Wall clock time and date at job start Tue Mar 31 2020 05:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.54452 * 1 3 3 C 1.53271 * 107.32047 * 2 1 4 4 C 1.51852 * 108.10017 * 119.15943 * 2 1 3 5 5 C 1.51485 * 116.04066 * 154.79382 * 4 2 1 6 6 C 1.51870 * 114.25233 * 326.23836 * 5 4 2 7 7 C 1.52722 * 111.33596 * 43.63455 * 6 5 4 8 8 O 1.42016 * 107.66832 * 241.45357 * 2 1 3 9 9 C 1.52683 * 107.86465 * 205.88883 * 5 4 2 10 10 N 1.30994 * 126.29477 * 72.90632 * 9 5 4 11 11 C 1.36770 * 119.99663 * 179.97438 * 10 9 5 12 12 C 1.39711 * 120.16128 * 314.73355 * 11 10 9 13 13 C 1.37922 * 119.83972 * 179.74379 * 12 11 10 14 14 C 1.38377 * 120.15567 * 0.50146 * 13 12 11 15 15 C 1.38385 * 120.32430 * 359.77164 * 14 13 12 16 16 C 1.37924 * 120.15735 * 359.97308 * 15 14 13 17 17 N 1.33403 * 105.83957 * 252.90764 * 9 5 4 18 18 C 1.31111 * 112.28175 * 353.09491 * 17 9 5 19 19 S 1.76170 * 124.13539 * 179.34283 * 18 17 9 20 20 N 1.37291 * 112.14216 * 359.43182 * 18 17 9 21 21 C 1.36935 * 125.35145 * 188.95953 * 20 18 17 22 22 H 1.08010 * 119.99794 * 136.99515 * 21 20 18 23 23 C 1.38921 * 120.00302 * 316.98923 * 21 20 18 24 24 N 1.31448 * 119.99866 * 336.69964 * 23 21 20 25 25 Si 1.86803 * 119.99964 * 156.69892 * 23 21 20 26 26 H 1.48501 * 109.47063 * 90.00113 * 25 23 21 27 27 H 1.48498 * 109.46889 * 210.00029 * 25 23 21 28 28 H 1.48490 * 109.47108 * 330.00046 * 25 23 21 29 29 H 1.09001 * 109.47166 * 300.84129 * 1 2 3 30 30 H 1.09004 * 109.47383 * 180.83646 * 1 2 3 31 31 H 1.08997 * 109.47721 * 60.83972 * 1 2 3 32 32 H 1.09005 * 109.47323 * 60.00312 * 3 2 1 33 33 H 1.09001 * 109.47795 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47588 * 300.00440 * 3 2 1 35 35 H 1.10263 * 108.71263 * 277.37181 * 4 2 1 36 36 H 1.10265 * 108.65494 * 32.23779 * 4 2 1 37 37 H 1.09420 * 109.47985 * 164.62167 * 6 5 4 38 38 H 1.09491 * 109.41418 * 282.94049 * 6 5 4 39 39 H 1.08538 * 110.71592 * 66.25985 * 7 6 5 40 40 H 1.09730 * 108.86673 * 185.10384 * 7 6 5 41 41 H 1.08003 * 120.07796 * 359.97438 * 12 11 10 42 42 H 1.07998 * 119.91832 * 180.25653 * 13 12 11 43 43 H 1.08006 * 119.83794 * 179.74607 * 14 13 12 44 44 H 1.07995 * 119.91907 * 179.97438 * 15 14 13 45 45 H 1.07989 * 120.08231 * 180.02562 * 16 15 14 46 46 H 1.40994 * 99.99940 * 0.09566 * 19 18 17 47 47 H 0.97008 * 119.99814 * 185.39449 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5445 0.0000 0.0000 3 6 2.0008 1.4632 0.0000 4 6 2.0163 -0.7033 1.2605 5 6 3.3934 -1.3310 1.1959 6 6 3.7623 -1.8869 -0.1684 7 6 3.3674 -0.9239 -1.2860 8 8 1.9755 -0.6466 -1.1887 9 6 3.4337 -2.4766 2.2046 10 7 2.8363 -3.6362 2.0852 11 6 2.9604 -4.5742 3.0728 12 6 4.2117 -4.8413 3.6340 13 6 4.3284 -5.7848 4.6332 14 6 3.2116 -6.4735 5.0729 15 6 1.9699 -6.2183 4.5177 16 6 1.8373 -5.2738 3.5214 17 7 4.1944 -2.0473 3.2129 18 6 4.7579 -0.8922 2.9537 19 16 5.8114 -0.0326 4.0740 20 7 4.4306 -0.4254 1.7048 21 6 4.9985 0.6585 1.0901 22 1 5.2651 0.6081 0.0446 23 6 5.2317 1.8228 1.8110 24 7 4.5334 2.0752 2.8957 25 14 6.5376 3.0298 1.2390 26 1 5.9266 4.0193 0.3155 27 1 7.1078 3.7360 2.4143 28 1 7.6165 2.2938 0.5324 29 1 -0.3633 0.5268 0.8823 30 1 -0.3634 -1.0276 0.0150 31 1 -0.3634 0.5007 -0.8974 32 1 1.6185 1.9631 0.8900 33 1 3.0901 1.5042 -0.0005 34 1 1.6184 1.9632 -0.8899 35 1 1.9988 0.0171 2.0951 36 1 1.2859 -1.4870 1.5214 37 1 4.8409 -2.0666 -0.2097 38 1 3.2517 -2.8432 -0.3220 39 1 3.9526 -0.0115 -1.2313 40 1 3.5671 -1.4019 -2.2533 41 1 5.0848 -4.3076 3.2887 42 1 5.2943 -5.9893 5.0708 43 1 3.3095 -7.2142 5.8528 44 1 1.1028 -6.7599 4.8655 45 1 0.8677 -5.0753 3.0894 46 1 5.8015 -0.9329 5.1590 47 1 4.6404 2.9228 3.3551 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000018066624.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:08 Heat of formation + Delta-G solvation = 51.170204 kcal Electronic energy + Delta-G solvation = -31634.797297 eV Core-core repulsion = 27716.863060 eV Total energy + Delta-G solvation = -3917.934237 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 359.141 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -40.96582 -38.61225 -38.13326 -35.05349 -33.44878 -33.40682 -32.64339 -30.68776 -30.22782 -28.39976 -27.72229 -26.75844 -25.25660 -24.71738 -22.91627 -21.89965 -21.74242 -20.82569 -19.19134 -18.65035 -18.11638 -16.32307 -16.15015 -15.93789 -15.86993 -15.26564 -15.11552 -14.57301 -14.39661 -14.26551 -14.22246 -13.78553 -13.57364 -13.05185 -12.84966 -12.63208 -12.55325 -12.35072 -12.21208 -12.07529 -11.76293 -11.69004 -11.50658 -11.34174 -11.19560 -11.09896 -11.04357 -10.93392 -10.66915 -10.62608 -10.49889 -10.47475 -10.07192 -9.78744 -9.53658 -9.29011 -9.12473 -8.37409 -8.27445 -7.89919 -7.56038 -6.90452 -6.76149 -4.61013 1.48901 2.03705 2.06954 2.44782 2.85344 2.93647 2.96701 3.08806 3.58853 4.01981 4.11528 4.29851 4.36584 4.48254 4.76928 5.11916 5.19192 5.31410 5.43220 5.47043 5.54666 5.61825 5.68909 5.72225 5.87650 5.94823 5.99092 6.04358 6.07487 6.09050 6.17834 6.22798 6.27534 6.28245 6.36480 6.40751 6.47949 6.59459 6.60255 6.70903 6.77945 6.85316 6.96169 6.98815 7.13165 7.15828 7.34982 7.71105 7.83994 7.85596 8.25540 8.74233 9.01376 9.25323 9.91458 Molecular weight = 359.14amu Principal moments of inertia in cm(-1) A = 0.010087 B = 0.004779 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2775.187683 B = 5858.074606 C = 7750.625702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.131 3.869 3 C -0.176 4.176 4 C -0.116 4.116 5 C 0.159 3.841 6 C -0.132 4.132 7 C 0.067 3.933 8 O -0.374 6.374 9 C 0.384 3.616 10 N -0.580 5.580 11 C 0.167 3.833 12 C -0.144 4.144 13 C -0.109 4.109 14 C -0.168 4.168 15 C -0.110 4.110 16 C -0.144 4.144 17 N -0.661 5.661 18 C 0.347 3.653 19 S 0.049 5.951 20 N -0.372 5.372 21 C -0.310 4.310 22 H 0.109 0.891 23 C 0.047 3.953 24 N -0.783 5.783 25 Si 0.922 3.078 26 H -0.270 1.270 27 H -0.271 1.271 28 H -0.259 1.259 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.087 0.913 34 H 0.047 0.953 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.090 0.910 39 H 0.062 0.938 40 H 0.086 0.914 41 H 0.115 0.885 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.111 0.889 45 H 0.114 0.886 46 H 0.049 0.951 47 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.537 -0.353 -2.089 2.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.091 3.909 3 C -0.233 4.233 4 C -0.155 4.155 5 C 0.068 3.932 6 C -0.171 4.171 7 C -0.010 4.010 8 O -0.293 6.293 9 C 0.106 3.894 10 N -0.309 5.309 11 C 0.063 3.937 12 C -0.165 4.165 13 C -0.128 4.128 14 C -0.187 4.187 15 C -0.129 4.129 16 C -0.165 4.165 17 N -0.408 5.408 18 C -0.024 4.024 19 S 0.208 5.792 20 N -0.064 5.064 21 C -0.440 4.440 22 H 0.126 0.874 23 C -0.169 4.169 24 N -0.413 5.413 25 Si 0.745 3.255 26 H -0.195 1.195 27 H -0.195 1.195 28 H -0.183 1.183 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.106 0.894 34 H 0.066 0.934 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.109 0.891 39 H 0.080 0.920 40 H 0.104 0.896 41 H 0.133 0.867 42 H 0.125 0.875 43 H 0.125 0.875 44 H 0.129 0.871 45 H 0.132 0.868 46 H 0.014 0.986 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.502 -0.325 -1.639 1.744 hybrid contribution 0.352 0.141 0.319 0.496 sum -0.150 -0.184 -1.319 1.341 Atomic orbital electron populations 1.22152 0.93328 1.02262 1.01823 1.21126 0.93914 0.91707 0.84118 1.22544 1.04917 0.94942 1.00926 1.21814 0.93717 1.01024 0.98942 1.20181 0.89202 0.89281 0.94551 1.21917 1.02413 1.00305 0.92478 1.22355 0.82719 0.98176 0.97706 1.87450 1.23647 1.79270 1.38971 1.22800 0.87553 0.91367 0.87717 1.69079 1.34157 1.00857 1.26838 1.18627 0.92055 0.93802 0.89191 1.21681 0.97948 0.98812 0.98051 1.20877 0.97815 0.96688 0.97427 1.20830 0.93187 1.02364 1.02333 1.20806 0.96892 0.98064 0.97119 1.20917 0.97564 0.99198 0.98832 1.70409 1.26507 1.12795 1.31047 1.25013 0.96860 0.90114 0.90447 1.87105 1.54972 1.24530 1.12628 1.44156 1.26969 1.22814 1.12443 1.19474 1.36693 0.89942 0.97902 0.87411 1.25655 0.97543 0.97975 0.95768 1.69867 1.32659 1.23467 1.15296 0.85934 0.80621 0.79618 0.79297 1.19530 1.19549 1.18294 0.91658 0.92191 0.92150 0.92164 0.89423 0.93387 0.90186 0.90590 0.90841 0.89117 0.91964 0.89638 0.86675 0.87491 0.87461 0.87109 0.86769 0.98623 0.89927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 8.46 37.92 0.32 -1.72 16 2 C 0.13 2.25 1.07 -90.30 -0.10 2.15 16 3 C -0.18 -2.99 8.37 37.30 0.31 -2.68 16 4 C -0.12 -2.25 4.17 -28.08 -0.12 -2.37 16 5 C 0.16 3.22 0.86 -133.16 -0.11 3.11 16 6 C -0.13 -2.42 4.86 -27.45 -0.13 -2.55 16 7 C 0.07 1.10 6.52 37.01 0.24 1.34 16 8 O -0.37 -6.54 9.92 -35.23 -0.35 -6.89 16 9 C 0.38 8.60 5.85 -155.48 -0.91 7.69 16 10 N -0.58 -13.03 10.06 -7.99 -0.08 -13.11 16 11 C 0.17 3.62 6.09 -84.56 -0.52 3.11 16 12 C -0.14 -2.98 8.76 -39.15 -0.34 -3.33 16 13 C -0.11 -1.96 10.03 -39.65 -0.40 -2.36 16 14 C -0.17 -2.77 10.04 -39.48 -0.40 -3.17 16 15 C -0.11 -1.85 10.03 -39.64 -0.40 -2.25 16 16 C -0.14 -2.79 10.00 -39.14 -0.39 -3.18 16 17 N -0.66 -15.33 9.11 -9.71 -0.09 -15.42 16 18 C 0.35 7.70 7.61 -87.77 -0.67 7.03 16 19 S 0.05 0.96 22.31 -107.50 -2.40 -1.44 16 20 N -0.37 -7.84 2.47 -103.00 -0.25 -8.09 16 21 C -0.31 -6.29 6.78 -15.02 -0.10 -6.39 16 22 H 0.11 2.10 6.42 -52.48 -0.34 1.77 16 23 C 0.05 0.93 4.07 -17.46 -0.07 0.86 16 24 N -0.78 -16.30 11.05 55.49 0.61 -15.68 16 25 Si 0.92 15.87 29.62 -169.99 -5.03 10.83 16 26 H -0.27 -4.64 7.11 56.52 0.40 -4.23 16 27 H -0.27 -4.71 7.11 56.52 0.40 -4.30 16 28 H -0.26 -4.48 7.11 56.52 0.40 -4.07 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.88 8.04 -51.93 -0.42 0.46 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 33 H 0.09 1.63 4.77 -51.93 -0.25 1.38 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.08 1.72 7.84 -51.21 -0.40 1.32 16 36 H 0.08 1.53 7.36 -51.21 -0.38 1.16 16 37 H 0.07 1.34 8.16 -51.69 -0.42 0.92 16 38 H 0.09 1.73 7.66 -51.65 -0.40 1.33 16 39 H 0.06 1.03 5.20 -52.19 -0.27 0.76 16 40 H 0.09 1.19 8.20 -51.51 -0.42 0.76 16 41 H 0.12 2.53 7.17 -52.48 -0.38 2.16 16 42 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 43 H 0.11 1.46 8.06 -52.48 -0.42 1.03 16 44 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 45 H 0.11 2.09 8.06 -52.49 -0.42 1.66 16 46 H 0.05 0.93 9.55 96.90 0.93 1.86 16 47 H 0.29 5.68 8.32 -40.82 -0.34 5.34 16 LS Contribution 382.86 15.07 5.77 5.77 Total: -1.00 -24.44 382.86 -10.86 -35.30 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: -5.26 Total: 13.45 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: -3.78 Total: -4.72 kcal Atomic # 7 Polarization: -52.50 SS G_CDS: 0.19 Total: -52.31 kcal Atomic # 8 Polarization: -6.54 SS G_CDS: -0.35 Total: -6.89 kcal Atomic # 14 Polarization: 15.87 SS G_CDS: -5.03 Total: 10.83 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -2.40 Total: -1.44 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -24.44 -10.86 -35.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000018066624.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.468 kcal (2) G-P(sol) polarization free energy of solvation -24.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds