Wall clock time and date at job start Tue Mar 31 2020 04:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47122 * 2 1 4 4 H 1.08997 * 109.46572 * 304.99117 * 3 2 1 5 5 O 1.42891 * 109.47369 * 64.99468 * 3 2 1 6 6 C 1.35922 * 117.00225 * 267.16017 * 5 3 2 7 7 C 1.38708 * 120.05741 * 355.99078 * 6 5 3 8 8 C 1.38154 * 119.95328 * 179.97438 * 7 6 5 9 9 C 1.38268 * 120.08330 * 0.02562 * 8 7 6 10 10 C 1.38251 * 120.11776 * 359.97438 * 9 8 7 11 11 C 1.38254 * 120.03873 * 0.29830 * 10 9 8 12 12 Cl 1.73607 * 120.03749 * 179.72299 * 11 10 9 13 13 C 1.50697 * 109.46788 * 184.99953 * 3 2 1 14 14 O 1.21289 * 119.99863 * 244.99581 * 13 3 2 15 15 N 1.34777 * 120.00558 * 64.99440 * 13 3 2 16 16 C 1.39231 * 120.00119 * 185.21721 * 15 13 3 17 17 C 1.39490 * 119.83380 * 213.93112 * 16 15 13 18 18 C 1.36377 * 120.16903 * 179.76252 * 17 16 15 19 19 C 1.40866 * 119.82742 * 0.51296 * 18 17 16 20 20 C 1.41147 * 120.16406 * 179.72254 * 19 18 17 21 21 H 1.08002 * 120.00087 * 210.65029 * 20 19 18 22 22 C 1.39910 * 120.00035 * 30.64902 * 20 19 18 23 23 N 1.30871 * 119.99790 * 9.02334 * 22 20 19 24 24 Si 1.86800 * 119.99830 * 189.01936 * 22 20 19 25 25 H 1.48498 * 109.47615 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.46976 * 120.00439 * 24 22 20 27 27 H 1.48499 * 109.47062 * 239.99817 * 24 22 20 28 28 C 1.40874 * 119.67402 * 359.73730 * 19 18 17 29 29 C 1.36376 * 119.82496 * 0.02562 * 28 19 18 30 30 H 1.09001 * 109.46754 * 60.00777 * 1 2 3 31 31 H 1.08999 * 109.47446 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47493 * 300.00810 * 1 2 3 33 33 H 1.08996 * 109.47493 * 239.99190 * 2 1 3 34 34 H 1.09005 * 109.46445 * 119.99611 * 2 1 3 35 35 H 1.07996 * 120.02344 * 359.97438 * 7 6 5 36 36 H 1.08007 * 119.96025 * 180.02562 * 8 7 6 37 37 H 1.07995 * 119.94681 * 179.97438 * 9 8 7 38 38 H 1.08000 * 119.98007 * 180.02562 * 10 9 8 39 39 H 0.96998 * 119.99503 * 5.21777 * 15 13 3 40 40 H 1.07997 * 119.91064 * 0.02562 * 17 16 15 41 41 H 1.07998 * 120.08474 * 180.25543 * 18 17 16 42 42 H 0.97008 * 119.99399 * 180.02562 * 23 22 20 43 43 H 1.07994 * 120.08510 * 179.97438 * 28 19 18 44 44 H 1.08006 * 119.90959 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9814 -0.8419 5 8 1.6619 2.0814 1.2209 6 6 0.4920 2.7733 1.2188 7 6 -0.2346 2.9059 0.0447 8 6 -1.4238 3.6091 0.0451 9 6 -1.8902 4.1813 1.2142 10 6 -1.1686 4.0512 2.3862 11 6 0.0249 3.3533 2.3903 12 17 0.9346 3.1960 3.8605 13 6 3.5419 1.4442 -0.1238 14 8 4.2250 1.8611 0.7876 15 7 4.1261 0.9826 -1.2472 16 6 5.5129 0.8825 -1.3202 17 6 6.1619 1.1070 -2.5343 18 6 7.5204 1.0156 -2.6124 19 6 8.2673 0.6829 -1.4654 20 6 9.6732 0.5806 -1.5396 21 1 10.1994 -0.1071 -0.8941 22 6 10.3850 1.3700 -2.4493 23 7 9.7751 2.3250 -3.1041 24 14 12.2059 1.0610 -2.7290 25 1 12.6538 -0.0672 -1.8736 26 1 12.4368 0.7215 -4.1562 27 1 12.9746 2.2827 -2.3803 28 6 7.6043 0.4524 -0.2440 29 6 6.2457 0.5523 -0.1803 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 0.1290 2.4597 -0.8691 36 1 -1.9899 3.7120 -0.8690 37 1 -2.8199 4.7309 1.2119 38 1 -1.5352 4.4987 3.2982 39 1 3.5803 0.7200 -2.0049 40 1 5.5875 1.3581 -3.4137 41 1 8.0218 1.1938 -3.5522 42 1 10.2686 2.8721 -3.7351 43 1 8.1704 0.1965 0.6394 44 1 5.7360 0.3755 0.7553 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019931776.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:04 Heat of formation + Delta-G solvation = -28.080834 kcal Electronic energy + Delta-G solvation = -28567.593905 eV Core-core repulsion = 24476.053533 eV Total energy + Delta-G solvation = -4091.540372 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 359.108 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.99603 -39.56129 -37.95803 -37.01865 -36.45231 -34.57235 -33.95549 -32.84605 -31.08990 -30.38114 -29.64621 -29.15325 -27.53515 -24.85899 -23.63232 -22.74701 -22.25842 -21.42660 -20.72034 -19.61339 -18.89051 -17.57722 -17.29041 -16.57739 -16.21490 -16.06164 -15.97138 -15.21231 -14.91071 -14.67554 -14.40042 -14.04526 -13.97788 -13.94437 -13.57881 -13.04923 -12.77469 -12.64115 -12.52972 -12.24170 -12.13829 -12.07791 -11.83395 -11.69222 -11.67242 -11.40912 -11.30062 -11.16996 -11.05139 -10.95847 -10.76167 -10.72277 -9.96916 -9.57374 -9.44533 -9.21531 -9.15356 -8.95112 -8.39232 -7.59080 -6.96132 -6.71486 -4.34929 0.83306 1.01588 2.05856 2.42370 2.61984 2.93543 3.05038 3.07768 3.13140 3.27941 3.31946 3.71805 3.93955 4.30734 4.48545 4.51608 4.54439 4.64963 4.77043 4.80549 4.93162 4.98923 5.15480 5.17332 5.37330 5.38807 5.62870 5.64444 5.74292 5.79890 5.87125 5.95196 6.07897 6.14156 6.30050 6.37261 6.68954 6.83767 7.01337 7.03847 7.14682 7.24499 7.56292 7.65950 7.82444 8.00955 8.18688 8.25350 8.56022 8.66136 8.87208 8.95058 10.21898 Molecular weight = 359.11amu Principal moments of inertia in cm(-1) A = 0.019189 B = 0.002040 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.782098 B =13722.957632 C =14157.271101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.140 4.140 3 C 0.066 3.934 4 H 0.099 0.901 5 O -0.267 6.267 6 C 0.147 3.853 7 C -0.204 4.204 8 C -0.074 4.074 9 C -0.151 4.151 10 C -0.073 4.073 11 C -0.072 4.072 12 Cl -0.052 7.052 13 C 0.498 3.502 14 O -0.502 6.502 15 N -0.645 5.645 16 C -0.002 4.002 17 C -0.115 4.115 18 C -0.145 4.145 19 C 0.105 3.895 20 C -0.458 4.458 21 H 0.078 0.922 22 C 0.071 3.929 23 N -0.802 5.802 24 Si 0.912 3.088 25 H -0.261 1.261 26 H -0.273 1.273 27 H -0.275 1.275 28 C -0.209 4.209 29 C -0.078 4.078 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.141 0.859 36 H 0.131 0.869 37 H 0.131 0.869 38 H 0.138 0.862 39 H 0.395 0.605 40 H 0.091 0.909 41 H 0.123 0.877 42 H 0.279 0.721 43 H 0.096 0.904 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.500 0.274 2.323 23.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.178 4.178 3 C 0.006 3.994 4 H 0.117 0.883 5 O -0.178 6.178 6 C 0.100 3.900 7 C -0.222 4.222 8 C -0.093 4.093 9 C -0.170 4.170 10 C -0.092 4.092 11 C -0.099 4.099 12 Cl -0.023 7.023 13 C 0.282 3.718 14 O -0.376 6.376 15 N -0.290 5.290 16 C -0.094 4.094 17 C -0.135 4.135 18 C -0.165 4.165 19 C 0.103 3.897 20 C -0.488 4.488 21 H 0.096 0.904 22 C -0.145 4.145 23 N -0.429 5.429 24 Si 0.737 3.263 25 H -0.185 1.185 26 H -0.198 1.198 27 H -0.200 1.200 28 C -0.229 4.229 29 C -0.098 4.098 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.106 0.894 34 H 0.102 0.898 35 H 0.158 0.842 36 H 0.148 0.852 37 H 0.149 0.851 38 H 0.156 0.844 39 H 0.228 0.772 40 H 0.109 0.891 41 H 0.141 0.859 42 H 0.090 0.910 43 H 0.115 0.885 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -22.728 0.709 3.144 22.955 hybrid contribution 0.545 -0.034 -0.669 0.864 sum -22.182 0.674 2.474 22.330 Atomic orbital electron populations 1.21963 0.94592 1.02587 1.02206 1.22018 0.97080 0.94032 1.04644 1.22446 0.94312 0.95046 0.87645 0.88331 1.86335 1.34578 1.62927 1.33977 1.18768 0.86438 0.91983 0.92814 1.21337 0.97862 1.05751 0.97292 1.21020 0.94817 0.94959 0.98469 1.21004 1.01096 1.02709 0.92185 1.20932 0.91999 0.96784 0.99472 1.20233 0.96240 1.06171 0.87260 1.98392 1.73964 1.96845 1.33144 1.19995 0.88377 0.79350 0.84042 1.90767 1.64094 1.44009 1.38737 1.42834 1.06740 1.63692 1.15690 1.17133 0.80167 1.15908 0.96174 1.20229 0.95263 1.03207 0.94791 1.20942 0.91275 1.04888 0.99366 1.17700 0.93478 0.88405 0.90139 1.19580 0.91880 1.19961 1.17384 0.90379 1.25911 1.01038 0.93588 0.94000 1.69812 1.38174 1.14177 1.20693 0.86195 0.81873 0.79325 0.78916 1.18472 1.19827 1.19991 1.20730 0.93249 1.11783 0.97134 1.20251 0.94185 0.99243 0.96142 0.92260 0.91809 0.92174 0.89429 0.89809 0.84205 0.85158 0.85060 0.84416 0.77172 0.89071 0.85884 0.91008 0.88540 0.88058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.24 8.44 37.16 0.31 -0.93 16 2 C -0.14 -1.39 5.61 -26.73 -0.15 -1.54 16 3 C 0.07 0.83 2.58 -27.88 -0.07 0.75 16 4 H 0.10 0.97 5.38 -51.93 -0.28 0.69 16 5 O -0.27 -3.92 8.68 -39.35 -0.34 -4.26 16 6 C 0.15 1.80 5.25 -39.19 -0.21 1.59 16 7 C -0.20 -1.89 7.10 -39.44 -0.28 -2.17 16 8 C -0.07 -0.56 10.04 -39.60 -0.40 -0.95 16 9 C -0.15 -1.12 10.04 -39.57 -0.40 -1.52 16 10 C -0.07 -0.66 9.83 -39.57 -0.39 -1.05 16 11 C -0.07 -0.85 6.33 -39.36 -0.25 -1.10 16 12 Cl -0.05 -0.69 28.51 -51.86 -1.48 -2.17 16 13 C 0.50 8.70 6.90 -10.99 -0.08 8.62 16 14 O -0.50 -11.39 14.22 -14.31 -0.20 -11.60 16 15 N -0.64 -10.84 5.19 -9.74 -0.05 -10.89 16 16 C 0.00 -0.04 6.27 -83.57 -0.52 -0.57 16 17 C -0.11 -2.56 9.89 -39.79 -0.39 -2.95 16 18 C -0.14 -3.67 8.59 -39.26 -0.34 -4.00 16 19 C 0.11 2.81 5.54 -106.80 -0.59 2.22 16 20 C -0.46 -12.13 9.04 -37.85 -0.34 -12.47 16 21 H 0.08 1.99 7.86 -52.49 -0.41 1.58 16 22 C 0.07 1.78 5.27 -17.34 -0.09 1.69 16 23 N -0.80 -20.74 10.87 55.55 0.60 -20.14 16 24 Si 0.91 18.73 29.57 -169.99 -5.03 13.70 16 25 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 26 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 27 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 28 C -0.21 -5.30 9.74 -39.26 -0.38 -5.68 16 29 C -0.08 -1.87 8.57 -39.79 -0.34 -2.21 16 30 H 0.06 0.38 6.81 -51.93 -0.35 0.02 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.56 6.20 -51.93 -0.32 0.24 16 33 H 0.09 0.73 7.93 -51.93 -0.41 0.32 16 34 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.14 1.06 4.60 -52.49 -0.24 0.81 16 36 H 0.13 0.63 8.06 -52.48 -0.42 0.21 16 37 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 38 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 39 H 0.39 4.91 8.70 -40.82 -0.36 4.56 16 40 H 0.09 1.75 8.06 -52.49 -0.42 1.32 16 41 H 0.12 3.20 6.29 -52.49 -0.33 2.87 16 42 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 43 H 0.10 2.34 8.06 -52.49 -0.42 1.91 16 44 H 0.10 2.41 6.45 -52.48 -0.34 2.07 16 LS Contribution 378.49 15.07 5.70 5.70 Total: -1.00 -32.12 378.49 -10.84 -42.95 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -5.14 Total: 8.96 kcal Atomic # 6 Polarization: -17.37 SS G_CDS: -4.91 Total: -22.27 kcal Atomic # 7 Polarization: -31.58 SS G_CDS: 0.55 Total: -31.03 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: -0.55 Total: -15.86 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.03 Total: 13.70 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.48 Total: -2.17 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.12 -10.84 -42.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019931776.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.873 kcal (2) G-P(sol) polarization free energy of solvation -32.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds