Wall clock time and date at job start Tue Mar 31 2020 05:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.54452 * 1 3 3 C 1.53271 * 107.32047 * 2 1 4 4 C 1.51852 * 108.10017 * 119.15943 * 2 1 3 5 5 C 1.51485 * 116.04066 * 154.79382 * 4 2 1 6 6 C 1.51870 * 114.25233 * 326.23836 * 5 4 2 7 7 C 1.52722 * 111.33596 * 43.63455 * 6 5 4 8 8 O 1.42016 * 107.66832 * 241.45357 * 2 1 3 9 9 C 1.52683 * 107.86465 * 205.88883 * 5 4 2 10 10 N 1.30994 * 126.29477 * 72.90632 * 9 5 4 11 11 C 1.36770 * 119.99663 * 179.97438 * 10 9 5 12 12 C 1.39711 * 120.16128 * 314.73355 * 11 10 9 13 13 C 1.37922 * 119.83972 * 179.74379 * 12 11 10 14 14 C 1.38377 * 120.15567 * 0.50146 * 13 12 11 15 15 C 1.38385 * 120.32430 * 359.77164 * 14 13 12 16 16 C 1.37924 * 120.15735 * 359.97308 * 15 14 13 17 17 N 1.33403 * 105.83957 * 252.90764 * 9 5 4 18 18 C 1.31111 * 112.28175 * 353.09491 * 17 9 5 19 19 S 1.76170 * 124.13539 * 179.34283 * 18 17 9 20 20 N 1.37291 * 112.14216 * 359.43182 * 18 17 9 21 21 C 1.36935 * 125.35145 * 188.95953 * 20 18 17 22 22 H 1.08010 * 119.99794 * 136.99515 * 21 20 18 23 23 C 1.38921 * 120.00302 * 316.98923 * 21 20 18 24 24 N 1.31448 * 119.99866 * 336.69964 * 23 21 20 25 25 Si 1.86803 * 119.99964 * 156.69892 * 23 21 20 26 26 H 1.48501 * 109.47063 * 90.00113 * 25 23 21 27 27 H 1.48498 * 109.46889 * 210.00029 * 25 23 21 28 28 H 1.48490 * 109.47108 * 330.00046 * 25 23 21 29 29 H 1.09001 * 109.47166 * 300.84129 * 1 2 3 30 30 H 1.09004 * 109.47383 * 180.83646 * 1 2 3 31 31 H 1.08997 * 109.47721 * 60.83972 * 1 2 3 32 32 H 1.09005 * 109.47323 * 60.00312 * 3 2 1 33 33 H 1.09001 * 109.47795 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47588 * 300.00440 * 3 2 1 35 35 H 1.10263 * 108.71263 * 277.37181 * 4 2 1 36 36 H 1.10265 * 108.65494 * 32.23779 * 4 2 1 37 37 H 1.09420 * 109.47985 * 164.62167 * 6 5 4 38 38 H 1.09491 * 109.41418 * 282.94049 * 6 5 4 39 39 H 1.08538 * 110.71592 * 66.25985 * 7 6 5 40 40 H 1.09730 * 108.86673 * 185.10384 * 7 6 5 41 41 H 1.08003 * 120.07796 * 359.97438 * 12 11 10 42 42 H 1.07998 * 119.91832 * 180.25653 * 13 12 11 43 43 H 1.08006 * 119.83794 * 179.74607 * 14 13 12 44 44 H 1.07995 * 119.91907 * 179.97438 * 15 14 13 45 45 H 1.07989 * 120.08231 * 180.02562 * 16 15 14 46 46 H 1.40994 * 99.99940 * 0.09566 * 19 18 17 47 47 H 0.97008 * 119.99814 * 185.39449 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5445 0.0000 0.0000 3 6 2.0008 1.4632 0.0000 4 6 2.0163 -0.7033 1.2605 5 6 3.3934 -1.3310 1.1959 6 6 3.7623 -1.8869 -0.1684 7 6 3.3674 -0.9239 -1.2860 8 8 1.9755 -0.6466 -1.1887 9 6 3.4337 -2.4766 2.2046 10 7 2.8363 -3.6362 2.0852 11 6 2.9604 -4.5742 3.0728 12 6 4.2117 -4.8413 3.6340 13 6 4.3284 -5.7848 4.6332 14 6 3.2116 -6.4735 5.0729 15 6 1.9699 -6.2183 4.5177 16 6 1.8373 -5.2738 3.5214 17 7 4.1944 -2.0473 3.2129 18 6 4.7579 -0.8922 2.9537 19 16 5.8114 -0.0326 4.0740 20 7 4.4306 -0.4254 1.7048 21 6 4.9985 0.6585 1.0901 22 1 5.2651 0.6081 0.0446 23 6 5.2317 1.8228 1.8110 24 7 4.5334 2.0752 2.8957 25 14 6.5376 3.0298 1.2390 26 1 5.9266 4.0193 0.3155 27 1 7.1078 3.7360 2.4143 28 1 7.6165 2.2938 0.5324 29 1 -0.3633 0.5268 0.8823 30 1 -0.3634 -1.0276 0.0150 31 1 -0.3634 0.5007 -0.8974 32 1 1.6185 1.9631 0.8900 33 1 3.0901 1.5042 -0.0005 34 1 1.6184 1.9632 -0.8899 35 1 1.9988 0.0171 2.0951 36 1 1.2859 -1.4870 1.5214 37 1 4.8409 -2.0666 -0.2097 38 1 3.2517 -2.8432 -0.3220 39 1 3.9526 -0.0115 -1.2313 40 1 3.5671 -1.4019 -2.2533 41 1 5.0848 -4.3076 3.2887 42 1 5.2943 -5.9893 5.0708 43 1 3.3095 -7.2142 5.8528 44 1 1.1028 -6.7599 4.8655 45 1 0.8677 -5.0753 3.0894 46 1 5.8015 -0.9329 5.1590 47 1 4.6404 2.9228 3.3551 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000018066624.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:07 Heat of formation + Delta-G solvation = 41.006747 kcal Electronic energy + Delta-G solvation = -31635.238018 eV Core-core repulsion = 27716.863060 eV Total energy + Delta-G solvation = -3918.374958 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 359.141 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.53878 -40.06222 -39.58758 -36.62554 -35.01505 -34.78026 -34.19044 -32.27110 -31.67378 -29.88133 -29.20400 -28.04870 -26.84532 -26.26718 -24.37766 -23.38190 -23.24052 -22.31275 -20.75893 -20.16820 -19.62922 -17.88268 -17.65015 -17.45298 -17.33265 -16.74188 -16.57077 -16.06482 -15.84675 -15.80930 -15.65205 -15.29613 -15.01104 -14.51363 -14.29340 -14.10610 -13.95507 -13.84060 -13.70664 -13.50060 -13.19132 -13.04563 -13.00422 -12.77362 -12.61359 -12.49520 -12.45238 -12.37585 -12.11356 -12.08278 -11.98501 -11.94731 -11.57198 -11.32300 -11.04592 -10.85016 -10.57036 -9.92448 -9.74875 -9.49820 -9.13498 -8.46883 -8.35731 -6.22545 -0.08762 0.44625 0.61205 0.91757 1.46468 1.48604 1.54593 1.62362 2.12981 2.42212 2.66622 2.77978 2.87506 2.92030 3.22643 3.64657 3.71468 3.90322 3.97671 4.13142 4.17023 4.24591 4.28262 4.35014 4.46016 4.49490 4.59795 4.62173 4.66795 4.72739 4.75193 4.80439 4.82553 4.89154 4.95787 5.01599 5.04548 5.08848 5.24570 5.25616 5.28369 5.30343 5.52593 5.55545 5.67447 5.70286 5.87041 6.19630 6.29786 6.46646 6.66450 7.11063 7.40371 7.62245 8.36471 Molecular weight = 359.14amu Principal moments of inertia in cm(-1) A = 0.010087 B = 0.004779 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2775.187683 B = 5858.074606 C = 7750.625702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.129 3.871 3 C -0.166 4.166 4 C -0.100 4.100 5 C 0.157 3.843 6 C -0.125 4.125 7 C 0.069 3.931 8 O -0.376 6.376 9 C 0.365 3.635 10 N -0.595 5.595 11 C 0.131 3.869 12 C -0.164 4.164 13 C -0.113 4.113 14 C -0.159 4.159 15 C -0.103 4.103 16 C -0.159 4.159 17 N -0.684 5.684 18 C 0.315 3.685 19 S 0.065 5.935 20 N -0.368 5.368 21 C -0.317 4.317 22 H 0.117 0.883 23 C 0.026 3.974 24 N -0.802 5.802 25 Si 0.973 3.027 26 H -0.264 1.264 27 H -0.272 1.272 28 H -0.258 1.258 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.078 0.922 32 H 0.051 0.949 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.063 0.937 40 H 0.116 0.884 41 H 0.090 0.910 42 H 0.130 0.870 43 H 0.148 0.852 44 H 0.149 0.851 45 H 0.116 0.884 46 H 0.052 0.948 47 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.713 -0.395 -2.408 2.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.089 3.911 3 C -0.224 4.224 4 C -0.140 4.140 5 C 0.066 3.934 6 C -0.164 4.164 7 C -0.007 4.007 8 O -0.295 6.295 9 C 0.087 3.913 10 N -0.325 5.325 11 C 0.027 3.973 12 C -0.186 4.186 13 C -0.132 4.132 14 C -0.178 4.178 15 C -0.122 4.122 16 C -0.180 4.180 17 N -0.431 5.431 18 C -0.056 4.056 19 S 0.224 5.776 20 N -0.059 5.059 21 C -0.447 4.447 22 H 0.134 0.866 23 C -0.189 4.189 24 N -0.433 5.433 25 Si 0.795 3.205 26 H -0.189 1.189 27 H -0.196 1.196 28 H -0.181 1.181 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.081 0.919 40 H 0.134 0.866 41 H 0.108 0.892 42 H 0.148 0.852 43 H 0.165 0.835 44 H 0.167 0.833 45 H 0.134 0.866 46 H 0.016 0.984 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.688 -0.381 -1.957 2.110 hybrid contribution 0.398 0.103 0.498 0.646 sum -0.290 -0.278 -1.460 1.514 Atomic orbital electron populations 1.22136 0.91325 1.02553 1.03109 1.21186 0.95474 0.91435 0.82969 1.22428 1.03757 0.94751 1.01439 1.21717 0.93095 0.99753 0.99425 1.20288 0.89406 0.88694 0.94989 1.21869 1.01934 1.00338 0.92287 1.22452 0.82249 0.97842 0.98165 1.87459 1.24173 1.79245 1.38664 1.23122 0.87923 0.91909 0.88371 1.69085 1.34437 1.01177 1.27786 1.18965 0.93253 0.94685 0.90358 1.21584 0.96935 1.00291 0.99776 1.21192 0.99737 0.95826 0.96400 1.21297 0.92245 1.01966 1.02243 1.21244 0.98552 0.96849 0.95535 1.21130 0.97011 0.99980 0.99888 1.70336 1.27399 1.13507 1.31906 1.25354 0.98147 0.90516 0.91553 1.86805 1.54274 1.24287 1.12248 1.44289 1.26649 1.22772 1.12199 1.19817 1.36539 0.89932 0.98404 0.86581 1.26240 0.98321 0.98824 0.95518 1.69927 1.33371 1.24057 1.15928 0.85169 0.78574 0.77918 0.78880 1.18900 1.19627 1.18136 0.90944 0.92427 0.90296 0.92979 0.91047 0.91408 0.92962 0.92046 0.91281 0.90195 0.91888 0.86584 0.89176 0.85218 0.83474 0.83346 0.86571 0.98403 0.89495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.82 8.46 72.48 0.61 -3.21 16 2 C 0.13 4.37 1.07 -10.59 -0.01 4.36 16 3 C -0.17 -5.50 8.37 72.07 0.60 -4.90 16 4 C -0.10 -4.04 4.17 29.72 0.12 -3.91 16 5 C 0.16 6.59 0.86 2.57 0.00 6.60 16 6 C -0.13 -4.67 4.86 30.13 0.15 -4.53 16 7 C 0.07 2.19 6.52 71.89 0.47 2.66 16 8 O -0.38 -12.70 9.92 -148.97 -1.48 -14.18 16 9 C 0.36 17.20 5.85 139.14 0.81 18.01 16 10 N -0.60 -28.11 10.06 -179.19 -1.80 -29.91 16 11 C 0.13 5.87 6.09 39.09 0.24 6.11 16 12 C -0.16 -7.06 8.76 22.55 0.20 -6.86 16 13 C -0.11 -3.95 10.03 22.23 0.22 -3.73 16 14 C -0.16 -4.80 10.04 22.34 0.22 -4.57 16 15 C -0.10 -3.24 10.03 22.23 0.22 -3.02 16 16 C -0.16 -6.18 10.00 22.55 0.23 -5.95 16 17 N -0.68 -33.34 9.11 -184.64 -1.68 -35.02 16 18 C 0.32 14.49 7.61 179.35 1.37 15.86 16 19 S 0.06 2.61 22.31 -56.49 -1.26 1.35 16 20 N -0.37 -15.91 2.47 -479.80 -1.19 -17.10 16 21 C -0.32 -12.85 6.78 84.06 0.57 -12.28 16 22 H 0.12 4.46 6.42 -2.91 -0.02 4.44 16 23 C 0.03 1.02 4.07 84.91 0.35 1.37 16 24 N -0.80 -33.42 11.05 21.66 0.24 -33.18 16 25 Si 0.97 31.40 29.62 68.60 2.03 33.43 16 26 H -0.26 -8.28 7.11 99.48 0.71 -7.58 16 27 H -0.27 -8.78 7.11 99.48 0.71 -8.08 16 28 H -0.26 -8.24 7.11 99.48 0.71 -7.53 16 29 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.06 1.66 8.04 -2.39 -0.02 1.64 16 31 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.05 1.78 8.08 -2.38 -0.02 1.76 16 33 H 0.07 2.60 4.77 -2.39 -0.01 2.59 16 34 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.05 2.35 7.84 -1.71 -0.01 2.34 16 36 H 0.06 2.60 7.36 -1.71 -0.01 2.59 16 37 H 0.07 2.60 8.16 -2.16 -0.02 2.58 16 38 H 0.08 3.14 7.66 -2.13 -0.02 3.13 16 39 H 0.06 2.00 5.20 -2.63 -0.01 1.99 16 40 H 0.12 2.97 8.20 -2.00 -0.02 2.96 16 41 H 0.09 4.23 7.17 -2.91 -0.02 4.21 16 42 H 0.13 3.83 8.06 -2.91 -0.02 3.81 16 43 H 0.15 3.29 8.06 -2.91 -0.02 3.27 16 44 H 0.15 3.50 8.06 -2.91 -0.02 3.47 16 45 H 0.12 4.31 8.06 -2.92 -0.02 4.28 16 46 H 0.05 2.01 9.55 73.80 0.70 2.71 16 47 H 0.29 11.44 8.32 -92.70 -0.77 10.67 16 Total: -1.00 -54.53 382.86 2.96 -51.57 By element: Atomic # 1 Polarization: 39.30 SS G_CDS: 1.72 Total: 41.03 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: 6.37 Total: 2.00 kcal Atomic # 7 Polarization: -110.77 SS G_CDS: -4.43 Total: -115.21 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: -1.48 Total: -14.18 kcal Atomic # 14 Polarization: 31.40 SS G_CDS: 2.03 Total: 33.43 kcal Atomic # 16 Polarization: 2.61 SS G_CDS: -1.26 Total: 1.35 kcal Total: -54.53 2.96 -51.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000018066624.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.578 kcal (2) G-P(sol) polarization free energy of solvation -54.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds