Wall clock time and date at job start Tue Mar 31 2020 05:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.54528 * 1 3 3 C 1.53341 * 107.21025 * 2 1 4 4 C 1.51984 * 107.90918 * 241.18721 * 2 1 3 5 5 C 1.51443 * 115.62220 * 205.74171 * 4 2 1 6 6 C 1.52038 * 113.26859 * 36.53787 * 5 4 2 7 7 C 1.52837 * 110.59478 * 311.73517 * 6 5 4 8 8 O 1.41874 * 107.58041 * 118.29572 * 2 1 3 9 9 C 1.52566 * 108.71201 * 156.92408 * 5 4 2 10 10 N 1.31001 * 126.30820 * 284.88578 * 9 5 4 11 11 C 1.36761 * 119.99806 * 178.94067 * 10 9 5 12 12 C 1.39715 * 120.15794 * 314.72099 * 11 10 9 13 13 C 1.37925 * 119.83596 * 179.72345 * 12 11 10 14 14 C 1.38382 * 120.16226 * 0.58139 * 13 12 11 15 15 C 1.38381 * 120.31619 * 359.69252 * 14 13 12 16 16 C 1.37929 * 120.16258 * 0.02562 * 15 14 13 17 17 N 1.33441 * 105.81661 * 104.03852 * 9 5 4 18 18 C 1.31099 * 111.98636 * 9.58690 * 17 9 5 19 19 S 1.76120 * 124.21158 * 179.91164 * 18 17 9 20 20 N 1.37437 * 112.07569 * 359.97438 * 18 17 9 21 21 C 1.36845 * 124.96304 * 170.21657 * 20 18 17 22 22 H 1.08002 * 120.00123 * 223.05756 * 21 20 18 23 23 C 1.38920 * 120.00023 * 43.06340 * 21 20 18 24 24 N 1.31449 * 120.00146 * 25.90140 * 23 21 20 25 25 Si 1.86804 * 119.99874 * 205.90804 * 23 21 20 26 26 H 1.48505 * 109.46900 * 179.97438 * 25 23 21 27 27 H 1.48497 * 109.46776 * 299.99416 * 25 23 21 28 28 H 1.48492 * 109.47251 * 59.99715 * 25 23 21 29 29 H 1.08999 * 109.46940 * 301.70529 * 1 2 3 30 30 H 1.08999 * 109.47027 * 61.70519 * 1 2 3 31 31 H 1.09001 * 109.47117 * 181.70777 * 1 2 3 32 32 H 1.08994 * 109.47779 * 176.69713 * 3 2 1 33 33 H 1.08998 * 109.46926 * 296.70235 * 3 2 1 34 34 H 1.09006 * 109.46874 * 56.69367 * 3 2 1 35 35 H 1.10203 * 108.68135 * 83.35962 * 4 2 1 36 36 H 1.10191 * 108.71785 * 328.24499 * 4 2 1 37 37 H 1.09325 * 109.51470 * 72.22251 * 6 5 4 38 38 H 1.09308 * 109.49446 * 191.12394 * 6 5 4 39 39 H 1.09749 * 108.76795 * 176.99660 * 7 6 5 40 40 H 1.08233 * 111.31828 * 296.35105 * 7 6 5 41 41 H 1.08001 * 120.07826 * 0.02562 * 12 11 10 42 42 H 1.07997 * 119.92061 * 180.31350 * 13 12 11 43 43 H 1.07995 * 119.84493 * 179.71480 * 14 13 12 44 44 H 1.08002 * 119.92224 * 180.02562 * 15 14 13 45 45 H 1.08003 * 120.08092 * 180.02562 * 16 15 14 46 46 H 1.40997 * 100.00309 * 0.07185 * 19 18 17 47 47 H 0.96997 * 120.00204 * 4.36110 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5453 0.0000 0.0000 3 6 1.9990 1.4648 0.0000 4 6 2.0126 -0.6970 -1.2672 5 6 3.3844 -1.3347 -1.1959 6 6 3.6896 -1.9532 0.1590 7 6 3.3545 -0.9749 1.2844 8 8 1.9738 -0.6411 1.1909 9 6 3.4696 -2.4319 -2.2526 10 7 2.9081 -3.6139 -2.1904 11 6 3.0521 -4.4946 -3.2268 12 6 2.8905 -4.0601 -4.5448 13 6 3.0428 -4.9527 -5.5851 14 6 3.3431 -6.2784 -5.3255 15 6 3.4990 -6.7170 -4.0224 16 6 3.3553 -5.8345 -2.9722 17 7 4.2098 -1.9276 -3.2417 18 6 4.7682 -0.7900 -2.9060 19 16 5.8125 0.1515 -3.9666 20 7 4.4448 -0.4143 -1.6242 21 6 5.0257 0.6184 -0.9395 22 1 5.2978 0.4930 0.0981 23 6 5.2654 1.8281 -1.5791 24 7 4.5293 2.1847 -2.6081 25 14 6.6341 2.9478 -0.9771 26 1 6.6839 4.1674 -1.8228 27 1 6.3740 3.3331 0.4332 28 1 7.9327 2.2327 -1.0635 29 1 -0.3633 0.5401 0.8743 30 1 -0.3633 0.4871 -0.9049 31 1 -0.3633 -1.0272 0.0306 32 1 3.0864 1.5084 0.0592 33 1 1.6654 1.9484 -0.9181 34 1 1.5674 1.9788 0.8589 35 1 2.0063 0.0318 -2.0937 36 1 1.2770 -1.4719 -1.5364 37 1 3.0995 -2.8648 0.2855 38 1 4.7495 -2.2155 0.2098 39 1 3.5345 -1.4695 2.2474 40 1 3.9751 -0.0896 1.2340 41 1 2.6516 -3.0267 -4.7486 42 1 2.9232 -4.6172 -6.6047 43 1 3.4568 -6.9739 -6.1439 44 1 3.7338 -7.7530 -3.8271 45 1 3.4777 -6.1781 -1.9556 46 1 5.8011 -0.6692 -5.1131 47 1 3.7788 1.6343 -2.8816 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000018067076.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:12 Heat of formation + Delta-G solvation = 39.263091 kcal Electronic energy + Delta-G solvation = -31733.084602 eV Core-core repulsion = 27814.634033 eV Total energy + Delta-G solvation = -3918.450569 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 359.141 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.71287 -40.13172 -39.67198 -36.86496 -35.12109 -34.89104 -34.30169 -32.11836 -31.70782 -29.91485 -29.24333 -28.12392 -26.68056 -26.39821 -24.47958 -23.45325 -23.25167 -22.40336 -20.90500 -20.44700 -19.78730 -18.12586 -17.94563 -17.38548 -17.30266 -16.82707 -16.44994 -16.26700 -16.06876 -15.77014 -15.52270 -15.41858 -15.03191 -14.68777 -14.44467 -14.30381 -14.14650 -13.87571 -13.76417 -13.63757 -13.15246 -13.05638 -12.90403 -12.70797 -12.60269 -12.57443 -12.43647 -12.24172 -12.12637 -12.01533 -11.93461 -11.84270 -11.77355 -11.34636 -11.01910 -10.85175 -10.60888 -10.18662 -9.81306 -9.63974 -9.34488 -8.82731 -8.44859 -6.31332 -0.22335 0.27623 0.56284 0.82600 1.34663 1.62498 1.68468 1.88550 2.13988 2.31047 2.61641 2.75068 2.81363 2.86256 3.08490 3.52874 3.62556 3.78937 3.87469 4.07764 4.11730 4.17461 4.20362 4.30062 4.36629 4.42825 4.50552 4.52183 4.60813 4.65183 4.68093 4.71378 4.76388 4.79642 4.88141 4.90574 4.96329 4.99161 5.14706 5.20590 5.20803 5.42036 5.45517 5.60515 5.65786 5.73346 5.78373 5.88665 6.22116 6.41499 6.70827 6.92372 7.21374 7.50219 8.18564 Molecular weight = 359.14amu Principal moments of inertia in cm(-1) A = 0.010177 B = 0.004730 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2750.640666 B = 5918.336243 C = 7635.582096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.130 3.870 3 C -0.169 4.169 4 C -0.102 4.102 5 C 0.155 3.845 6 C -0.122 4.122 7 C 0.067 3.933 8 O -0.377 6.377 9 C 0.361 3.639 10 N -0.587 5.587 11 C 0.126 3.874 12 C -0.164 4.164 13 C -0.113 4.113 14 C -0.156 4.156 15 C -0.103 4.103 16 C -0.157 4.157 17 N -0.673 5.673 18 C 0.291 3.709 19 S 0.056 5.944 20 N -0.379 5.379 21 C -0.380 4.380 22 H 0.111 0.889 23 C -0.002 4.002 24 N -0.794 5.794 25 Si 1.104 2.896 26 H -0.277 1.277 27 H -0.259 1.259 28 H -0.265 1.265 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.048 0.952 34 H 0.069 0.931 35 H 0.049 0.951 36 H 0.066 0.934 37 H 0.084 0.916 38 H 0.066 0.934 39 H 0.116 0.884 40 H 0.065 0.935 41 H 0.089 0.911 42 H 0.130 0.870 43 H 0.148 0.852 44 H 0.150 0.850 45 H 0.118 0.882 46 H 0.063 0.937 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.426 -2.087 2.805 3.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.090 3.910 3 C -0.226 4.226 4 C -0.142 4.142 5 C 0.064 3.936 6 C -0.161 4.161 7 C -0.009 4.009 8 O -0.296 6.296 9 C 0.083 3.917 10 N -0.316 5.316 11 C 0.023 3.977 12 C -0.186 4.186 13 C -0.132 4.132 14 C -0.175 4.175 15 C -0.121 4.121 16 C -0.178 4.178 17 N -0.421 5.421 18 C -0.079 4.079 19 S 0.215 5.785 20 N -0.071 5.071 21 C -0.510 4.510 22 H 0.128 0.872 23 C -0.216 4.216 24 N -0.422 5.422 25 Si 0.922 3.078 26 H -0.202 1.202 27 H -0.184 1.184 28 H -0.190 1.190 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.068 0.932 34 H 0.088 0.912 35 H 0.067 0.933 36 H 0.084 0.916 37 H 0.103 0.897 38 H 0.085 0.915 39 H 0.134 0.866 40 H 0.083 0.917 41 H 0.107 0.893 42 H 0.147 0.853 43 H 0.166 0.834 44 H 0.168 0.832 45 H 0.136 0.864 46 H 0.028 0.972 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.332 -0.776 2.239 2.392 hybrid contribution -1.228 -1.852 -0.574 2.295 sum -0.895 -2.628 1.664 3.237 Atomic orbital electron populations 1.22172 0.91184 1.02710 1.03137 1.21194 0.95532 0.91309 0.82938 1.22481 1.03707 0.94920 1.01493 1.21770 0.93323 0.99774 0.99314 1.20335 0.88819 0.88706 0.95716 1.21864 1.02264 0.99770 0.92170 1.22544 0.82619 0.97475 0.98246 1.87387 1.25442 1.78980 1.37811 1.23143 0.88883 0.90996 0.88677 1.69095 1.31776 1.01766 1.28918 1.18964 0.95146 0.93797 0.89786 1.21574 1.04742 0.98755 0.93517 1.21196 0.99360 0.94110 0.98514 1.21316 1.03251 0.95535 0.97421 1.21263 0.98725 0.99957 0.92154 1.21128 1.04521 0.92193 0.99908 1.70471 1.28271 1.11686 1.31650 1.25560 0.98520 0.92644 0.91193 1.87300 1.56107 1.24556 1.10578 1.44445 1.26194 1.26005 1.10488 1.20708 1.38123 0.91987 1.00233 0.87175 1.27784 1.01859 0.96992 0.94994 1.70784 1.12161 1.36400 1.22841 0.83022 0.73151 0.74575 0.77010 1.20156 1.18353 1.18983 0.90266 0.90916 0.92264 0.91126 0.93242 0.91221 0.93267 0.91572 0.89736 0.91530 0.86608 0.91712 0.89263 0.85257 0.83382 0.83185 0.86369 0.97232 0.91704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.77 8.41 72.50 0.61 -3.16 16 2 C 0.13 4.35 1.09 -10.49 -0.01 4.33 16 3 C -0.17 -5.61 8.49 72.10 0.61 -5.00 16 4 C -0.10 -3.99 4.16 29.75 0.12 -3.86 16 5 C 0.15 6.36 0.82 2.58 0.00 6.36 16 6 C -0.12 -4.49 4.84 30.22 0.15 -4.34 16 7 C 0.07 2.14 6.54 71.93 0.47 2.61 16 8 O -0.38 -12.64 9.84 -148.95 -1.47 -14.10 16 9 C 0.36 16.64 5.96 139.09 0.83 17.47 16 10 N -0.59 -27.12 10.10 -179.29 -1.81 -28.93 16 11 C 0.13 5.55 6.09 39.09 0.24 5.79 16 12 C -0.16 -6.97 8.76 22.55 0.20 -6.77 16 13 C -0.11 -3.90 10.03 22.23 0.22 -3.67 16 14 C -0.16 -4.61 10.04 22.34 0.22 -4.38 16 15 C -0.10 -3.12 10.03 22.23 0.22 -2.89 16 16 C -0.16 -5.90 10.00 22.55 0.23 -5.67 16 17 N -0.67 -32.05 9.13 -184.67 -1.69 -33.74 16 18 C 0.29 13.13 7.16 179.31 1.28 14.41 16 19 S 0.06 2.25 22.22 -56.49 -1.26 0.99 16 20 N -0.38 -16.12 2.27 -479.79 -1.09 -17.21 16 21 C -0.38 -15.44 6.59 84.07 0.55 -14.89 16 22 H 0.11 4.30 6.27 -2.91 -0.02 4.28 16 23 C 0.00 -0.08 3.77 84.91 0.32 0.25 16 24 N -0.79 -34.55 11.55 21.66 0.25 -34.30 16 25 Si 1.10 35.98 29.99 68.60 2.06 38.04 16 26 H -0.28 -9.33 7.11 99.48 0.71 -8.62 16 27 H -0.26 -7.70 7.11 99.48 0.71 -7.00 16 28 H -0.27 -8.35 7.11 99.48 0.71 -7.65 16 29 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.06 1.66 8.10 -2.39 -0.02 1.64 16 32 H 0.07 2.61 4.73 -2.39 -0.01 2.60 16 33 H 0.05 1.70 7.98 -2.39 -0.02 1.68 16 34 H 0.07 2.03 8.14 -2.38 -0.02 2.02 16 35 H 0.05 2.10 7.79 -1.74 -0.01 2.08 16 36 H 0.07 2.70 7.48 -1.75 -0.01 2.69 16 37 H 0.08 3.24 7.76 -2.21 -0.02 3.22 16 38 H 0.07 2.51 8.17 -2.22 -0.02 2.49 16 39 H 0.12 2.99 8.20 -1.99 -0.02 2.97 16 40 H 0.06 2.12 4.88 -2.79 -0.01 2.11 16 41 H 0.09 4.17 7.17 -2.91 -0.02 4.15 16 42 H 0.13 3.78 8.06 -2.91 -0.02 3.75 16 43 H 0.15 3.21 8.06 -2.91 -0.02 3.18 16 44 H 0.15 3.38 8.06 -2.91 -0.02 3.35 16 45 H 0.12 4.22 8.06 -2.91 -0.02 4.19 16 46 H 0.06 2.41 9.55 73.80 0.70 3.11 16 47 H 0.27 12.71 7.42 -92.71 -0.69 12.02 16 Total: -1.00 -53.66 381.36 3.08 -50.59 By element: Atomic # 1 Polarization: 40.28 SS G_CDS: 1.80 Total: 42.08 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: 6.27 Total: -3.42 kcal Atomic # 7 Polarization: -109.85 SS G_CDS: -4.34 Total: -114.18 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: -1.47 Total: -14.10 kcal Atomic # 14 Polarization: 35.98 SS G_CDS: 2.06 Total: 38.04 kcal Atomic # 16 Polarization: 2.25 SS G_CDS: -1.26 Total: 0.99 kcal Total: -53.66 3.08 -50.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000018067076.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.852 kcal (2) G-P(sol) polarization free energy of solvation -53.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds