Wall clock time and date at job start Tue Mar 31 2020 07:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31491 * 119.66392 * 2 1 4 4 C 1.32779 * 121.78105 * 180.24344 * 3 2 1 5 5 C 1.48213 * 119.56491 * 179.74544 * 4 3 2 6 6 C 1.39458 * 120.12332 * 0.02562 * 5 4 3 7 7 C 1.37975 * 119.88801 * 180.02562 * 6 5 4 8 8 C 1.38347 * 120.14008 * 359.97438 * 7 6 5 9 9 C 1.38408 * 120.25523 * 0.02562 * 8 7 6 10 10 Br 1.89101 * 119.94633 * 180.02562 * 9 8 7 11 11 C 1.38109 * 120.10650 * 359.71914 * 9 8 7 12 12 C 1.39535 * 120.87403 * 359.76889 * 4 3 2 13 13 C 1.38009 * 119.22666 * 359.97438 * 12 4 3 14 14 C 1.39728 * 119.65616 * 179.74740 * 2 1 3 15 15 C 1.47508 * 120.46945 * 0.02562 * 14 2 1 16 16 O 1.21524 * 119.99803 * 353.49262 * 15 14 2 17 17 O 1.34756 * 119.99858 * 173.48716 * 15 14 2 18 18 C 1.34839 * 116.99997 * 179.97438 * 17 15 14 19 19 H 1.08008 * 120.00160 * 0.02562 * 18 17 15 20 20 C 1.38817 * 120.00260 * 179.72579 * 18 17 15 21 21 N 1.31411 * 119.99668 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00369 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47113 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47484 * 119.99959 * 22 20 18 25 25 H 1.48508 * 109.47036 * 240.00050 * 22 20 18 26 26 H 1.08996 * 109.47409 * 263.65783 * 1 2 3 27 27 H 1.09007 * 109.46631 * 23.65740 * 1 2 3 28 28 H 1.08996 * 109.47360 * 143.65314 * 1 2 3 29 29 H 1.07999 * 120.05716 * 359.97438 * 6 5 4 30 30 H 1.08005 * 119.93263 * 180.02562 * 7 6 5 31 31 H 1.07999 * 119.87436 * 180.02562 * 8 7 6 32 32 H 1.08008 * 120.06747 * 180.30373 * 11 9 8 33 33 H 1.08002 * 120.38587 * 179.97438 * 12 4 3 34 34 H 1.08001 * 120.81467 * 179.97438 * 13 12 4 35 35 H 0.97008 * 120.00038 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1578 1.1426 0.0000 4 6 3.4846 1.1916 -0.0048 5 6 4.1678 2.5069 -0.0103 6 6 3.4199 3.6840 -0.0099 7 6 4.0609 4.9058 -0.0155 8 6 5.4431 4.9651 -0.0211 9 6 6.1911 3.8006 -0.0215 10 35 8.0799 3.8918 -0.0284 11 6 5.5603 2.5720 -0.0106 12 6 4.2444 0.0213 -0.0052 13 6 3.6012 -1.1997 -0.0001 14 6 2.1984 -1.2142 0.0054 15 6 1.4636 -2.4933 0.0104 16 8 0.2542 -2.4988 0.1293 17 8 2.1335 -3.6556 -0.1168 18 6 1.4021 -4.7883 -0.1038 19 1 0.3287 -4.7368 0.0047 20 6 2.0279 -6.0203 -0.2362 21 7 3.3334 -6.0827 -0.3736 22 14 1.0146 -7.5895 -0.2189 23 1 -0.4214 -7.2496 -0.0521 24 1 1.2061 -8.3166 -1.4994 25 1 1.4535 -8.4497 0.9093 26 1 -0.3634 -0.1135 1.0213 27 1 -0.3633 0.9414 -0.4124 28 1 -0.3634 -0.8277 -0.6090 29 1 2.3409 3.6393 -0.0059 30 1 3.4825 5.8179 -0.0148 31 1 5.9404 5.9238 -0.0251 32 1 6.1446 1.6637 -0.0060 33 1 5.3233 0.0704 -0.0096 34 1 4.1639 -2.1215 -0.0007 35 1 3.7708 -6.9436 -0.4657 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000017731929.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:49 Heat of formation + Delta-G solvation = -31.406679 kcal Electronic energy + Delta-G solvation = -22289.267860 eV Core-core repulsion = 18684.177915 eV Total energy + Delta-G solvation = -3605.089945 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 361.010 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.93386 -40.78498 -39.77646 -37.40284 -34.62157 -34.51295 -34.02767 -33.13250 -31.55549 -30.16326 -29.04918 -27.49989 -25.94317 -24.11569 -23.17740 -22.50144 -21.89900 -19.92354 -18.99625 -18.41008 -17.48808 -17.13459 -16.87522 -16.77801 -16.18979 -15.87952 -15.51562 -15.42850 -15.20761 -14.57460 -14.43748 -14.37215 -14.06282 -13.71605 -13.63344 -13.43619 -13.19198 -12.95437 -12.49433 -12.41117 -12.23377 -12.18603 -12.02573 -11.93976 -11.29918 -11.09856 -11.03453 -10.73719 -10.64794 -10.56084 -9.83047 -9.39038 -8.59283 -6.34898 -0.91005 0.06919 0.11659 0.37294 0.58171 1.34249 1.35117 1.52618 1.73537 2.05446 2.43232 2.56612 2.84650 2.88796 3.00110 3.39676 3.63479 3.74391 3.82409 3.97935 4.12996 4.18441 4.35700 4.40069 4.46559 4.65077 4.73593 4.74988 4.83008 4.92239 5.02443 5.11792 5.12847 5.18257 5.29738 5.43367 5.53336 5.73337 5.78638 6.57221 6.67734 6.85859 7.68130 8.61187 Molecular weight = 361.01amu Principal moments of inertia in cm(-1) A = 0.017339 B = 0.002215 C = 0.001967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.468502 B =12639.133048 C =14233.517214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.185 3.815 3 N -0.485 5.485 4 C 0.185 3.815 5 C -0.060 4.060 6 C -0.069 4.069 7 C -0.112 4.112 8 C -0.074 4.074 9 C -0.104 4.104 10 Br -0.044 7.044 11 C -0.073 4.073 12 C -0.172 4.172 13 C -0.024 4.024 14 C -0.177 4.177 15 C 0.437 3.563 16 O -0.559 6.559 17 O -0.232 6.232 18 C -0.415 4.415 19 H 0.087 0.913 20 C -0.002 4.002 21 N -0.896 5.896 22 Si 1.018 2.982 23 H -0.263 1.263 24 H -0.260 1.260 25 H -0.260 1.260 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.141 0.859 30 H 0.167 0.833 31 H 0.158 0.842 32 H 0.146 0.854 33 H 0.174 0.826 34 H 0.145 0.855 35 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.411 24.015 0.440 25.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.046 3.954 3 N -0.195 5.195 4 C 0.049 3.951 5 C -0.062 4.062 6 C -0.088 4.088 7 C -0.130 4.130 8 C -0.094 4.094 9 C -0.184 4.184 10 Br 0.041 6.959 11 C -0.094 4.094 12 C -0.191 4.191 13 C -0.049 4.049 14 C -0.181 4.181 15 C 0.286 3.714 16 O -0.458 6.458 17 O -0.140 6.140 18 C -0.490 4.490 19 H 0.105 0.895 20 C -0.203 4.203 21 N -0.533 5.533 22 Si 0.837 3.163 23 H -0.187 1.187 24 H -0.185 1.185 25 H -0.184 1.184 26 H 0.100 0.900 27 H 0.110 0.890 28 H 0.100 0.900 29 H 0.159 0.841 30 H 0.184 0.816 31 H 0.176 0.824 32 H 0.164 0.836 33 H 0.191 0.809 34 H 0.163 0.837 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 9.524 24.631 0.441 26.412 hybrid contribution -0.307 -1.998 0.029 2.021 sum 9.217 22.633 0.471 24.442 Atomic orbital electron populations 1.20942 0.86740 1.03932 1.03997 1.21503 0.98062 0.85787 0.90020 1.67561 1.09134 1.27469 1.15331 1.20220 0.88992 0.93361 0.92506 1.18430 0.92466 0.90739 1.04586 1.21668 1.01480 0.91365 0.94267 1.21494 0.93943 0.98494 0.99076 1.21607 0.94241 0.97791 0.95730 1.21772 0.91058 0.96105 1.09432 1.96756 1.02305 1.99024 1.97770 1.21310 0.93091 0.97848 0.97110 1.22251 1.02946 0.90708 1.03175 1.21980 0.92600 1.00021 0.90290 1.20192 0.95188 0.91808 1.10885 1.21210 0.86266 0.85478 0.78415 1.90558 1.15831 1.87911 1.51490 1.83901 1.40581 1.13838 1.75673 1.21561 0.92343 0.81629 1.53492 0.89545 1.26564 0.97546 1.01669 0.94570 1.70052 1.09905 1.27923 1.45391 0.84551 0.77647 0.74858 0.79230 1.18687 1.18460 1.18447 0.89988 0.88981 0.90006 0.84084 0.81555 0.82408 0.83632 0.80861 0.83696 0.91008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.36 8.86 71.24 0.63 -2.73 16 2 C 0.19 6.80 6.82 42.97 0.29 7.09 16 3 N -0.49 -15.54 9.31 -171.97 -1.60 -17.14 16 4 C 0.19 5.29 6.73 41.97 0.28 5.57 16 5 C -0.06 -1.36 5.88 -20.05 -0.12 -1.48 16 6 C -0.07 -1.31 9.57 22.50 0.22 -1.09 16 7 C -0.11 -1.48 10.03 22.23 0.22 -1.25 16 8 C -0.07 -0.98 9.78 22.34 0.22 -0.77 16 9 C -0.10 -1.75 6.22 22.28 0.14 -1.61 16 10 Br -0.04 -0.69 33.69 -20.37 -0.69 -1.37 16 11 C -0.07 -1.41 9.15 22.52 0.21 -1.20 16 12 C -0.17 -4.88 9.44 22.53 0.21 -4.67 16 13 C -0.02 -0.86 9.72 22.71 0.22 -0.63 16 14 C -0.18 -7.45 5.89 -19.97 -0.12 -7.56 16 15 C 0.44 22.66 7.76 70.27 0.55 23.21 16 16 O -0.56 -30.00 12.61 19.76 0.25 -29.75 16 17 O -0.23 -13.61 9.08 11.26 0.10 -13.51 16 18 C -0.41 -24.81 9.65 67.96 0.66 -24.15 16 19 H 0.09 5.22 6.86 -2.91 -0.02 5.20 16 20 C 0.00 -0.14 5.50 84.89 0.47 0.33 16 21 N -0.90 -51.71 13.67 21.64 0.30 -51.41 16 22 Si 1.02 42.59 29.55 68.60 2.03 44.62 16 23 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 24 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 25 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 26 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 27 H 0.09 2.52 8.14 -2.38 -0.02 2.50 16 28 H 0.08 3.19 5.85 -2.39 -0.01 3.18 16 29 H 0.14 2.72 7.53 -2.91 -0.02 2.70 16 30 H 0.17 1.15 8.06 -2.91 -0.02 1.13 16 31 H 0.16 1.33 8.06 -2.91 -0.02 1.30 16 32 H 0.15 2.49 6.17 -2.91 -0.02 2.48 16 33 H 0.17 3.62 6.17 -2.91 -0.02 3.60 16 34 H 0.15 5.52 7.71 -2.91 -0.02 5.50 16 35 H 0.28 14.61 8.31 -92.70 -0.77 13.84 16 Total: -1.00 -70.06 331.22 5.61 -64.44 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: 1.15 Total: 15.07 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: 4.07 Total: -10.95 kcal Atomic # 7 Polarization: -67.25 SS G_CDS: -1.31 Total: -68.55 kcal Atomic # 8 Polarization: -43.61 SS G_CDS: 0.35 Total: -43.26 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Atomic # 35 Polarization: -0.69 SS G_CDS: -0.69 Total: -1.37 kcal Total: -70.06 5.61 -64.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000017731929.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.038 kcal (2) G-P(sol) polarization free energy of solvation -70.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds