154 35 1 -1.7726 -8.5670 1.0298 36 1 -2.1862 -8.2288 -0.6643 37 1 -0.4400 -9.7110 -1.4595 38 1 -1.3762 -10.5948 -0.2253 39 1 0.9790 -10.9426 0.2668 40 1 0.3431 -9.8096 1.4885 41 1 1.9436 -9.1309 -1.0134 42 1 2.4444 -8.9154 0.6790 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000016429379.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:46 Heat of formation + Delta-G solvation = 24.741359 kcal Electronic energy + Delta-G solvation = -26397.754505 eV Core-core repulsion = 22685.831635 eV Total energy + Delta-G solvation = -3711.922870 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 360.076 amu Computer time = 3.98 seconds Orbital eigenvalues (eV) -42.43944 -40.21222 -38.05187 -37.58339 -35.52550 -35.30533 -32.95778 -32.28419 -31.25971 -30.74266 -30.67149 -26.51477 -25.32610 -25.02764 -24.25321 -23.72810 -22.53870 -20.97724 -19.30581 -18.89225 -18.42868 -17.91391 -16.95147 -16.87144 -16.54415 -16.22211 -15.86351 -15.61048 -15.09075 -15.04130 -14.85429 -14.68602 -14.49901 -14.43279 -14.41111 -14.21039 -13.92078 -13.26800 -12.95957 -12.82071 -12.79261 -12.69560 -12.64942 -12.54737 -12.23045 -11.93374 -11.88639 -11.76779 -11.65018 -11.39839 -11.32594 -11.17842 -10.83249 -10.57759 -10.28785 -10.14536 -9.66568 -8.67242 -8.34325 -6.51444 -0.63309 -0.19335 0.19901 0.31822 0.43102 1.03014 1.39011 1.42990 1.48015 1.56105 2.34403 2.34975 2.59579 2.89484 2.99578 3.14552 3.48838 3.67500 3.73250 3.78091 3.81826 4.01447 4.12033 4.15967 4.31014 4.36395 4.45325 4.49862 4.57720 4.68566 4.83425 4.88606 4.90548 4.98603 5.01581 5.02509 5.09777 5.14538 5.18812 5.22591 5.29970 5.45413 5.46241 5.51719 5.60571 5.78672 5.92776 6.55962 6.84938 7.17299 8.77100 Molecular weight = 360.08amu Principal moments of inertia in cm(-1) A = 0.006721 B = 0.003839 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4165.338463 B = 7291.815231 C =11259.938790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.021 3.979 3 Si 0.978 3.022 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.551 4.551 8 H 0.069 0.931 9 C 0.091 3.909 10 S -0.045 6.045 11 C 0.285 3.715 12 N -0.527 5.527 13 C 0.179 3.821 14 C -0.175 4.175 15 C 0.202 3.798 16 C -0.056 4.056 17 C -0.081 4.081 18 C -0.115 4.115 19 C -0.025 4.025 20 Cl -0.059 7.059 21 C -0.102 4.102 22 C -0.074 4.074 23 N -0.540 5.540 24 C -0.069 4.069 25 C -0.118 4.118 26 C -0.112 4.112 27 C -0.068 4.068 28 H 0.271 0.729 29 H 0.019 0.981 30 H 0.017 0.983 31 H 0.109 0.891 32 H 0.144 0.856 33 H 0.173 0.827 34 H 0.165 0.835 35 H 0.103 0.897 36 H 0.085 0.915 37 H 0.062 0.938 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.072 0.928 41 H 0.098 0.902 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.541 -22.906 0.876 25.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.182 4.182 3 Si 0.801 3.199 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.590 4.590 8 H 0.087 0.913 9 C -0.058 4.058 10 S 0.192 5.808 11 C -0.090 4.090 12 N -0.245 5.245 13 C 0.031 3.969 14 C -0.183 4.183 15 C 0.053 3.947 16 C -0.057 4.057 17 C -0.101 4.101 18 C -0.134 4.134 19 C -0.052 4.052 20 Cl -0.030 7.030 21 C -0.120 4.120 22 C -0.093 4.093 23 N -0.257 5.257 24 C -0.107 4.107 25 C -0.155 4.155 26 C -0.149 4.149 27 C -0.106 4.106 28 H 0.080 0.920 29 H 0.037 0.963 30 H 0.036 0.964 31 H 0.127 0.873 32 H 0.161 0.839 33 H 0.190 0.810 34 H 0.183 0.817 35 H 0.121 0.879 36 H 0.103 0.897 37 H 0.081 0.919 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.091 0.909 41 H 0.116 0.884 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.912 -21.865 0.858 23.627 hybrid contribution -1.427 1.158 -0.288 1.860 sum -10.340 -20.707 0.570 23.152 Atomic orbital electron populations 1.70101 1.07825 1.28660 1.48962 1.25928 0.95848 1.03015 0.93362 0.85306 0.78221 0.76868 0.79528 1.18832 1.20066 1.18844 1.20978 0.93616 0.89905 1.54482 0.91295 1.20777 0.94260 0.91696 0.99025 1.85387 1.11536 0.94437 1.89395 1.24981 0.91878 0.96042 0.96085 1.68520 1.40796 0.98024 1.17203 1.22105 0.89662 0.95847 0.89250 1.21364 0.96369 0.95951 1.04585 1.20697 0.93411 0.89165 0.91466 1.18525 0.88958 0.98762 0.99473 1.21126 0.94961 0.95556 0.98423 1.21087 0.92220 1.00230 0.99870 1.21185 0.85512 0.99116 0.99406 1.98377 1.11692 1.95133 1.97836 1.21280 0.95095 0.97164 0.98504 1.21483 0.92229 0.98687 0.96875 1.68971 1.02760 1.36954 1.17047 1.20665 0.95270 0.90979 1.03787 1.21640 0.97406 0.96488 0.99953 1.21623 0.94416 0.98479 1.00424 1.20584 0.99506 0.86257 1.04246 0.92028 0.96252 0.96439 0.87283 0.83854 0.80995 0.81744 0.87859 0.89705 0.91894 0.87851 0.87889 0.90933 0.88367 0.89134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.39 13.29 21.45 0.28 -55.11 16 2 C 0.02 1.18 5.46 84.66 0.46 1.64 16 3 Si 0.98 44.07 29.54 68.60 2.03 46.09 16 4 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 5 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 6 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 7 C -0.55 -32.27 9.13 25.60 0.23 -32.04 16 8 H 0.07 3.91 7.71 -2.91 -0.02 3.88 16 9 C 0.09 5.19 4.56 71.23 0.33 5.51 16 10 S -0.05 -2.20 22.17 -56.49 -1.25 -3.45 16 11 C 0.29 12.86 7.85 180.51 1.42 14.28 16 12 N -0.53 -20.57 10.26 -185.29 -1.90 -22.47 16 13 C 0.18 5.28 6.62 42.17 0.28 5.56 16 14 C -0.17 -4.75 5.73 -19.66 -0.11 -4.87 16 15 C 0.20 7.00 6.39 42.11 0.27 7.27 16 16 C -0.06 -1.65 5.07 -20.05 -0.10 -1.75 16 17 C -0.08 -2.57 9.68 22.49 0.22 -2.35 16 18 C -0.12 -3.02 9.81 22.26 0.22 -2.81 16 19 C -0.03 -0.55 6.32 22.38 0.14 -0.41 16 20 Cl -0.06 -1.15 28.95 -2.72 -0.08 -1.23 16 21 C -0.10 -1.83 9.81 22.26 0.22 -1.61 16 22 C -0.07 -1.51 7.98 22.49 0.18 -1.34 16 23 N -0.54 -24.05 8.99 -185.42 -1.67 -25.72 16 24 C -0.07 -1.09 4.08 29.68 0.12 -0.97 16 25 C -0.12 -1.28 5.98 30.64 0.18 -1.09 16 26 C -0.11 -1.25 5.97 30.63 0.18 -1.07 16 27 C -0.07 -1.30 5.95 29.71 0.18 -1.12 16 28 H 0.27 15.22 8.31 -92.70 -0.77 14.44 16 29 H 0.02 1.18 8.11 -2.39 -0.02 1.16 16 30 H 0.02 1.07 8.11 -2.40 -0.02 1.05 16 31 H 0.11 4.03 8.06 -2.91 -0.02 4.00 16 32 H 0.14 3.44 8.06 -2.91 -0.02 3.42 16 33 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 34 H 0.17 2.41 5.81 -2.91 -0.02 2.39 16 35 H 0.10 1.18 6.35 -2.39 -0.02 1.17 16 36 H 0.08 1.32 7.03 -2.39 -0.02 1.31 16 37 H 0.06 0.78 8.10 -2.39 -0.02 0.76 16 38 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.07 0.80 8.10 -2.39 -0.02 0.78 16 41 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -73.73 375.27 2.88 -70.85 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: 1.05 Total: 8.19 kcal Atomic # 6 Polarization: -21.57 SS G_CDS: 4.41 Total: -17.16 kcal Atomic # 7 Polarization: -100.01 SS G_CDS: -3.28 Total: -103.29 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal Atomic # 16 Polarization: -2.20 SS G_CDS: -1.25 Total: -3.45 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -0.08 Total: -1.23 kcal Total: -73.73 2.88 -70.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016429379.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.590 kcal (2) G-P(sol) polarization free energy of solvation -73.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.98 seconds