Wall clock time and date at job start Tue Mar 31 2020 05:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.54528 * 1 3 3 C 1.53341 * 107.21025 * 2 1 4 4 C 1.51984 * 107.90918 * 241.18721 * 2 1 3 5 5 C 1.51443 * 115.62220 * 205.74171 * 4 2 1 6 6 C 1.52038 * 113.26859 * 36.53787 * 5 4 2 7 7 C 1.52837 * 110.59478 * 311.73517 * 6 5 4 8 8 O 1.41874 * 107.58041 * 118.29572 * 2 1 3 9 9 C 1.52566 * 108.71201 * 156.92408 * 5 4 2 10 10 N 1.31001 * 126.30820 * 284.88578 * 9 5 4 11 11 C 1.36761 * 119.99806 * 178.94067 * 10 9 5 12 12 C 1.39715 * 120.15794 * 314.72099 * 11 10 9 13 13 C 1.37925 * 119.83596 * 179.72345 * 12 11 10 14 14 C 1.38382 * 120.16226 * 0.58139 * 13 12 11 15 15 C 1.38381 * 120.31619 * 359.69252 * 14 13 12 16 16 C 1.37929 * 120.16258 * 0.02562 * 15 14 13 17 17 N 1.33441 * 105.81661 * 104.03852 * 9 5 4 18 18 C 1.31099 * 111.98636 * 9.58690 * 17 9 5 19 19 S 1.76120 * 124.21158 * 179.91164 * 18 17 9 20 20 N 1.37437 * 112.07569 * 359.97438 * 18 17 9 21 21 C 1.36845 * 124.96304 * 170.21657 * 20 18 17 22 22 H 1.08002 * 120.00123 * 223.05756 * 21 20 18 23 23 C 1.38920 * 120.00023 * 43.06340 * 21 20 18 24 24 N 1.31449 * 120.00146 * 25.90140 * 23 21 20 25 25 Si 1.86804 * 119.99874 * 205.90804 * 23 21 20 26 26 H 1.48505 * 109.46900 * 179.97438 * 25 23 21 27 27 H 1.48497 * 109.46776 * 299.99416 * 25 23 21 28 28 H 1.48492 * 109.47251 * 59.99715 * 25 23 21 29 29 H 1.08999 * 109.46940 * 301.70529 * 1 2 3 30 30 H 1.08999 * 109.47027 * 61.70519 * 1 2 3 31 31 H 1.09001 * 109.47117 * 181.70777 * 1 2 3 32 32 H 1.08994 * 109.47779 * 176.69713 * 3 2 1 33 33 H 1.08998 * 109.46926 * 296.70235 * 3 2 1 34 34 H 1.09006 * 109.46874 * 56.69367 * 3 2 1 35 35 H 1.10203 * 108.68135 * 83.35962 * 4 2 1 36 36 H 1.10191 * 108.71785 * 328.24499 * 4 2 1 37 37 H 1.09325 * 109.51470 * 72.22251 * 6 5 4 38 38 H 1.09308 * 109.49446 * 191.12394 * 6 5 4 39 39 H 1.09749 * 108.76795 * 176.99660 * 7 6 5 40 40 H 1.08233 * 111.31828 * 296.35105 * 7 6 5 41 41 H 1.08001 * 120.07826 * 0.02562 * 12 11 10 42 42 H 1.07997 * 119.92061 * 180.31350 * 13 12 11 43 43 H 1.07995 * 119.84493 * 179.71480 * 14 13 12 44 44 H 1.08002 * 119.92224 * 180.02562 * 15 14 13 45 45 H 1.08003 * 120.08092 * 180.02562 * 16 15 14 46 46 H 1.40997 * 100.00309 * 0.07185 * 19 18 17 47 47 H 0.96997 * 120.00204 * 4.36110 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5453 0.0000 0.0000 3 6 1.9990 1.4648 0.0000 4 6 2.0126 -0.6970 -1.2672 5 6 3.3844 -1.3347 -1.1959 6 6 3.6896 -1.9532 0.1590 7 6 3.3545 -0.9749 1.2844 8 8 1.9738 -0.6411 1.1909 9 6 3.4696 -2.4319 -2.2526 10 7 2.9081 -3.6139 -2.1904 11 6 3.0521 -4.4946 -3.2268 12 6 2.8905 -4.0601 -4.5448 13 6 3.0428 -4.9527 -5.5851 14 6 3.3431 -6.2784 -5.3255 15 6 3.4990 -6.7170 -4.0224 16 6 3.3553 -5.8345 -2.9722 17 7 4.2098 -1.9276 -3.2417 18 6 4.7682 -0.7900 -2.9060 19 16 5.8125 0.1515 -3.9666 20 7 4.4448 -0.4143 -1.6242 21 6 5.0257 0.6184 -0.9395 22 1 5.2978 0.4930 0.0981 23 6 5.2654 1.8281 -1.5791 24 7 4.5293 2.1847 -2.6081 25 14 6.6341 2.9478 -0.9771 26 1 6.6839 4.1674 -1.8228 27 1 6.3740 3.3331 0.4332 28 1 7.9327 2.2327 -1.0635 29 1 -0.3633 0.5401 0.8743 30 1 -0.3633 0.4871 -0.9049 31 1 -0.3633 -1.0272 0.0306 32 1 3.0864 1.5084 0.0592 33 1 1.6654 1.9484 -0.9181 34 1 1.5674 1.9788 0.8589 35 1 2.0063 0.0318 -2.0937 36 1 1.2770 -1.4719 -1.5364 37 1 3.0995 -2.8648 0.2855 38 1 4.7495 -2.2155 0.2098 39 1 3.5345 -1.4695 2.2474 40 1 3.9751 -0.0896 1.2340 41 1 2.6516 -3.0267 -4.7486 42 1 2.9232 -4.6172 -6.6047 43 1 3.4568 -6.9739 -6.1439 44 1 3.7338 -7.7530 -3.8271 45 1 3.4777 -6.1781 -1.9556 46 1 5.8011 -0.6692 -5.1131 47 1 3.7788 1.6343 -2.8816 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000018067076.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:13 Heat of formation + Delta-G solvation = 49.032646 kcal Electronic energy + Delta-G solvation = -31732.660962 eV Core-core repulsion = 27814.634033 eV Total energy + Delta-G solvation = -3918.026929 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 359.141 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.14789 -38.69458 -38.22963 -35.29088 -33.56703 -33.52034 -32.76836 -30.55428 -30.26667 -28.44102 -27.77856 -26.84681 -25.09010 -24.85715 -23.02203 -21.97565 -21.78389 -20.91968 -19.35791 -18.92028 -18.29685 -16.56809 -16.43251 -15.92424 -15.84635 -15.35549 -14.91225 -14.79970 -14.61054 -14.33018 -14.11223 -13.93893 -13.61007 -13.18791 -12.95261 -12.89804 -12.74244 -12.42440 -12.26156 -12.15930 -11.91982 -11.59558 -11.48118 -11.32424 -11.21528 -11.13757 -11.00828 -10.76603 -10.67582 -10.56212 -10.51873 -10.39557 -10.25950 -9.90511 -9.45316 -9.34542 -9.11118 -8.65512 -8.38105 -8.02559 -7.75262 -7.21572 -6.86821 -4.67387 1.35064 1.86935 1.99958 2.33212 2.91519 3.00864 3.07769 3.23853 3.64343 3.87947 4.02539 4.20921 4.36742 4.43195 4.56795 4.99460 5.10241 5.19322 5.31758 5.41053 5.47320 5.53980 5.58982 5.65272 5.80417 5.83727 5.90173 5.95559 5.98920 6.01561 6.08165 6.16242 6.17588 6.18110 6.25768 6.29664 6.35976 6.44150 6.49502 6.63577 6.66221 6.84792 6.88591 7.04821 7.07073 7.26131 7.37931 7.51136 7.68286 7.78607 8.31366 8.55195 8.83324 9.12236 9.85303 Molecular weight = 359.14amu Principal moments of inertia in cm(-1) A = 0.010177 B = 0.004730 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2750.640666 B = 5918.336243 C = 7635.582096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.132 3.868 3 C -0.178 4.178 4 C -0.115 4.115 5 C 0.155 3.845 6 C -0.129 4.129 7 C 0.064 3.936 8 O -0.375 6.375 9 C 0.379 3.621 10 N -0.575 5.575 11 C 0.164 3.836 12 C -0.143 4.143 13 C -0.109 4.109 14 C -0.167 4.167 15 C -0.110 4.110 16 C -0.144 4.144 17 N -0.652 5.652 18 C 0.315 3.685 19 S 0.046 5.954 20 N -0.380 5.380 21 C -0.379 4.379 22 H 0.104 0.896 23 C 0.017 3.983 24 N -0.782 5.782 25 Si 1.071 2.929 26 H -0.270 1.270 27 H -0.277 1.277 28 H -0.272 1.272 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.088 0.912 33 H 0.057 0.943 34 H 0.051 0.949 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.068 0.932 41 H 0.116 0.884 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.112 0.888 45 H 0.114 0.886 46 H 0.057 0.943 47 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.830 -1.283 2.155 2.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.092 3.908 3 C -0.236 4.236 4 C -0.154 4.154 5 C 0.065 3.935 6 C -0.168 4.168 7 C -0.012 4.012 8 O -0.294 6.294 9 C 0.101 3.899 10 N -0.303 5.303 11 C 0.059 3.941 12 C -0.165 4.165 13 C -0.128 4.128 14 C -0.186 4.186 15 C -0.128 4.128 16 C -0.165 4.165 17 N -0.399 5.399 18 C -0.056 4.056 19 S 0.205 5.795 20 N -0.073 5.073 21 C -0.510 4.510 22 H 0.122 0.878 23 C -0.201 4.201 24 N -0.410 5.410 25 Si 0.893 3.107 26 H -0.194 1.194 27 H -0.203 1.203 28 H -0.197 1.197 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.107 0.893 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.110 0.890 38 H 0.091 0.909 39 H 0.104 0.896 40 H 0.086 0.914 41 H 0.134 0.866 42 H 0.126 0.874 43 H 0.126 0.874 44 H 0.130 0.870 45 H 0.133 0.867 46 H 0.021 0.979 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.056 0.053 1.583 1.585 hybrid contribution -1.100 -1.996 -0.280 2.296 sum -1.155 -1.943 1.303 2.609 Atomic orbital electron populations 1.22187 0.93235 1.02331 1.01897 1.21127 0.93949 0.91709 0.84007 1.22595 1.04925 0.94890 1.01146 1.21841 0.94040 1.00822 0.98732 1.20238 0.88607 0.89237 0.95426 1.21913 1.02913 0.99632 0.92305 1.22478 0.83037 0.97959 0.97727 1.87378 1.25042 1.79020 1.38004 1.22827 0.88664 0.90402 0.88001 1.69084 1.31582 1.01455 1.28138 1.18629 0.93082 0.92780 0.89568 1.21679 1.02827 0.99325 0.92644 1.20889 1.00069 0.93571 0.98232 1.20846 1.05669 0.95804 0.96259 1.20815 1.00644 0.98606 0.92768 1.20904 1.04189 0.92700 0.98664 1.70528 1.27522 1.11012 1.30815 1.25263 0.97641 0.92312 0.90384 1.87527 1.56734 1.24667 1.10617 1.44346 1.26294 1.26020 1.10690 1.20477 1.38534 0.92025 0.99942 0.87832 1.26839 1.01298 0.96290 0.95642 1.70699 1.12009 1.36393 1.21900 0.83421 0.74709 0.76020 0.76532 1.19421 1.20257 1.19690 0.92007 0.91680 0.92149 0.89339 0.92432 0.93030 0.91103 0.90309 0.88970 0.90864 0.89625 0.91358 0.86592 0.87412 0.87363 0.87019 0.86747 0.97866 0.90169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 8.41 37.96 0.32 -1.69 16 2 C 0.13 2.22 1.09 -90.16 -0.10 2.12 16 3 C -0.18 -3.02 8.49 37.33 0.32 -2.70 16 4 C -0.11 -2.16 4.16 -28.03 -0.12 -2.28 16 5 C 0.16 3.10 0.82 -133.16 -0.11 2.99 16 6 C -0.13 -2.35 4.84 -27.30 -0.13 -2.48 16 7 C 0.06 1.06 6.54 37.07 0.24 1.30 16 8 O -0.38 -6.51 9.84 -35.22 -0.35 -6.86 16 9 C 0.38 8.35 5.96 -155.51 -0.93 7.42 16 10 N -0.57 -12.71 10.10 -8.02 -0.08 -12.79 16 11 C 0.16 3.49 6.09 -84.56 -0.52 2.98 16 12 C -0.14 -2.95 8.76 -39.14 -0.34 -3.29 16 13 C -0.11 -1.93 10.03 -39.64 -0.40 -2.32 16 14 C -0.17 -2.71 10.04 -39.48 -0.40 -3.10 16 15 C -0.11 -1.81 10.03 -39.64 -0.40 -2.21 16 16 C -0.14 -2.73 10.00 -39.14 -0.39 -3.13 16 17 N -0.65 -14.83 9.13 -9.72 -0.09 -14.92 16 18 C 0.31 6.86 7.16 -87.65 -0.63 6.23 16 19 S 0.05 0.90 22.22 -107.50 -2.39 -1.49 16 20 N -0.38 -7.90 2.27 -103.00 -0.23 -8.14 16 21 C -0.38 -7.70 6.59 -15.06 -0.10 -7.80 16 22 H 0.10 2.06 6.27 -52.49 -0.33 1.73 16 23 C 0.02 0.34 3.77 -17.46 -0.07 0.28 16 24 N -0.78 -16.83 11.55 55.49 0.64 -16.19 16 25 Si 1.07 18.42 29.99 -169.99 -5.10 13.33 16 26 H -0.27 -4.77 7.11 56.52 0.40 -4.37 16 27 H -0.28 -4.54 7.11 56.52 0.40 -4.13 16 28 H -0.27 -4.59 7.11 56.52 0.40 -4.19 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.87 8.10 -51.93 -0.42 0.45 16 32 H 0.09 1.66 4.73 -51.93 -0.25 1.41 16 33 H 0.06 0.99 7.98 -51.93 -0.41 0.57 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.07 1.43 7.79 -51.24 -0.40 1.03 16 36 H 0.08 1.53 7.48 -51.25 -0.38 1.14 16 37 H 0.09 1.73 7.76 -51.75 -0.40 1.33 16 38 H 0.07 1.36 8.17 -51.75 -0.42 0.94 16 39 H 0.09 1.20 8.20 -51.50 -0.42 0.78 16 40 H 0.07 1.16 4.88 -52.36 -0.26 0.91 16 41 H 0.12 2.53 7.17 -52.49 -0.38 2.16 16 42 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 43 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 44 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 45 H 0.11 2.05 8.06 -52.48 -0.42 1.63 16 46 H 0.06 1.06 9.55 96.90 0.93 1.98 16 47 H 0.29 6.48 7.42 -40.82 -0.30 6.18 16 LS Contribution 381.36 15.07 5.75 5.75 Total: -1.00 -24.12 381.36 -10.79 -34.91 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: -5.20 Total: 14.08 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: -3.74 Total: -7.69 kcal Atomic # 7 Polarization: -52.27 SS G_CDS: 0.24 Total: -52.03 kcal Atomic # 8 Polarization: -6.51 SS G_CDS: -0.35 Total: -6.86 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.10 Total: 13.33 kcal Atomic # 16 Polarization: 0.90 SS G_CDS: -2.39 Total: -1.49 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -24.12 -10.79 -34.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000018067076.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.940 kcal (2) G-P(sol) polarization free energy of solvation -24.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds