Wall clock time and date at job start Tue Mar 31 2020 05:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.50429 * 109.47300 * 324.51126 * 3 2 1 5 5 C 1.50015 * 104.44668 * 175.48294 * 4 3 2 6 6 C 1.52210 * 109.97755 * 279.26593 * 5 4 3 7 7 N 1.47934 * 108.40256 * 155.81083 * 6 5 4 8 8 C 1.36962 * 120.63230 * 118.50846 * 7 6 5 9 9 H 1.08003 * 120.00290 * 210.09003 * 8 7 6 10 10 C 1.38811 * 119.99698 * 30.08564 * 8 7 6 11 11 N 1.31615 * 120.00023 * 18.02636 * 10 8 7 12 12 Si 1.86801 * 119.99964 * 198.02560 * 10 8 7 13 13 H 1.48500 * 109.47342 * 359.97438 * 12 10 8 14 14 H 1.48505 * 109.47275 * 120.00083 * 12 10 8 15 15 H 1.48504 * 109.47311 * 240.00353 * 12 10 8 16 16 C 1.47495 * 117.56604 * 298.11462 * 7 6 5 17 17 C 1.52493 * 110.91673 * 92.82728 * 16 7 6 18 18 N 1.49631 * 108.34580 * 233.26203 * 17 16 7 19 19 C 1.50297 * 104.46052 * 258.28330 * 18 17 16 20 20 C 1.47198 * 109.47187 * 79.23493 * 19 18 17 21 21 N 6.83858 * 138.67339 * 139.64548 * 2 1 3 22 22 C 1.50675 * 105.99987 * 149.35347 * 18 17 16 23 23 C 1.50616 * 108.06916 * 230.01926 * 22 18 17 24 24 N 1.48742 * 117.80704 * 125.40541 * 23 22 18 25 25 C 1.49701 * 109.27372 * 343.50041 * 24 23 22 26 26 C 1.47199 * 109.47394 * 77.08120 * 25 24 23 27 27 N 7.65002 * 141.48669 * 255.10286 * 2 1 3 28 28 C 1.49943 * 104.31085 * 228.15374 * 24 23 22 29 29 C 1.48543 * 118.73532 * 110.47432 * 28 24 23 30 30 H 1.09002 * 109.47324 * 204.50758 * 3 2 1 31 31 H 1.09003 * 109.47413 * 84.51163 * 3 2 1 32 32 H 1.08757 * 107.57950 * 160.80006 * 5 4 3 33 33 H 1.08761 * 107.40931 * 40.16700 * 5 4 3 34 34 H 1.09612 * 109.30693 * 273.17854 * 6 5 4 35 35 H 1.08283 * 111.50434 * 34.32483 * 6 5 4 36 36 H 0.97010 * 120.00377 * 179.97438 * 11 10 8 37 37 H 1.09505 * 109.59493 * 331.62998 * 16 7 6 38 38 H 1.09631 * 109.65665 * 213.61824 * 16 7 6 39 39 H 1.08655 * 110.96061 * 116.64754 * 17 16 7 40 40 H 1.08269 * 110.46084 * 352.97990 * 17 16 7 41 41 H 1.08999 * 109.46785 * 199.23946 * 19 18 17 42 42 H 1.09002 * 109.46561 * 319.23389 * 19 18 17 43 43 H 1.11415 * 103.93797 * 114.82344 * 22 18 17 44 44 H 1.06074 * 108.78835 * 2.17529 * 22 18 17 45 45 H 1.09371 * 109.67205 * 1.02486 * 23 22 18 46 46 H 1.10691 * 108.40457 * 245.97302 * 23 22 18 47 47 H 1.09008 * 109.46929 * 197.07984 * 25 24 23 48 48 H 1.09001 * 109.47692 * 317.07656 * 25 24 23 49 49 H 1.08114 * 107.88033 * 334.69075 * 28 24 23 50 50 H 1.12533 * 102.46878 * 227.31248 * 28 24 23 51 51 H 1.12794 * 107.04058 * 149.78482 * 29 28 24 52 52 H 1.08161 * 116.57085 * 36.87883 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.1100 -1.1539 0.8234 5 6 4.6001 -1.1139 0.6548 6 6 4.9917 -1.7632 -0.6650 7 7 6.3019 -1.2181 -1.0830 8 6 7.3870 -2.0415 -1.2254 9 1 8.3817 -1.6598 -1.0482 10 6 7.2084 -3.3669 -1.5976 11 7 6.0768 -3.7481 -2.1511 12 14 8.5740 -4.6092 -1.3127 13 1 9.7351 -3.9324 -0.6811 14 1 8.0829 -5.6883 -0.4184 15 1 8.9899 -5.1945 -2.6126 16 6 6.3861 0.2310 -1.3451 17 6 6.8257 0.9857 -0.0951 18 7 5.8313 2.0710 0.1738 19 6 6.4959 3.3219 -0.3288 20 6 6.3683 3.3907 -1.7937 21 7 6.2715 3.4413 -2.9241 22 6 5.8150 2.2583 1.6688 23 6 4.3809 2.2275 2.1278 24 7 4.0140 1.2561 3.1928 25 6 5.0907 0.2228 3.3115 26 6 6.2367 0.7899 4.0407 27 7 7.1218 1.2247 4.6035 28 6 2.7796 0.5832 2.6714 29 6 2.8620 -0.8425 2.2625 30 1 2.9709 0.9359 0.4263 31 1 2.9714 -0.0975 -1.0230 32 1 5.0384 -1.6832 1.4712 33 1 4.9025 -0.0694 0.6801 34 1 5.1078 -2.8430 -0.5172 35 1 4.2494 -1.5820 -1.4322 36 1 5.9520 -4.6743 -2.4115 37 1 5.4100 0.6019 -1.6748 38 1 7.1038 0.4186 -2.1524 39 1 7.7826 1.4755 -0.2531 40 1 6.8656 0.3176 0.7560 41 1 6.0172 4.1927 0.1190 42 1 7.5512 3.3071 -0.0563 43 1 6.2117 3.2893 1.8144 44 1 6.5296 1.6054 2.1027 45 1 3.7232 2.0602 1.2701 46 1 4.1173 3.2291 2.5185 47 1 4.7068 -0.6415 3.8535 48 1 5.4101 -0.0853 2.3159 49 1 2.2988 1.2612 1.9800 50 1 2.0893 0.6201 3.5594 51 1 1.8469 -1.2984 2.4470 52 1 3.4996 -1.4808 2.8590 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019365543.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:10 Heat of formation + Delta-G solvation = 185.687656 kcal Electronic energy + Delta-G solvation = -35220.979827 eV Core-core repulsion = 31066.544430 eV Total energy + Delta-G solvation = -4154.435397 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 359.213 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -41.07120 -39.06385 -38.25998 -37.43274 -37.01651 -36.83196 -35.67979 -33.39154 -32.01378 -30.69839 -30.08147 -29.36857 -28.73134 -27.10166 -26.34142 -24.30481 -22.95700 -22.11924 -21.80956 -21.47172 -19.02949 -18.65570 -18.53859 -18.11584 -17.35596 -16.98444 -16.71966 -16.49168 -16.22814 -15.83179 -15.75575 -15.43614 -15.30419 -15.17922 -14.78056 -14.44556 -14.23589 -14.14349 -14.11038 -13.95640 -13.85037 -13.62268 -13.55955 -13.48224 -13.38100 -13.26357 -13.02248 -12.87652 -12.76970 -12.70307 -12.48873 -12.32821 -12.23898 -12.15817 -12.11747 -11.88235 -11.85166 -11.75049 -11.31589 -11.20341 -11.05020 -10.40089 -10.06175 -9.80124 -9.48854 -8.55480 -7.78944 -5.25655 1.49532 1.54745 1.61641 1.70156 1.73009 1.77800 1.83617 1.88997 1.97152 2.55871 2.85501 2.95633 3.01868 3.23931 3.31757 3.40209 3.41384 3.78127 3.80902 3.82741 4.00998 4.04031 4.08495 4.22439 4.32438 4.36559 4.41604 4.46479 4.53226 4.54617 4.62462 4.67337 4.71714 4.79771 4.84278 4.89545 4.99434 5.01739 5.05903 5.13774 5.20965 5.33010 5.45024 5.57916 5.64003 5.66909 5.74097 5.75707 5.86815 5.93204 6.05963 6.50579 6.61555 6.66744 6.75263 7.24108 7.94294 8.48670 9.25398 Molecular weight = 359.21amu Principal moments of inertia in cm(-1) A = 0.007065 B = 0.004630 C = 0.004242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3962.392621 B = 6045.790902 C = 6599.846983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C 0.242 3.758 3 C 0.101 3.899 4 N -0.467 5.467 5 C 0.004 3.996 6 C 0.173 3.827 7 N -0.601 5.601 8 C -0.249 4.249 9 H 0.063 0.937 10 C -0.039 4.039 11 N -0.924 5.924 12 Si 0.949 3.051 13 H -0.267 1.267 14 H -0.290 1.290 15 H -0.303 1.303 16 C 0.155 3.845 17 C 0.002 3.998 18 N -0.467 5.467 19 C 0.102 3.898 20 C 0.236 3.764 21 N -0.491 5.491 22 C -0.008 4.008 23 C 0.011 3.989 24 N -0.448 5.448 25 C 0.085 3.915 26 C 0.241 3.759 27 N -0.474 5.474 28 C -0.006 4.006 29 C -0.012 4.012 30 H 0.125 0.875 31 H 0.110 0.890 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.055 0.945 35 H 0.008 0.992 36 H 0.247 0.753 37 H 0.049 0.951 38 H 0.009 0.991 39 H 0.061 0.939 40 H 0.080 0.920 41 H 0.159 0.841 42 H 0.117 0.883 43 H 0.095 0.905 44 H 0.074 0.926 45 H 0.082 0.918 46 H 0.101 0.899 47 H 0.141 0.859 48 H 0.106 0.894 49 H 0.094 0.906 50 H 0.095 0.905 51 H 0.075 0.925 52 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.420 13.948 13.822 19.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.155 5.155 2 C -0.075 4.075 3 C -0.029 4.029 4 N -0.191 5.191 5 C -0.124 4.124 6 C 0.048 3.952 7 N -0.324 5.324 8 C -0.379 4.379 9 H 0.081 0.919 10 C -0.236 4.236 11 N -0.570 5.570 12 Si 0.779 3.221 13 H -0.191 1.191 14 H -0.217 1.217 15 H -0.230 1.230 16 C 0.029 3.971 17 C -0.128 4.128 18 N -0.192 5.192 19 C -0.028 4.028 20 C -0.081 4.081 21 N -0.170 5.170 22 C -0.137 4.137 23 C -0.117 4.117 24 N -0.173 5.173 25 C -0.045 4.045 26 C -0.077 4.077 27 N -0.153 5.153 28 C -0.134 4.134 29 C -0.141 4.141 30 H 0.142 0.858 31 H 0.128 0.872 32 H 0.095 0.905 33 H 0.106 0.894 34 H 0.073 0.927 35 H 0.026 0.974 36 H 0.056 0.944 37 H 0.067 0.933 38 H 0.028 0.972 39 H 0.079 0.921 40 H 0.099 0.901 41 H 0.177 0.823 42 H 0.134 0.866 43 H 0.114 0.886 44 H 0.092 0.908 45 H 0.100 0.900 46 H 0.119 0.881 47 H 0.158 0.842 48 H 0.123 0.877 49 H 0.112 0.888 50 H 0.113 0.887 51 H 0.094 0.906 52 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.982 14.103 13.040 19.843 hybrid contribution 2.174 -1.024 -0.738 2.514 sum -2.808 13.080 12.302 18.174 Atomic orbital electron populations 1.81196 1.14091 1.09979 1.10200 1.29202 0.95049 0.91587 0.91702 1.21130 0.80868 0.97834 1.03058 1.69588 1.11289 1.33411 1.04813 1.23998 0.86941 1.01678 0.99794 1.20631 0.84767 0.98437 0.91402 1.44660 1.07571 1.02263 1.77941 1.19294 0.87905 0.91764 1.38955 0.91913 1.25629 0.98524 1.00644 0.98777 1.70164 1.26990 1.16290 1.43541 0.85492 0.80099 0.79841 0.76679 1.19118 1.21720 1.23050 1.20908 0.98445 0.84145 0.93624 1.24057 0.94074 0.94519 1.00198 1.70092 1.37586 1.01647 1.09860 1.21640 1.02877 0.97652 0.80659 1.29547 0.91393 0.91638 0.95555 1.81247 1.10648 1.09884 1.15197 1.23367 0.97223 1.05075 0.87997 1.23118 0.94677 0.99315 0.94619 1.69008 1.01942 1.09788 1.36525 1.21296 0.86669 0.96312 1.00197 1.29065 0.93788 0.92475 0.92333 1.81229 1.12896 1.09808 1.11380 1.23007 0.93197 0.93722 1.03516 1.22884 1.06067 0.95269 0.89867 0.85814 0.87187 0.90466 0.89352 0.92667 0.97389 0.94362 0.93309 0.97225 0.92112 0.90143 0.82336 0.86587 0.88640 0.90829 0.90027 0.88085 0.84160 0.87707 0.88832 0.88685 0.90649 0.87244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -13.54 18.54 20.01 0.37 -13.17 16 2 C 0.24 5.72 14.55 89.44 1.30 7.02 16 3 C 0.10 2.02 4.44 83.80 0.37 2.40 16 4 N -0.47 -10.11 5.82 -887.98 -5.16 -15.27 16 5 C 0.00 0.11 2.93 85.43 0.25 0.36 16 6 C 0.17 6.71 5.11 85.84 0.44 7.15 16 7 N -0.60 -24.83 2.64 -696.78 -1.84 -26.67 16 8 C -0.25 -12.04 9.74 84.03 0.82 -11.22 16 9 H 0.06 3.01 7.89 -2.91 -0.02 2.99 16 10 C -0.04 -2.02 4.87 84.86 0.41 -1.60 16 11 N -0.92 -51.07 11.26 21.65 0.24 -50.82 16 12 Si 0.95 42.11 29.59 68.60 2.03 44.14 16 13 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 14 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 15 H -0.30 -13.93 7.11 99.48 0.71 -13.23 16 16 C 0.16 5.16 4.91 86.02 0.42 5.59 16 17 C 0.00 0.04 4.13 85.60 0.35 0.39 16 18 N -0.47 -6.55 4.40 -886.94 -3.90 -10.45 16 19 C 0.10 1.03 4.46 83.83 0.37 1.41 16 20 C 0.24 4.89 14.73 89.44 1.32 6.21 16 21 N -0.49 -14.40 18.54 20.00 0.37 -14.03 16 22 C -0.01 -0.08 3.80 84.79 0.32 0.24 16 23 C 0.01 0.10 5.16 85.17 0.44 0.54 16 24 N -0.45 -4.64 5.84 -891.87 -5.20 -9.84 16 25 C 0.09 1.06 3.69 83.95 0.31 1.37 16 26 C 0.24 4.25 12.83 89.45 1.15 5.40 16 27 N -0.47 -11.02 18.53 20.00 0.37 -10.65 16 28 C -0.01 -0.06 4.59 84.30 0.39 0.33 16 29 C -0.01 -0.17 3.85 84.42 0.33 0.16 16 30 H 0.12 1.80 3.37 -2.39 -0.01 1.79 16 31 H 0.11 2.64 6.73 -2.39 -0.02 2.62 16 32 H 0.08 1.89 6.54 -2.52 -0.02 1.87 16 33 H 0.09 1.82 1.85 -2.51 0.00 1.82 16 34 H 0.05 2.64 5.81 -2.06 -0.01 2.62 16 35 H 0.01 0.34 6.81 -2.76 -0.02 0.32 16 36 H 0.25 13.49 8.31 -92.70 -0.77 12.72 16 37 H 0.05 1.62 7.73 -2.12 -0.02 1.60 16 38 H 0.01 0.36 8.17 -2.05 -0.02 0.35 16 39 H 0.06 1.23 6.58 -2.57 -0.02 1.21 16 40 H 0.08 1.89 5.20 -2.77 -0.01 1.88 16 41 H 0.16 0.36 7.50 -2.39 -0.02 0.35 16 42 H 0.12 0.79 7.11 -2.39 -0.02 0.77 16 43 H 0.10 0.50 6.65 -1.08 -0.01 0.49 16 44 H 0.07 1.00 3.49 -3.89 -0.01 0.98 16 45 H 0.08 0.76 3.95 -2.19 -0.01 0.75 16 46 H 0.10 0.64 8.28 -1.48 -0.01 0.63 16 47 H 0.14 1.27 6.45 -2.38 -0.02 1.25 16 48 H 0.11 1.56 1.96 -2.39 0.00 1.55 16 49 H 0.09 0.94 4.80 -2.85 -0.01 0.93 16 50 H 0.09 0.84 8.40 -0.45 0.00 0.83 16 51 H 0.08 1.15 8.43 -0.30 0.00 1.15 16 52 H 0.11 1.32 5.54 -2.83 -0.02 1.30 16 Total: -1.00 -71.48 387.80 -2.68 -74.16 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: 1.05 Total: 6.87 kcal Atomic # 6 Polarization: 16.75 SS G_CDS: 8.99 Total: 25.74 kcal Atomic # 7 Polarization: -136.16 SS G_CDS: -14.75 Total: -150.91 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -71.48 -2.68 -74.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019365543.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 259.849 kcal (2) G-P(sol) polarization free energy of solvation -71.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 188.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 185.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds