Wall clock time and date at job start Tue Mar 31 2020 05:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47115 * 2 1 4 4 N 1.46500 * 109.47311 * 179.97438 * 3 2 1 5 5 N 1.29024 * 126.43906 * 269.97872 * 4 3 2 6 6 N 1.28739 * 108.80632 * 180.02562 * 5 4 3 7 7 N 1.28840 * 109.39604 * 359.76345 * 6 5 4 8 8 C 1.31070 * 107.99292 * 0.37590 * 7 6 5 9 9 C 1.50697 * 126.65923 * 179.89719 * 8 7 6 10 10 O 1.45201 * 109.47180 * 269.68620 * 9 8 7 11 11 C 1.34748 * 117.00368 * 179.97438 * 10 9 8 12 12 O 1.21507 * 119.99755 * 0.02562 * 11 10 9 13 13 C 1.47468 * 120.00281 * 179.97438 * 11 10 9 14 14 C 1.39836 * 120.06237 * 359.73106 * 13 11 10 15 15 C 1.37615 * 119.92712 * 179.76294 * 14 13 11 16 16 C 1.39270 * 120.06478 * 0.51022 * 15 14 13 17 17 N 1.39077 * 119.93002 * 179.72055 * 16 15 14 18 18 C 1.34778 * 119.99807 * 213.66540 * 17 16 15 19 19 O 1.21722 * 120.00406 * 5.28288 * 18 17 16 20 20 C 1.46202 * 119.99669 * 185.27565 * 18 17 16 21 21 H 1.08000 * 120.00099 * 0.02562 * 20 18 17 22 22 C 1.40123 * 119.99759 * 179.97438 * 20 18 17 23 23 N 1.30639 * 119.99956 * 0.02562 * 22 20 18 24 24 Si 1.86797 * 119.99870 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47343 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47218 * 120.00593 * 24 22 20 27 27 H 1.48508 * 109.47020 * 240.00158 * 24 22 20 28 28 C 1.39275 * 120.14042 * 359.74493 * 16 15 14 29 29 C 1.37612 * 120.06298 * 359.97438 * 28 16 15 30 30 H 1.09001 * 109.47206 * 300.00171 * 1 2 3 31 31 H 1.08994 * 109.46945 * 60.00537 * 1 2 3 32 32 H 1.09008 * 109.46945 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47564 * 239.99788 * 2 1 3 34 34 H 1.09002 * 109.46867 * 119.99801 * 2 1 3 35 35 H 1.09001 * 109.47223 * 59.99840 * 3 2 1 36 36 H 1.09002 * 109.46951 * 300.00202 * 3 2 1 37 37 H 1.09000 * 109.47039 * 149.69106 * 9 8 7 38 38 H 1.09000 * 109.47538 * 29.68810 * 9 8 7 39 39 H 1.07995 * 120.04187 * 0.02562 * 14 13 11 40 40 H 1.07993 * 119.96832 * 180.23418 * 15 14 13 41 41 H 0.96999 * 120.00024 * 33.66435 * 17 16 15 42 42 H 0.97001 * 119.99733 * 180.02562 * 23 22 20 43 43 H 1.07996 * 119.96679 * 179.97438 * 28 16 15 44 44 H 1.07995 * 120.02999 * 179.97438 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 7 4.2710 1.4431 1.0389 6 7 5.4980 1.4435 0.6495 7 7 5.5382 1.4382 -0.6383 8 6 4.3049 1.4424 -1.0819 9 6 3.8673 1.4410 -2.5239 10 8 3.7255 2.8095 -2.9881 11 6 3.3380 2.9849 -4.2667 12 8 3.1240 2.0206 -4.9743 13 6 3.1726 4.3471 -4.8068 14 6 3.4121 5.4577 -3.9917 15 6 3.2616 6.7277 -4.5001 16 6 2.8609 6.9072 -5.8218 17 7 2.7041 8.1918 -6.3309 18 6 1.7494 8.4409 -7.2491 19 8 0.9628 7.5662 -7.5619 20 6 1.6586 9.7617 -7.8694 21 1 2.3567 10.5377 -7.5921 22 6 0.6664 10.0204 -8.8244 23 7 -0.1777 9.0816 -9.1602 24 14 0.5508 11.7078 -9.6174 25 1 1.6144 12.5867 -9.0684 26 1 0.7248 11.5774 -11.0864 27 1 -0.7795 12.3009 -9.3273 28 6 2.6165 5.8029 -6.6345 29 6 2.7709 4.5306 -6.1336 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6766 1.9563 -0.8900 37 1 2.9107 0.9263 -2.6128 38 1 4.6139 0.9274 -3.1297 39 1 3.7189 5.3192 -2.9656 40 1 3.4500 7.5859 -3.8722 41 1 3.2817 8.9086 -6.0252 42 1 -0.8643 9.2607 -9.8216 43 1 2.3056 5.9454 -7.6589 44 1 2.5808 3.6747 -6.7642 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000018347832.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:33 Heat of formation + Delta-G solvation = -3.702674 kcal Electronic energy + Delta-G solvation = -30276.607663 eV Core-core repulsion = 25810.000744 eV Total energy + Delta-G solvation = -4466.606918 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 359.143 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -45.44067 -41.76434 -40.75705 -38.78852 -37.90025 -37.56788 -35.43766 -34.59259 -34.53181 -34.02840 -32.01216 -31.28617 -29.49010 -28.48119 -28.09272 -25.16508 -24.77650 -24.00716 -23.51888 -22.52311 -22.42925 -21.57184 -19.60881 -19.14879 -18.92399 -18.31407 -17.97388 -17.88555 -17.58008 -17.53917 -16.46386 -16.26477 -16.14110 -15.71460 -15.40591 -14.99542 -14.84106 -14.73032 -14.66079 -14.33470 -14.26106 -14.07281 -13.73607 -13.53857 -13.49473 -13.21731 -13.13019 -13.09956 -12.83146 -12.74282 -12.67736 -12.41639 -12.19079 -12.03944 -11.99938 -11.94920 -11.81786 -11.76992 -11.35670 -11.19079 -10.92761 -10.12943 -9.85344 -8.96087 -8.40219 -6.97674 -0.30300 -0.17773 0.44763 0.70960 0.88406 1.35621 1.41242 1.46656 1.58618 1.61347 2.19393 2.34548 2.65323 2.77567 2.87292 2.99127 3.51994 3.53181 3.59319 3.65695 3.87338 3.95502 3.99500 4.05444 4.09457 4.13086 4.25926 4.35428 4.36703 4.45812 4.60893 4.65109 4.70065 4.92263 4.99760 5.02754 5.04505 5.08435 5.21375 5.24564 5.36006 5.36350 5.38962 5.67189 5.76867 6.12126 6.23706 6.57027 6.75714 7.24405 7.32676 8.28596 8.52936 Molecular weight = 359.14amu Principal moments of inertia in cm(-1) A = 0.018332 B = 0.001745 C = 0.001705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.009874 B =16041.622435 C =16414.309970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.135 4.135 3 C 0.094 3.906 4 N -0.277 5.277 5 N -0.089 5.089 6 N -0.104 5.104 7 N -0.305 5.305 8 C 0.183 3.817 9 C 0.151 3.849 10 O -0.348 6.348 11 C 0.536 3.464 12 O -0.526 6.526 13 C -0.183 4.183 14 C -0.020 4.020 15 C -0.178 4.178 16 C 0.210 3.790 17 N -0.688 5.688 18 C 0.527 3.473 19 O -0.601 6.601 20 C -0.560 4.560 21 H 0.096 0.904 22 C 0.030 3.970 23 N -0.810 5.810 24 Si 0.999 3.001 25 H -0.245 1.245 26 H -0.270 1.270 27 H -0.269 1.269 28 C -0.169 4.169 29 C -0.028 4.028 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.134 0.866 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.123 0.877 39 H 0.163 0.837 40 H 0.158 0.842 41 H 0.413 0.587 42 H 0.278 0.722 43 H 0.108 0.892 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.785 -12.878 17.007 21.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.174 4.174 3 C -0.025 4.025 4 N -0.081 5.081 5 N -0.075 5.075 6 N -0.097 5.097 7 N -0.156 5.156 8 C -0.095 4.095 9 C 0.074 3.926 10 O -0.263 6.263 11 C 0.383 3.617 12 O -0.417 6.417 13 C -0.185 4.185 14 C -0.039 4.039 15 C -0.199 4.199 16 C 0.110 3.890 17 N -0.331 5.331 18 C 0.334 3.666 19 O -0.487 6.487 20 C -0.596 4.596 21 H 0.114 0.886 22 C -0.187 4.187 23 N -0.439 5.439 24 Si 0.819 3.181 25 H -0.168 1.168 26 H -0.195 1.195 27 H -0.194 1.194 28 C -0.190 4.190 29 C -0.047 4.047 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.152 0.848 36 H 0.150 0.850 37 H 0.148 0.852 38 H 0.141 0.859 39 H 0.181 0.819 40 H 0.176 0.824 41 H 0.250 0.750 42 H 0.089 0.911 43 H 0.126 0.874 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.981 -13.754 17.448 22.416 hybrid contribution -0.663 0.749 -1.093 1.482 sum 2.317 -13.005 16.355 21.023 Atomic orbital electron populations 1.21697 0.92027 1.03528 1.03395 1.21920 0.98613 0.93052 1.03840 1.23023 0.68664 1.01858 1.08975 1.48959 1.11847 1.44235 1.03072 1.78839 0.97803 1.17470 1.13402 1.78673 1.10596 1.16558 1.03878 1.74984 1.19067 1.17826 1.03744 1.25481 0.86490 1.03755 0.93743 1.21234 1.05657 0.81973 0.83701 1.86547 1.79756 1.30742 1.29285 1.20878 0.72335 0.89586 0.78883 1.90846 1.48780 1.42667 1.59376 1.18827 1.14351 0.90053 0.95305 1.21358 0.92553 0.90062 0.99897 1.21140 1.07268 0.99183 0.92325 1.18544 0.91990 0.85952 0.92516 1.43817 1.36805 1.08307 1.44127 1.18763 0.79232 0.90044 0.78519 1.90619 1.44141 1.48982 1.64915 1.21457 1.17388 0.96941 1.23789 0.88615 1.26986 0.93179 1.02864 0.95674 1.70134 1.13072 1.35523 1.25143 0.84929 0.79449 0.75869 0.77884 1.16758 1.19488 1.19375 1.21056 1.05297 0.92068 1.00623 1.21006 0.93192 0.96541 0.93927 0.91170 0.91401 0.91158 0.90603 0.90974 0.84798 0.85012 0.85229 0.85924 0.81919 0.82426 0.75026 0.91143 0.87440 0.84688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.52 9.91 71.98 0.71 0.19 16 2 C -0.14 -0.72 6.26 30.59 0.19 -0.53 16 3 C 0.09 0.64 6.06 86.38 0.52 1.17 16 4 N -0.28 -4.31 3.35 -338.27 -1.13 -5.44 16 5 N -0.09 -1.91 13.29 37.02 0.49 -1.42 16 6 N -0.10 -2.72 13.43 37.01 0.50 -2.22 16 7 N -0.30 -7.57 12.36 -50.46 -0.62 -8.20 16 8 C 0.18 3.35 7.77 138.13 1.07 4.43 16 9 C 0.15 2.25 5.61 71.24 0.40 2.65 16 10 O -0.35 -6.81 9.44 -56.59 -0.53 -7.35 16 11 C 0.54 13.27 7.89 70.25 0.55 13.83 16 12 O -0.53 -14.90 16.13 19.81 0.32 -14.58 16 13 C -0.18 -5.12 5.88 -20.07 -0.12 -5.24 16 14 C -0.02 -0.49 9.60 22.51 0.22 -0.27 16 15 C -0.18 -4.96 9.94 22.37 0.22 -4.74 16 16 C 0.21 7.90 6.27 38.49 0.24 8.14 16 17 N -0.69 -28.31 5.30 -307.50 -1.63 -29.94 16 18 C 0.53 28.07 7.46 86.31 0.64 28.71 16 19 O -0.60 -37.04 12.69 -4.42 -0.06 -37.10 16 20 C -0.56 -29.08 9.54 24.80 0.24 -28.84 16 21 H 0.10 4.37 7.85 -2.91 -0.02 4.35 16 22 C 0.03 1.54 5.50 85.33 0.47 2.01 16 23 N -0.81 -46.35 11.82 21.85 0.26 -46.09 16 24 Si 1.00 37.86 29.56 68.60 2.03 39.89 16 25 H -0.24 -8.49 7.11 99.48 0.71 -7.79 16 26 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 27 H -0.27 -9.88 7.11 99.48 0.71 -9.17 16 28 C -0.17 -6.86 8.62 22.37 0.19 -6.66 16 29 C -0.03 -0.93 9.58 22.51 0.22 -0.71 16 30 H 0.07 0.17 8.14 -2.39 -0.02 0.15 16 31 H 0.07 0.23 8.14 -2.39 -0.02 0.21 16 32 H 0.07 0.26 8.14 -2.38 -0.02 0.24 16 33 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.13 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.13 0.53 7.75 -2.39 -0.02 0.51 16 37 H 0.13 1.19 7.81 -2.39 -0.02 1.17 16 38 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.16 2.96 7.60 -2.91 -0.02 2.94 16 40 H 0.16 3.41 8.06 -2.91 -0.02 3.39 16 41 H 0.41 13.83 8.79 -92.71 -0.81 13.02 16 42 H 0.28 14.39 8.29 -92.71 -0.77 13.62 16 43 H 0.11 5.23 6.41 -2.91 -0.02 5.21 16 44 H 0.14 4.35 7.64 -2.91 -0.02 4.33 16 Total: -1.00 -77.90 391.78 5.65 -72.25 By element: Atomic # 1 Polarization: 25.82 SS G_CDS: 0.25 Total: 26.07 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: 5.78 Total: 14.12 kcal Atomic # 7 Polarization: -91.17 SS G_CDS: -2.14 Total: -93.31 kcal Atomic # 8 Polarization: -58.76 SS G_CDS: -0.27 Total: -59.03 kcal Atomic # 14 Polarization: 37.86 SS G_CDS: 2.03 Total: 39.89 kcal Total: -77.90 5.65 -72.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000018347832.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.551 kcal (2) G-P(sol) polarization free energy of solvation -77.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds