Wall clock time and date at job start Tue Mar 31 2020 05:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.50429 * 109.47300 * 324.51126 * 3 2 1 5 5 C 1.50015 * 104.44668 * 175.48294 * 4 3 2 6 6 C 1.52210 * 109.97755 * 279.26593 * 5 4 3 7 7 N 1.47934 * 108.40256 * 155.81083 * 6 5 4 8 8 C 1.36962 * 120.63230 * 118.50846 * 7 6 5 9 9 H 1.08003 * 120.00290 * 210.09003 * 8 7 6 10 10 C 1.38811 * 119.99698 * 30.08564 * 8 7 6 11 11 N 1.31615 * 120.00023 * 18.02636 * 10 8 7 12 12 Si 1.86801 * 119.99964 * 198.02560 * 10 8 7 13 13 H 1.48500 * 109.47342 * 359.97438 * 12 10 8 14 14 H 1.48505 * 109.47275 * 120.00083 * 12 10 8 15 15 H 1.48504 * 109.47311 * 240.00353 * 12 10 8 16 16 C 1.47495 * 117.56604 * 298.11462 * 7 6 5 17 17 C 1.52493 * 110.91673 * 92.82728 * 16 7 6 18 18 N 1.49631 * 108.34580 * 233.26203 * 17 16 7 19 19 C 1.50297 * 104.46052 * 258.28330 * 18 17 16 20 20 C 1.47198 * 109.47187 * 79.23493 * 19 18 17 21 21 N 6.83858 * 138.67339 * 139.64548 * 2 1 3 22 22 C 1.50675 * 105.99987 * 149.35347 * 18 17 16 23 23 C 1.50616 * 108.06916 * 230.01926 * 22 18 17 24 24 N 1.48742 * 117.80704 * 125.40541 * 23 22 18 25 25 C 1.49701 * 109.27372 * 343.50041 * 24 23 22 26 26 C 1.47199 * 109.47394 * 77.08120 * 25 24 23 27 27 N 7.65002 * 141.48669 * 255.10286 * 2 1 3 28 28 C 1.49943 * 104.31085 * 228.15374 * 24 23 22 29 29 C 1.48543 * 118.73532 * 110.47432 * 28 24 23 30 30 H 1.09002 * 109.47324 * 204.50758 * 3 2 1 31 31 H 1.09003 * 109.47413 * 84.51163 * 3 2 1 32 32 H 1.08757 * 107.57950 * 160.80006 * 5 4 3 33 33 H 1.08761 * 107.40931 * 40.16700 * 5 4 3 34 34 H 1.09612 * 109.30693 * 273.17854 * 6 5 4 35 35 H 1.08283 * 111.50434 * 34.32483 * 6 5 4 36 36 H 0.97010 * 120.00377 * 179.97438 * 11 10 8 37 37 H 1.09505 * 109.59493 * 331.62998 * 16 7 6 38 38 H 1.09631 * 109.65665 * 213.61824 * 16 7 6 39 39 H 1.08655 * 110.96061 * 116.64754 * 17 16 7 40 40 H 1.08269 * 110.46084 * 352.97990 * 17 16 7 41 41 H 1.08999 * 109.46785 * 199.23946 * 19 18 17 42 42 H 1.09002 * 109.46561 * 319.23389 * 19 18 17 43 43 H 1.11415 * 103.93797 * 114.82344 * 22 18 17 44 44 H 1.06074 * 108.78835 * 2.17529 * 22 18 17 45 45 H 1.09371 * 109.67205 * 1.02486 * 23 22 18 46 46 H 1.10691 * 108.40457 * 245.97302 * 23 22 18 47 47 H 1.09008 * 109.46929 * 197.07984 * 25 24 23 48 48 H 1.09001 * 109.47692 * 317.07656 * 25 24 23 49 49 H 1.08114 * 107.88033 * 334.69075 * 28 24 23 50 50 H 1.12533 * 102.46878 * 227.31248 * 28 24 23 51 51 H 1.12794 * 107.04058 * 149.78482 * 29 28 24 52 52 H 1.08161 * 116.57085 * 36.87883 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.1100 -1.1539 0.8234 5 6 4.6001 -1.1139 0.6548 6 6 4.9917 -1.7632 -0.6650 7 7 6.3019 -1.2181 -1.0830 8 6 7.3870 -2.0415 -1.2254 9 1 8.3817 -1.6598 -1.0482 10 6 7.2084 -3.3669 -1.5976 11 7 6.0768 -3.7481 -2.1511 12 14 8.5740 -4.6092 -1.3127 13 1 9.7351 -3.9324 -0.6811 14 1 8.0829 -5.6883 -0.4184 15 1 8.9899 -5.1945 -2.6126 16 6 6.3861 0.2310 -1.3451 17 6 6.8257 0.9857 -0.0951 18 7 5.8313 2.0710 0.1738 19 6 6.4959 3.3219 -0.3288 20 6 6.3683 3.3907 -1.7937 21 7 6.2715 3.4413 -2.9241 22 6 5.8150 2.2583 1.6688 23 6 4.3809 2.2275 2.1278 24 7 4.0140 1.2561 3.1928 25 6 5.0907 0.2228 3.3115 26 6 6.2367 0.7899 4.0407 27 7 7.1218 1.2247 4.6035 28 6 2.7796 0.5832 2.6714 29 6 2.8620 -0.8425 2.2625 30 1 2.9709 0.9359 0.4263 31 1 2.9714 -0.0975 -1.0230 32 1 5.0384 -1.6832 1.4712 33 1 4.9025 -0.0694 0.6801 34 1 5.1078 -2.8430 -0.5172 35 1 4.2494 -1.5820 -1.4322 36 1 5.9520 -4.6743 -2.4115 37 1 5.4100 0.6019 -1.6748 38 1 7.1038 0.4186 -2.1524 39 1 7.7826 1.4755 -0.2531 40 1 6.8656 0.3176 0.7560 41 1 6.0172 4.1927 0.1190 42 1 7.5512 3.3071 -0.0563 43 1 6.2117 3.2893 1.8144 44 1 6.5296 1.6054 2.1027 45 1 3.7232 2.0602 1.2701 46 1 4.1173 3.2291 2.5185 47 1 4.7068 -0.6415 3.8535 48 1 5.4101 -0.0853 2.3159 49 1 2.2988 1.2612 1.9800 50 1 2.0893 0.6201 3.5594 51 1 1.8469 -1.2984 2.4470 52 1 3.4996 -1.4808 2.8590 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019365543.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:12 Heat of formation + Delta-G solvation = 210.990091 kcal Electronic energy + Delta-G solvation = -35219.882631 eV Core-core repulsion = 31066.544430 eV Total energy + Delta-G solvation = -4153.338201 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 359.213 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -40.29411 -38.23064 -37.30450 -36.20501 -36.07722 -35.86556 -34.55444 -31.73781 -31.16760 -29.85628 -29.04610 -28.53741 -27.59500 -26.18074 -25.02135 -23.19654 -21.96788 -21.42814 -20.70248 -20.32095 -18.09425 -17.84343 -17.28787 -17.16061 -16.40407 -15.97360 -15.88629 -15.55956 -15.08067 -14.84426 -14.71254 -14.41254 -14.33560 -14.00562 -13.64706 -13.50933 -13.40416 -13.19847 -13.11666 -12.85464 -12.74675 -12.63757 -12.58982 -12.54520 -12.42119 -12.23759 -11.99946 -11.90404 -11.69887 -11.51667 -11.46528 -11.31282 -11.06496 -10.99811 -10.88031 -10.80737 -10.65805 -10.36574 -10.12539 -9.85754 -9.78953 -9.33927 -9.08314 -8.70442 -8.53388 -6.82523 -5.91694 -3.38464 2.48365 2.60482 2.67577 2.71762 2.82025 2.85160 3.29774 3.39457 3.40180 3.55273 3.75294 3.94158 4.01269 4.09391 4.16464 4.38959 4.40773 4.47168 4.67245 4.69283 4.74837 4.87514 4.94141 4.98289 5.01508 5.12314 5.19804 5.27153 5.31594 5.40640 5.51877 5.54197 5.57005 5.62768 5.71913 5.82661 5.87540 5.91416 5.99415 6.11906 6.14834 6.27245 6.29997 6.45909 6.58026 6.64758 6.75720 6.85452 7.17692 7.42710 7.59378 7.62170 7.62448 7.69942 8.32538 9.05187 9.68392 10.27126 11.15543 Molecular weight = 359.21amu Principal moments of inertia in cm(-1) A = 0.007065 B = 0.004630 C = 0.004242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3962.392621 B = 6045.790902 C = 6599.846983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C 0.220 3.780 3 C 0.095 3.905 4 N -0.448 5.448 5 C -0.018 4.018 6 C 0.162 3.838 7 N -0.585 5.585 8 C -0.259 4.259 9 H 0.064 0.936 10 C 0.012 3.988 11 N -0.890 5.890 12 Si 0.897 3.103 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.290 1.290 16 C 0.147 3.853 17 C -0.011 4.011 18 N -0.464 5.464 19 C 0.105 3.895 20 C 0.212 3.788 21 N -0.420 5.420 22 C -0.008 4.008 23 C 0.015 3.985 24 N -0.454 5.454 25 C 0.084 3.916 26 C 0.218 3.782 27 N -0.430 5.430 28 C -0.006 4.006 29 C -0.017 4.017 30 H 0.098 0.902 31 H 0.126 0.874 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.097 0.903 35 H 0.032 0.968 36 H 0.255 0.745 37 H 0.050 0.950 38 H 0.041 0.959 39 H 0.049 0.951 40 H 0.083 0.917 41 H 0.115 0.885 42 H 0.093 0.907 43 H 0.066 0.934 44 H 0.084 0.916 45 H 0.082 0.918 46 H 0.081 0.919 47 H 0.122 0.878 48 H 0.115 0.885 49 H 0.089 0.911 50 H 0.080 0.920 51 H 0.075 0.925 52 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.392 11.629 10.952 16.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.117 5.117 2 C -0.098 4.098 3 C -0.035 4.035 4 N -0.172 5.172 5 C -0.147 4.147 6 C 0.036 3.964 7 N -0.307 5.307 8 C -0.388 4.388 9 H 0.082 0.918 10 C -0.188 4.188 11 N -0.533 5.533 12 Si 0.727 3.273 13 H -0.202 1.202 14 H -0.214 1.214 15 H -0.217 1.217 16 C 0.020 3.980 17 C -0.141 4.141 18 N -0.189 5.189 19 C -0.026 4.026 20 C -0.107 4.107 21 N -0.098 5.098 22 C -0.137 4.137 23 C -0.113 4.113 24 N -0.178 5.178 25 C -0.046 4.046 26 C -0.100 4.100 27 N -0.108 5.108 28 C -0.135 4.135 29 C -0.146 4.146 30 H 0.115 0.885 31 H 0.143 0.857 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.115 0.885 35 H 0.050 0.950 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.067 0.933 40 H 0.102 0.898 41 H 0.133 0.867 42 H 0.110 0.890 43 H 0.084 0.916 44 H 0.102 0.898 45 H 0.100 0.900 46 H 0.100 0.900 47 H 0.139 0.861 48 H 0.132 0.868 49 H 0.107 0.893 50 H 0.098 0.902 51 H 0.094 0.906 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.953 11.743 10.138 16.285 hybrid contribution 2.197 -0.378 0.165 2.235 sum -2.756 11.365 10.303 15.586 Atomic orbital electron populations 1.81170 1.12974 1.08630 1.08932 1.29056 0.95039 0.92803 0.92883 1.21099 0.81936 0.96823 1.03654 1.69682 1.12747 1.32291 1.02460 1.24415 0.85577 1.01203 1.03465 1.20880 0.85890 1.00391 0.89191 1.44468 1.07953 1.01005 1.77322 1.19051 0.86912 0.91444 1.41384 0.91779 1.25073 0.96965 0.99029 0.97763 1.70020 1.25287 1.16760 1.41231 0.86324 0.81723 0.81639 0.77640 1.20233 1.21390 1.21704 1.20898 0.99340 0.85755 0.92055 1.24465 0.92757 0.93765 1.03117 1.70235 1.38629 1.01910 1.08159 1.21187 1.00947 0.97085 0.83384 1.28743 0.93499 0.93710 0.94786 1.81217 1.08178 1.07571 1.12800 1.23340 0.96881 1.03522 0.89919 1.23030 0.95154 0.98453 0.94665 1.68932 1.02375 1.10181 1.36335 1.21202 0.87024 0.95570 1.00797 1.28779 0.94197 0.93663 0.93326 1.81200 1.11564 1.08208 1.09827 1.23067 0.92974 0.94743 1.02728 1.22823 1.05778 0.93920 0.92106 0.88471 0.85674 0.91025 0.91360 0.88486 0.94959 0.93439 0.93127 0.94091 0.93271 0.89849 0.86725 0.88959 0.91565 0.89764 0.89978 0.90046 0.86050 0.86808 0.89304 0.90207 0.90640 0.88436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.46 18.54 42.15 0.78 -5.68 16 2 C 0.22 2.74 14.55 -20.76 -0.30 2.44 16 3 C 0.10 1.02 4.44 -4.63 -0.02 1.00 16 4 N -0.45 -5.15 5.82 -232.02 -1.35 -6.50 16 5 C -0.02 -0.23 2.93 -2.48 -0.01 -0.24 16 6 C 0.16 3.06 5.11 -3.66 -0.02 3.04 16 7 N -0.59 -11.87 2.64 -171.59 -0.45 -12.32 16 8 C -0.26 -6.15 9.74 -15.05 -0.15 -6.30 16 9 H 0.06 1.53 7.89 -52.48 -0.41 1.12 16 10 C 0.01 0.30 4.87 -17.43 -0.08 0.21 16 11 N -0.89 -23.53 11.26 55.49 0.63 -22.90 16 12 Si 0.90 20.01 29.59 -169.99 -5.03 14.98 16 13 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 14 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 15 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 16 C 0.15 2.45 4.91 -3.76 -0.02 2.44 16 17 C -0.01 -0.13 4.13 -2.56 -0.01 -0.14 16 18 N -0.46 -4.08 4.40 -231.69 -1.02 -5.10 16 19 C 0.10 0.76 4.46 -4.70 -0.02 0.74 16 20 C 0.21 2.39 14.73 -20.77 -0.31 2.09 16 21 N -0.42 -6.21 18.54 42.14 0.78 -5.43 16 22 C -0.01 -0.06 3.80 -2.89 -0.01 -0.07 16 23 C 0.02 0.10 5.16 -4.00 -0.02 0.08 16 24 N -0.45 -3.34 5.84 -233.25 -1.36 -4.70 16 25 C 0.08 0.68 3.69 -5.05 -0.02 0.66 16 26 C 0.22 2.27 12.83 -20.78 -0.27 2.00 16 27 N -0.43 -5.52 18.53 42.13 0.78 -4.74 16 28 C -0.01 -0.04 4.59 -4.30 -0.02 -0.06 16 29 C -0.02 -0.14 3.85 -4.65 -0.02 -0.16 16 30 H 0.10 0.85 3.37 -51.93 -0.17 0.68 16 31 H 0.13 1.51 6.73 -51.93 -0.35 1.16 16 32 H 0.07 0.93 6.54 -52.07 -0.34 0.59 16 33 H 0.07 0.77 1.85 -52.06 -0.10 0.68 16 34 H 0.10 2.22 5.81 -51.58 -0.30 1.92 16 35 H 0.03 0.66 6.81 -52.33 -0.36 0.30 16 36 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 37 H 0.05 0.84 7.73 -51.64 -0.40 0.44 16 38 H 0.04 0.78 8.17 -51.57 -0.42 0.36 16 39 H 0.05 0.57 6.58 -52.12 -0.34 0.22 16 40 H 0.08 1.09 5.20 -52.34 -0.27 0.81 16 41 H 0.11 0.49 7.50 -51.93 -0.39 0.10 16 42 H 0.09 0.55 7.11 -51.93 -0.37 0.18 16 43 H 0.07 0.38 6.65 -50.53 -0.34 0.04 16 44 H 0.08 0.75 3.49 -53.53 -0.19 0.56 16 45 H 0.08 0.58 3.95 -51.72 -0.20 0.37 16 46 H 0.08 0.50 8.28 -50.96 -0.42 0.08 16 47 H 0.12 0.79 6.45 -51.92 -0.33 0.45 16 48 H 0.11 1.03 1.96 -51.93 -0.10 0.93 16 49 H 0.09 0.63 4.80 -52.42 -0.25 0.38 16 50 H 0.08 0.53 8.40 -49.86 -0.42 0.11 16 51 H 0.08 0.68 8.43 -49.70 -0.42 0.26 16 52 H 0.10 0.75 5.54 -52.40 -0.29 0.46 16 LS Contribution 387.80 15.07 5.84 5.84 Total: -1.00 -30.30 387.80 -8.02 -38.31 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -6.33 Total: 0.50 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: -1.29 Total: 7.73 kcal Atomic # 7 Polarization: -66.16 SS G_CDS: -1.21 Total: -67.37 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.03 Total: 14.98 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.30 -8.02 -38.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019365543.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 249.303 kcal (2) G-P(sol) polarization free energy of solvation -30.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 219.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 210.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds