Wall clock time and date at job start Tue Mar 31 2020 07:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31491 * 119.66392 * 2 1 4 4 C 1.32779 * 121.78105 * 180.24344 * 3 2 1 5 5 C 1.48213 * 119.56491 * 179.74544 * 4 3 2 6 6 C 1.39458 * 120.12332 * 0.02562 * 5 4 3 7 7 C 1.37975 * 119.88801 * 180.02562 * 6 5 4 8 8 C 1.38347 * 120.14008 * 359.97438 * 7 6 5 9 9 C 1.38408 * 120.25523 * 0.02562 * 8 7 6 10 10 Br 1.89101 * 119.94633 * 180.02562 * 9 8 7 11 11 C 1.38109 * 120.10650 * 359.71914 * 9 8 7 12 12 C 1.39535 * 120.87403 * 359.76889 * 4 3 2 13 13 C 1.38009 * 119.22666 * 359.97438 * 12 4 3 14 14 C 1.39728 * 119.65616 * 179.74740 * 2 1 3 15 15 C 1.47508 * 120.46945 * 0.02562 * 14 2 1 16 16 O 1.21524 * 119.99803 * 353.49262 * 15 14 2 17 17 O 1.34756 * 119.99858 * 173.48716 * 15 14 2 18 18 C 1.34839 * 116.99997 * 179.97438 * 17 15 14 19 19 H 1.08008 * 120.00160 * 0.02562 * 18 17 15 20 20 C 1.38817 * 120.00260 * 179.72579 * 18 17 15 21 21 N 1.31411 * 119.99668 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00369 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47113 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47484 * 119.99959 * 22 20 18 25 25 H 1.48508 * 109.47036 * 240.00050 * 22 20 18 26 26 H 1.08996 * 109.47409 * 263.65783 * 1 2 3 27 27 H 1.09007 * 109.46631 * 23.65740 * 1 2 3 28 28 H 1.08996 * 109.47360 * 143.65314 * 1 2 3 29 29 H 1.07999 * 120.05716 * 359.97438 * 6 5 4 30 30 H 1.08005 * 119.93263 * 180.02562 * 7 6 5 31 31 H 1.07999 * 119.87436 * 180.02562 * 8 7 6 32 32 H 1.08008 * 120.06747 * 180.30373 * 11 9 8 33 33 H 1.08002 * 120.38587 * 179.97438 * 12 4 3 34 34 H 1.08001 * 120.81467 * 179.97438 * 13 12 4 35 35 H 0.97008 * 120.00038 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1578 1.1426 0.0000 4 6 3.4846 1.1916 -0.0048 5 6 4.1678 2.5069 -0.0103 6 6 3.4199 3.6840 -0.0099 7 6 4.0609 4.9058 -0.0155 8 6 5.4431 4.9651 -0.0211 9 6 6.1911 3.8006 -0.0215 10 35 8.0799 3.8918 -0.0284 11 6 5.5603 2.5720 -0.0106 12 6 4.2444 0.0213 -0.0052 13 6 3.6012 -1.1997 -0.0001 14 6 2.1984 -1.2142 0.0054 15 6 1.4636 -2.4933 0.0104 16 8 0.2542 -2.4988 0.1293 17 8 2.1335 -3.6556 -0.1168 18 6 1.4021 -4.7883 -0.1038 19 1 0.3287 -4.7368 0.0047 20 6 2.0279 -6.0203 -0.2362 21 7 3.3334 -6.0827 -0.3736 22 14 1.0146 -7.5895 -0.2189 23 1 -0.4214 -7.2496 -0.0521 24 1 1.2061 -8.3166 -1.4994 25 1 1.4535 -8.4497 0.9093 26 1 -0.3634 -0.1135 1.0213 27 1 -0.3633 0.9414 -0.4124 28 1 -0.3634 -0.8277 -0.6090 29 1 2.3409 3.6393 -0.0059 30 1 3.4825 5.8179 -0.0148 31 1 5.9404 5.9238 -0.0251 32 1 6.1446 1.6637 -0.0060 33 1 5.3233 0.0704 -0.0096 34 1 4.1639 -2.1215 -0.0007 35 1 3.7708 -6.9436 -0.4657 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000017731929.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:50 Heat of formation + Delta-G solvation = -15.565950 kcal Electronic energy + Delta-G solvation = -22288.580955 eV Core-core repulsion = 18684.177915 eV Total energy + Delta-G solvation = -3604.403040 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 361.010 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.54956 -39.33712 -38.46688 -35.46957 -33.42434 -32.97238 -32.38448 -32.10204 -30.49172 -29.34553 -27.61074 -25.68725 -24.57011 -23.09335 -21.78082 -21.44113 -20.41131 -17.88864 -17.54929 -17.18194 -16.20014 -15.92064 -15.27572 -15.02635 -14.94888 -14.45050 -14.34961 -14.07726 -13.93687 -13.59566 -13.39845 -12.90165 -12.68319 -12.26529 -12.18224 -11.89333 -11.65298 -11.53472 -11.40867 -11.31701 -11.11730 -10.58768 -10.57030 -10.48477 -9.97804 -9.79314 -9.53097 -9.45273 -9.03884 -8.89791 -8.72758 -8.25317 -6.58830 -4.19678 0.27458 0.90004 1.33138 1.39523 1.49171 3.01984 3.11406 3.18839 3.20617 3.63421 3.77482 3.98360 4.20374 4.42862 4.47206 4.65193 4.76827 4.96671 5.01016 5.02400 5.07610 5.20453 5.35128 5.41470 5.51359 5.75669 5.81607 6.00412 6.05088 6.13804 6.18381 6.24191 6.36219 6.50741 6.59726 6.63994 6.91890 7.25979 7.79265 8.03575 8.57099 8.89798 9.68307 10.58419 Molecular weight = 361.01amu Principal moments of inertia in cm(-1) A = 0.017339 B = 0.002215 C = 0.001967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.468502 B =12639.133048 C =14233.517214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.182 3.818 3 N -0.484 5.484 4 C 0.167 3.833 5 C -0.032 4.032 6 C -0.066 4.066 7 C -0.119 4.119 8 C -0.086 4.086 9 C -0.093 4.093 10 Br -0.052 7.052 11 C -0.074 4.074 12 C -0.177 4.177 13 C -0.026 4.026 14 C -0.136 4.136 15 C 0.432 3.568 16 O -0.544 6.544 17 O -0.203 6.203 18 C -0.371 4.371 19 H 0.101 0.899 20 C 0.041 3.959 21 N -0.855 5.855 22 Si 0.946 3.054 23 H -0.263 1.263 24 H -0.275 1.275 25 H -0.275 1.275 26 H 0.080 0.920 27 H 0.063 0.937 28 H 0.106 0.894 29 H 0.143 0.857 30 H 0.135 0.865 31 H 0.132 0.868 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.155 0.845 35 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.377 21.345 0.410 22.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.043 3.957 3 N -0.193 5.193 4 C 0.031 3.969 5 C -0.034 4.034 6 C -0.085 4.085 7 C -0.138 4.138 8 C -0.106 4.106 9 C -0.173 4.173 10 Br 0.034 6.966 11 C -0.095 4.095 12 C -0.197 4.197 13 C -0.051 4.051 14 C -0.140 4.140 15 C 0.280 3.720 16 O -0.443 6.443 17 O -0.109 6.109 18 C -0.446 4.446 19 H 0.119 0.881 20 C -0.164 4.164 21 N -0.491 5.491 22 Si 0.770 3.230 23 H -0.187 1.187 24 H -0.200 1.200 25 H -0.200 1.200 26 H 0.099 0.901 27 H 0.082 0.918 28 H 0.124 0.876 29 H 0.161 0.839 30 H 0.153 0.847 31 H 0.150 0.850 32 H 0.157 0.843 33 H 0.156 0.844 34 H 0.173 0.827 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.489 21.933 0.410 23.522 hybrid contribution -0.127 -1.619 0.030 1.624 sum 8.362 20.314 0.440 21.972 Atomic orbital electron populations 1.21025 0.87392 1.03477 1.04248 1.21356 0.97427 0.86049 0.90881 1.67442 1.08305 1.28875 1.14699 1.19645 0.89394 0.91801 0.96042 1.18493 0.91807 0.91736 1.01356 1.21538 1.01430 0.90910 0.94585 1.21170 0.93741 0.98247 1.00632 1.21210 0.94117 0.97112 0.98197 1.21612 0.90424 0.95976 1.09269 1.96732 1.03028 1.99061 1.97795 1.21226 0.93657 0.96902 0.97673 1.21960 1.01221 0.92199 1.04302 1.21992 0.93525 0.98986 0.90606 1.20322 0.94135 0.93311 1.06197 1.20370 0.86056 0.84770 0.80760 1.90589 1.14885 1.87381 1.51431 1.83879 1.40011 1.13134 1.73914 1.21415 0.92583 0.80415 1.50229 0.88148 1.25426 0.96237 0.98781 0.95998 1.69975 1.08312 1.26539 1.44249 0.85561 0.79586 0.79572 0.78283 1.18736 1.20011 1.20012 0.90139 0.91838 0.87570 0.83890 0.84745 0.84963 0.84322 0.84370 0.82690 0.91779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.74 8.86 36.01 0.32 -1.43 16 2 C 0.18 3.31 6.82 -82.18 -0.56 2.75 16 3 N -0.48 -7.98 9.31 -5.71 -0.05 -8.04 16 4 C 0.17 2.51 6.73 -82.87 -0.56 1.95 16 5 C -0.03 -0.40 5.88 -104.91 -0.62 -1.02 16 6 C -0.07 -0.72 9.57 -39.22 -0.38 -1.10 16 7 C -0.12 -1.04 10.03 -39.64 -0.40 -1.43 16 8 C -0.09 -0.76 9.78 -39.48 -0.39 -1.14 16 9 C -0.09 -0.94 6.22 -39.57 -0.25 -1.18 16 10 Br -0.05 -0.47 33.69 -68.01 -2.29 -2.77 16 11 C -0.07 -0.82 9.15 -39.20 -0.36 -1.17 16 12 C -0.18 -2.61 9.44 -39.18 -0.37 -2.98 16 13 C -0.03 -0.45 9.72 -38.89 -0.38 -0.83 16 14 C -0.14 -2.75 5.89 -104.79 -0.62 -3.37 16 15 C 0.43 10.55 7.76 34.51 0.27 10.81 16 16 O -0.54 -13.78 12.61 -19.28 -0.24 -14.02 16 17 O -0.20 -5.58 9.08 -21.66 -0.20 -5.78 16 18 C -0.37 -10.49 9.65 30.95 0.30 -10.19 16 19 H 0.10 2.85 6.86 -52.48 -0.36 2.49 16 20 C 0.04 1.10 5.50 -17.52 -0.10 1.00 16 21 N -0.85 -23.86 13.67 55.49 0.76 -23.10 16 22 Si 0.95 20.38 29.55 -169.99 -5.02 15.36 16 23 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 24 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 25 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 26 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 27 H 0.06 0.90 8.14 -51.92 -0.42 0.47 16 28 H 0.11 1.99 5.85 -51.93 -0.30 1.68 16 29 H 0.14 1.56 7.53 -52.49 -0.40 1.17 16 30 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 31 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 32 H 0.14 1.38 6.17 -52.48 -0.32 1.06 16 33 H 0.14 1.60 6.17 -52.49 -0.32 1.27 16 34 H 0.16 2.79 7.71 -52.49 -0.40 2.39 16 35 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 331.22 15.07 4.99 4.99 Total: -1.00 -30.61 331.22 -9.07 -39.68 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -2.94 Total: 2.99 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: -4.08 Total: -9.32 kcal Atomic # 7 Polarization: -31.84 SS G_CDS: 0.71 Total: -31.14 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -0.44 Total: -19.80 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Atomic # 35 Polarization: -0.47 SS G_CDS: -2.29 Total: -2.77 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.61 -9.07 -39.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000017731929.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.114 kcal (2) G-P(sol) polarization free energy of solvation -30.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds