Wall clock time and date at job start Tue Mar 31 2020 05:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47115 * 2 1 4 4 N 1.46500 * 109.47311 * 179.97438 * 3 2 1 5 5 N 1.29024 * 126.43906 * 269.97872 * 4 3 2 6 6 N 1.28739 * 108.80632 * 180.02562 * 5 4 3 7 7 N 1.28840 * 109.39604 * 359.76345 * 6 5 4 8 8 C 1.31070 * 107.99292 * 0.37590 * 7 6 5 9 9 C 1.50697 * 126.65923 * 179.89719 * 8 7 6 10 10 O 1.45201 * 109.47180 * 269.68620 * 9 8 7 11 11 C 1.34748 * 117.00368 * 179.97438 * 10 9 8 12 12 O 1.21507 * 119.99755 * 0.02562 * 11 10 9 13 13 C 1.47468 * 120.00281 * 179.97438 * 11 10 9 14 14 C 1.39836 * 120.06237 * 359.73106 * 13 11 10 15 15 C 1.37615 * 119.92712 * 179.76294 * 14 13 11 16 16 C 1.39270 * 120.06478 * 0.51022 * 15 14 13 17 17 N 1.39077 * 119.93002 * 179.72055 * 16 15 14 18 18 C 1.34778 * 119.99807 * 213.66540 * 17 16 15 19 19 O 1.21722 * 120.00406 * 5.28288 * 18 17 16 20 20 C 1.46202 * 119.99669 * 185.27565 * 18 17 16 21 21 H 1.08000 * 120.00099 * 0.02562 * 20 18 17 22 22 C 1.40123 * 119.99759 * 179.97438 * 20 18 17 23 23 N 1.30639 * 119.99956 * 0.02562 * 22 20 18 24 24 Si 1.86797 * 119.99870 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47343 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47218 * 120.00593 * 24 22 20 27 27 H 1.48508 * 109.47020 * 240.00158 * 24 22 20 28 28 C 1.39275 * 120.14042 * 359.74493 * 16 15 14 29 29 C 1.37612 * 120.06298 * 359.97438 * 28 16 15 30 30 H 1.09001 * 109.47206 * 300.00171 * 1 2 3 31 31 H 1.08994 * 109.46945 * 60.00537 * 1 2 3 32 32 H 1.09008 * 109.46945 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47564 * 239.99788 * 2 1 3 34 34 H 1.09002 * 109.46867 * 119.99801 * 2 1 3 35 35 H 1.09001 * 109.47223 * 59.99840 * 3 2 1 36 36 H 1.09002 * 109.46951 * 300.00202 * 3 2 1 37 37 H 1.09000 * 109.47039 * 149.69106 * 9 8 7 38 38 H 1.09000 * 109.47538 * 29.68810 * 9 8 7 39 39 H 1.07995 * 120.04187 * 0.02562 * 14 13 11 40 40 H 1.07993 * 119.96832 * 180.23418 * 15 14 13 41 41 H 0.96999 * 120.00024 * 33.66435 * 17 16 15 42 42 H 0.97001 * 119.99733 * 180.02562 * 23 22 20 43 43 H 1.07996 * 119.96679 * 179.97438 * 28 16 15 44 44 H 1.07995 * 120.02999 * 179.97438 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 7 4.2710 1.4431 1.0389 6 7 5.4980 1.4435 0.6495 7 7 5.5382 1.4382 -0.6383 8 6 4.3049 1.4424 -1.0819 9 6 3.8673 1.4410 -2.5239 10 8 3.7255 2.8095 -2.9881 11 6 3.3380 2.9849 -4.2667 12 8 3.1240 2.0206 -4.9743 13 6 3.1726 4.3471 -4.8068 14 6 3.4121 5.4577 -3.9917 15 6 3.2616 6.7277 -4.5001 16 6 2.8609 6.9072 -5.8218 17 7 2.7041 8.1918 -6.3309 18 6 1.7494 8.4409 -7.2491 19 8 0.9628 7.5662 -7.5619 20 6 1.6586 9.7617 -7.8694 21 1 2.3567 10.5377 -7.5921 22 6 0.6664 10.0204 -8.8244 23 7 -0.1777 9.0816 -9.1602 24 14 0.5508 11.7078 -9.6174 25 1 1.6144 12.5867 -9.0684 26 1 0.7248 11.5774 -11.0864 27 1 -0.7795 12.3009 -9.3273 28 6 2.6165 5.8029 -6.6345 29 6 2.7709 4.5306 -6.1336 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6766 1.9563 -0.8900 37 1 2.9107 0.9263 -2.6128 38 1 4.6139 0.9274 -3.1297 39 1 3.7189 5.3192 -2.9656 40 1 3.4500 7.5859 -3.8722 41 1 3.2817 8.9086 -6.0252 42 1 -0.8643 9.2607 -9.8216 43 1 2.3056 5.9454 -7.6589 44 1 2.5808 3.6747 -6.7642 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000018347832.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:34 Heat of formation + Delta-G solvation = 18.168029 kcal Electronic energy + Delta-G solvation = -30275.659278 eV Core-core repulsion = 25810.000744 eV Total energy + Delta-G solvation = -4465.658534 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 359.143 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.61556 -40.65008 -39.28890 -37.34488 -37.09475 -36.54512 -33.88190 -33.76044 -33.31472 -32.64725 -30.70040 -29.91727 -28.63917 -27.62829 -26.55493 -24.05773 -23.84250 -22.98513 -22.52330 -21.94451 -21.12414 -20.01563 -18.20453 -18.19290 -17.68075 -17.37691 -17.05081 -16.66800 -16.45008 -15.97243 -15.66719 -15.34891 -14.61315 -14.35770 -14.24084 -14.18492 -13.97571 -13.52963 -13.39432 -13.22750 -13.12909 -12.84076 -12.79226 -12.68995 -12.41988 -12.31040 -12.16672 -12.00505 -11.63744 -11.50595 -11.41610 -11.23501 -11.22569 -11.12092 -10.91251 -10.81130 -10.76232 -10.43045 -10.42657 -9.61169 -9.07158 -8.74283 -7.97565 -7.42015 -6.50999 -4.99064 0.62086 0.97030 1.43252 1.72566 1.74952 2.54488 2.64066 2.97329 3.06097 3.10302 3.44476 3.63826 3.85441 3.94438 3.99980 4.04207 4.33381 4.36681 4.36972 4.48447 4.57243 4.67648 4.82362 4.85935 4.96718 4.98248 5.14927 5.20182 5.21242 5.29730 5.38224 5.44468 5.53445 5.65466 5.68125 5.77963 5.95738 6.02649 6.30904 6.45550 6.70861 6.78884 7.05955 7.14804 7.50529 7.65813 7.78345 7.95886 8.18293 8.69014 8.96142 10.17096 10.38825 Molecular weight = 359.14amu Principal moments of inertia in cm(-1) A = 0.018332 B = 0.001745 C = 0.001705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.009874 B =16041.622435 C =16414.309970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.141 4.141 3 C 0.105 3.895 4 N -0.291 5.291 5 N -0.085 5.085 6 N -0.074 5.074 7 N -0.277 5.277 8 C 0.181 3.819 9 C 0.152 3.848 10 O -0.352 6.352 11 C 0.524 3.476 12 O -0.512 6.512 13 C -0.190 4.190 14 C -0.034 4.034 15 C -0.195 4.195 16 C 0.241 3.759 17 N -0.693 5.693 18 C 0.537 3.463 19 O -0.555 6.555 20 C -0.534 4.534 21 H 0.075 0.925 22 C 0.085 3.915 23 N -0.755 5.755 24 Si 0.915 3.085 25 H -0.262 1.262 26 H -0.273 1.273 27 H -0.274 1.274 28 C -0.147 4.147 29 C -0.025 4.025 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.118 0.882 36 H 0.115 0.885 37 H 0.099 0.901 38 H 0.116 0.884 39 H 0.128 0.872 40 H 0.127 0.873 41 H 0.398 0.602 42 H 0.274 0.726 43 H 0.149 0.851 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.535 -13.380 15.186 20.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.180 4.180 3 C -0.016 4.016 4 N -0.094 5.094 5 N -0.070 5.070 6 N -0.067 5.067 7 N -0.129 5.129 8 C -0.097 4.097 9 C 0.075 3.925 10 O -0.269 6.269 11 C 0.371 3.629 12 O -0.402 6.402 13 C -0.193 4.193 14 C -0.053 4.053 15 C -0.217 4.217 16 C 0.138 3.862 17 N -0.334 5.334 18 C 0.344 3.656 19 O -0.436 6.436 20 C -0.570 4.570 21 H 0.093 0.907 22 C -0.137 4.137 23 N -0.383 5.383 24 Si 0.739 3.261 25 H -0.185 1.185 26 H -0.199 1.199 27 H -0.199 1.199 28 C -0.168 4.168 29 C -0.044 4.044 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.137 0.863 36 H 0.133 0.867 37 H 0.117 0.883 38 H 0.134 0.866 39 H 0.146 0.854 40 H 0.145 0.855 41 H 0.232 0.768 42 H 0.085 0.915 43 H 0.167 0.833 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.688 -14.238 15.563 21.263 hybrid contribution -0.604 1.115 -0.682 1.440 sum 2.083 -13.122 14.881 19.949 Atomic orbital electron populations 1.21704 0.92920 1.03275 1.02965 1.21954 0.98042 0.93895 1.04092 1.22557 0.70980 1.00763 1.07326 1.48666 1.10750 1.45986 1.04018 1.78908 0.97956 1.17580 1.12580 1.78691 1.09589 1.15002 1.03462 1.75063 1.17306 1.16834 1.03654 1.25410 0.86953 1.04197 0.93165 1.20936 1.03753 0.83254 0.84586 1.86609 1.80405 1.29002 1.30845 1.21307 0.72637 0.90565 0.78352 1.90836 1.48257 1.42348 1.58714 1.18673 1.16022 0.88499 0.96080 1.21012 0.94326 0.91217 0.98720 1.20869 1.09429 0.97435 0.93972 1.18324 0.89819 0.87116 0.90909 1.44360 1.37322 1.06990 1.44759 1.18491 0.78856 0.90198 0.78009 1.90657 1.42054 1.47756 1.63143 1.20914 1.16530 0.96292 1.23220 0.90706 1.25771 0.94107 0.98344 0.95474 1.69980 1.11841 1.32565 1.23890 0.86185 0.79000 0.81715 0.79214 1.18549 1.19862 1.19906 1.21316 1.03339 0.90235 1.01897 1.21043 0.93035 0.97624 0.92728 0.91770 0.91645 0.91276 0.90710 0.90273 0.86345 0.86665 0.88255 0.86568 0.85382 0.85518 0.76803 0.91541 0.83333 0.84965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.45 9.91 37.16 0.37 -0.08 16 2 C -0.14 -0.55 6.26 -26.73 -0.17 -0.72 16 3 C 0.10 0.52 6.06 -4.04 -0.02 0.49 16 4 N -0.29 -2.60 3.35 -58.27 -0.19 -2.80 16 5 N -0.08 -0.97 13.29 60.35 0.80 -0.17 16 6 N -0.07 -1.00 13.43 60.35 0.81 -0.19 16 7 N -0.28 -3.63 12.36 32.70 0.40 -3.22 16 8 C 0.18 1.86 7.77 -155.44 -1.21 0.65 16 9 C 0.15 1.37 5.61 36.00 0.20 1.57 16 10 O -0.35 -4.08 9.44 -40.62 -0.38 -4.46 16 11 C 0.52 7.22 7.89 34.49 0.27 7.49 16 12 O -0.51 -7.84 16.13 -19.27 -0.31 -8.15 16 13 C -0.19 -2.86 5.88 -104.94 -0.62 -3.48 16 14 C -0.03 -0.47 9.60 -39.21 -0.38 -0.85 16 15 C -0.20 -2.96 9.94 -39.43 -0.39 -3.36 16 16 C 0.24 4.50 6.27 -83.80 -0.53 3.98 16 17 N -0.69 -14.04 5.30 -11.18 -0.06 -14.10 16 18 C 0.54 13.77 7.46 -13.06 -0.10 13.67 16 19 O -0.55 -16.14 12.69 5.17 0.07 -16.07 16 20 C -0.53 -13.62 9.54 -35.68 -0.34 -13.96 16 21 H 0.07 1.72 7.85 -52.49 -0.41 1.31 16 22 C 0.08 2.16 5.50 -17.35 -0.10 2.07 16 23 N -0.76 -20.78 11.82 55.55 0.66 -20.12 16 24 Si 0.91 18.46 29.56 -169.99 -5.02 13.43 16 25 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 26 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 27 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 28 C -0.15 -2.84 8.62 -39.42 -0.34 -3.18 16 29 C -0.03 -0.42 9.58 -39.21 -0.38 -0.79 16 30 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 32 H 0.07 0.20 8.14 -51.92 -0.42 -0.23 16 33 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.12 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.12 0.45 7.75 -51.93 -0.40 0.05 16 37 H 0.10 0.65 7.81 -51.93 -0.41 0.24 16 38 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.13 1.50 7.60 -52.49 -0.40 1.10 16 40 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 41 H 0.40 6.74 8.79 -40.82 -0.36 6.38 16 42 H 0.27 6.80 8.29 -40.82 -0.34 6.46 16 43 H 0.15 3.29 6.41 -52.49 -0.34 2.96 16 44 H 0.13 2.07 7.64 -52.49 -0.40 1.67 16 LS Contribution 391.78 15.07 5.90 5.90 Total: -1.00 -33.90 391.78 -6.28 -40.18 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -5.23 Total: 6.26 kcal Atomic # 6 Polarization: 7.22 SS G_CDS: -3.72 Total: 3.51 kcal Atomic # 7 Polarization: -43.02 SS G_CDS: 2.42 Total: -40.60 kcal Atomic # 8 Polarization: -28.05 SS G_CDS: -0.63 Total: -28.68 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.02 Total: 13.43 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.90 -6.28 -40.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000018347832.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.344 kcal (2) G-P(sol) polarization free energy of solvation -33.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds