Wall clock time and date at job start Tue Mar 31 2020 04:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47122 * 2 1 4 4 H 1.08997 * 109.46572 * 304.99117 * 3 2 1 5 5 O 1.42891 * 109.47369 * 64.99468 * 3 2 1 6 6 C 1.35922 * 117.00225 * 267.16017 * 5 3 2 7 7 C 1.38708 * 120.05741 * 355.99078 * 6 5 3 8 8 C 1.38154 * 119.95328 * 179.97438 * 7 6 5 9 9 C 1.38268 * 120.08330 * 0.02562 * 8 7 6 10 10 C 1.38251 * 120.11776 * 359.97438 * 9 8 7 11 11 C 1.38254 * 120.03873 * 0.29830 * 10 9 8 12 12 Cl 1.73607 * 120.03749 * 179.72299 * 11 10 9 13 13 C 1.50697 * 109.46788 * 184.99953 * 3 2 1 14 14 O 1.21289 * 119.99863 * 244.99581 * 13 3 2 15 15 N 1.34777 * 120.00558 * 64.99440 * 13 3 2 16 16 C 1.39231 * 120.00119 * 185.21721 * 15 13 3 17 17 C 1.39490 * 119.83380 * 213.93112 * 16 15 13 18 18 C 1.36377 * 120.16903 * 179.76252 * 17 16 15 19 19 C 1.40866 * 119.82742 * 0.51296 * 18 17 16 20 20 C 1.41147 * 120.16406 * 179.72254 * 19 18 17 21 21 H 1.08002 * 120.00087 * 210.65029 * 20 19 18 22 22 C 1.39910 * 120.00035 * 30.64902 * 20 19 18 23 23 N 1.30871 * 119.99790 * 9.02334 * 22 20 19 24 24 Si 1.86800 * 119.99830 * 189.01936 * 22 20 19 25 25 H 1.48498 * 109.47615 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.46976 * 120.00439 * 24 22 20 27 27 H 1.48499 * 109.47062 * 239.99817 * 24 22 20 28 28 C 1.40874 * 119.67402 * 359.73730 * 19 18 17 29 29 C 1.36376 * 119.82496 * 0.02562 * 28 19 18 30 30 H 1.09001 * 109.46754 * 60.00777 * 1 2 3 31 31 H 1.08999 * 109.47446 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47493 * 300.00810 * 1 2 3 33 33 H 1.08996 * 109.47493 * 239.99190 * 2 1 3 34 34 H 1.09005 * 109.46445 * 119.99611 * 2 1 3 35 35 H 1.07996 * 120.02344 * 359.97438 * 7 6 5 36 36 H 1.08007 * 119.96025 * 180.02562 * 8 7 6 37 37 H 1.07995 * 119.94681 * 179.97438 * 9 8 7 38 38 H 1.08000 * 119.98007 * 180.02562 * 10 9 8 39 39 H 0.96998 * 119.99503 * 5.21777 * 15 13 3 40 40 H 1.07997 * 119.91064 * 0.02562 * 17 16 15 41 41 H 1.07998 * 120.08474 * 180.25543 * 18 17 16 42 42 H 0.97008 * 119.99399 * 180.02562 * 23 22 20 43 43 H 1.07994 * 120.08510 * 179.97438 * 28 19 18 44 44 H 1.08006 * 119.90959 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9814 -0.8419 5 8 1.6619 2.0814 1.2209 6 6 0.4920 2.7733 1.2188 7 6 -0.2346 2.9059 0.0447 8 6 -1.4238 3.6091 0.0451 9 6 -1.8902 4.1813 1.2142 10 6 -1.1686 4.0512 2.3862 11 6 0.0249 3.3533 2.3903 12 17 0.9346 3.1960 3.8605 13 6 3.5419 1.4442 -0.1238 14 8 4.2250 1.8611 0.7876 15 7 4.1261 0.9826 -1.2472 16 6 5.5129 0.8825 -1.3202 17 6 6.1619 1.1070 -2.5343 18 6 7.5204 1.0156 -2.6124 19 6 8.2673 0.6829 -1.4654 20 6 9.6732 0.5806 -1.5396 21 1 10.1994 -0.1071 -0.8941 22 6 10.3850 1.3700 -2.4493 23 7 9.7751 2.3250 -3.1041 24 14 12.2059 1.0610 -2.7290 25 1 12.6538 -0.0672 -1.8736 26 1 12.4368 0.7215 -4.1562 27 1 12.9746 2.2827 -2.3803 28 6 7.6043 0.4524 -0.2440 29 6 6.2457 0.5523 -0.1803 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 0.1290 2.4597 -0.8691 36 1 -1.9899 3.7120 -0.8690 37 1 -2.8199 4.7309 1.2119 38 1 -1.5352 4.4987 3.2982 39 1 3.5803 0.7200 -2.0049 40 1 5.5875 1.3581 -3.4137 41 1 8.0218 1.1938 -3.5522 42 1 10.2686 2.8721 -3.7351 43 1 8.1704 0.1965 0.6394 44 1 5.7360 0.3755 0.7553 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019931776.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:03 Heat of formation + Delta-G solvation = -45.153030 kcal Electronic energy + Delta-G solvation = -28568.334211 eV Core-core repulsion = 24476.053533 eV Total energy + Delta-G solvation = -4092.280678 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 359.108 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.00961 -40.86802 -39.25168 -38.39187 -37.32294 -36.24448 -35.13178 -34.35329 -31.77384 -31.52164 -31.20072 -30.82022 -28.67224 -26.57653 -24.35809 -23.69784 -23.45864 -22.98458 -22.23931 -21.02460 -19.73368 -19.29660 -18.81883 -17.82338 -17.23958 -17.05193 -16.97609 -16.85457 -16.13401 -15.72049 -15.66987 -15.33960 -15.03807 -14.90229 -14.70968 -14.48584 -14.29154 -14.01685 -13.68340 -13.52793 -13.32079 -13.28029 -13.01092 -12.89380 -12.82240 -12.80326 -12.52164 -12.48570 -12.32974 -12.02938 -11.87674 -11.74460 -11.50340 -11.42194 -11.24093 -10.86198 -10.62977 -9.86163 -9.50577 -9.18163 -8.82488 -8.58143 -6.32599 0.15832 0.32024 0.72578 1.10105 1.21720 1.38467 1.39583 1.53995 1.58220 1.69743 2.22369 2.53241 2.66516 2.75987 3.45826 3.55776 3.65103 3.71747 3.84301 3.93537 4.15978 4.30998 4.34934 4.37000 4.38959 4.45700 4.47894 4.72280 4.77925 4.89318 4.99871 5.05846 5.08306 5.11307 5.13367 5.27922 5.28554 5.32359 5.38639 5.45815 5.63652 5.69206 5.84646 5.98049 6.07156 6.21635 6.35148 6.61881 6.65366 6.92325 6.95857 7.29046 8.37058 Molecular weight = 359.11amu Principal moments of inertia in cm(-1) A = 0.019189 B = 0.002040 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.782098 B =13722.957632 C =14157.271101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.135 4.135 3 C 0.076 3.924 4 H 0.135 0.865 5 O -0.302 6.302 6 C 0.119 3.881 7 C -0.203 4.203 8 C -0.067 4.067 9 C -0.143 4.143 10 C -0.078 4.078 11 C -0.098 4.098 12 Cl -0.082 7.082 13 C 0.496 3.504 14 O -0.561 6.561 15 N -0.632 5.632 16 C 0.016 3.984 17 C -0.110 4.110 18 C -0.161 4.161 19 C 0.074 3.926 20 C -0.496 4.496 21 H 0.073 0.927 22 C 0.031 3.969 23 N -0.833 5.833 24 Si 0.987 3.013 25 H -0.261 1.261 26 H -0.260 1.260 27 H -0.269 1.269 28 C -0.228 4.228 29 C -0.091 4.091 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.044 0.956 33 H 0.109 0.891 34 H 0.059 0.941 35 H 0.159 0.841 36 H 0.167 0.833 37 H 0.164 0.836 38 H 0.152 0.848 39 H 0.421 0.579 40 H 0.131 0.869 41 H 0.113 0.887 42 H 0.288 0.712 43 H 0.092 0.908 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.652 0.719 -0.207 26.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.173 4.173 3 C 0.017 3.983 4 H 0.152 0.848 5 O -0.214 6.214 6 C 0.073 3.927 7 C -0.222 4.222 8 C -0.085 4.085 9 C -0.161 4.161 10 C -0.097 4.097 11 C -0.125 4.125 12 Cl -0.053 7.053 13 C 0.283 3.717 14 O -0.439 6.439 15 N -0.279 5.279 16 C -0.077 4.077 17 C -0.130 4.130 18 C -0.181 4.181 19 C 0.071 3.929 20 C -0.526 4.526 21 H 0.091 0.909 22 C -0.183 4.183 23 N -0.460 5.460 24 Si 0.808 3.192 25 H -0.184 1.184 26 H -0.184 1.184 27 H -0.194 1.194 28 C -0.248 4.248 29 C -0.111 4.111 30 H 0.102 0.898 31 H 0.094 0.906 32 H 0.063 0.937 33 H 0.127 0.873 34 H 0.078 0.922 35 H 0.177 0.823 36 H 0.184 0.816 37 H 0.182 0.818 38 H 0.170 0.830 39 H 0.259 0.741 40 H 0.148 0.852 41 H 0.131 0.869 42 H 0.098 0.902 43 H 0.110 0.890 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -25.947 1.140 0.586 25.979 hybrid contribution 1.261 -0.105 0.156 1.275 sum -24.686 1.035 0.742 24.719 Atomic orbital electron populations 1.21925 0.92533 1.03535 1.02637 1.22041 0.98743 0.91998 1.04516 1.22452 0.90134 0.97127 0.88625 0.84809 1.86284 1.36300 1.63942 1.34924 1.19052 0.86435 0.93070 0.94134 1.21588 0.98148 1.05785 0.96650 1.21485 0.94004 0.93173 0.99826 1.21451 1.01633 1.01688 0.91314 1.21218 0.91116 0.96253 1.01073 1.20585 0.97386 1.08088 0.86433 1.98372 1.74914 1.97095 1.34908 1.20986 0.90654 0.77343 0.82702 1.90748 1.66034 1.46413 1.40673 1.42690 1.04934 1.63398 1.16871 1.17175 0.82540 1.12913 0.95084 1.20515 0.94480 1.01736 0.96257 1.20963 0.92649 1.05965 0.98559 1.18014 0.94213 0.89676 0.90955 1.19785 0.92369 1.21336 1.19092 0.90924 1.26743 1.05650 0.92743 0.93129 1.69855 1.40163 1.14789 1.21228 0.85088 0.75780 0.79134 0.79244 1.18436 1.18429 1.19413 1.20838 0.94146 1.12841 0.97015 1.20337 0.93891 0.99904 0.96982 0.89756 0.90637 0.93719 0.87313 0.92210 0.82334 0.81565 0.81823 0.83043 0.74060 0.85153 0.86878 0.90188 0.88965 0.88527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 8.44 71.98 0.61 -1.30 16 2 C -0.14 -2.41 5.61 30.60 0.17 -2.24 16 3 C 0.08 1.78 2.58 29.85 0.08 1.86 16 4 H 0.13 2.12 5.38 -2.39 -0.01 2.11 16 5 O -0.30 -8.84 8.68 -73.68 -0.64 -9.48 16 6 C 0.12 2.77 5.25 22.52 0.12 2.89 16 7 C -0.20 -3.06 7.10 22.36 0.16 -2.90 16 8 C -0.07 -0.69 10.04 22.26 0.22 -0.47 16 9 C -0.14 -1.55 10.04 22.28 0.22 -1.32 16 10 C -0.08 -1.26 9.83 22.28 0.22 -1.04 16 11 C -0.10 -2.29 6.33 22.41 0.14 -2.15 16 12 Cl -0.08 -2.25 28.51 -2.72 -0.08 -2.32 16 13 C 0.50 17.04 6.90 87.66 0.60 17.65 16 14 O -0.56 -26.25 14.22 15.93 0.23 -26.02 16 15 N -0.63 -20.13 5.19 -303.11 -1.57 -21.70 16 16 C 0.02 0.70 6.27 38.57 0.24 0.94 16 17 C -0.11 -4.80 9.89 22.14 0.22 -4.58 16 18 C -0.16 -8.33 8.59 22.48 0.19 -8.14 16 19 C 0.07 4.11 5.54 -21.28 -0.12 3.99 16 20 C -0.50 -27.42 9.04 23.39 0.21 -27.20 16 21 H 0.07 3.91 7.86 -2.91 -0.02 3.89 16 22 C 0.03 1.57 5.27 85.24 0.45 2.02 16 23 N -0.83 -43.89 10.87 21.82 0.24 -43.65 16 24 Si 0.99 38.90 29.57 68.60 2.03 40.93 16 25 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 26 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 27 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 28 C -0.23 -12.20 9.74 22.48 0.22 -11.98 16 29 C -0.09 -4.50 8.57 22.13 0.19 -4.31 16 30 H 0.08 0.65 6.81 -2.39 -0.02 0.64 16 31 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.04 0.74 6.20 -2.39 -0.01 0.72 16 33 H 0.11 1.45 7.93 -2.39 -0.02 1.43 16 34 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 35 H 0.16 1.63 4.60 -2.91 -0.01 1.61 16 36 H 0.17 0.55 8.06 -2.91 -0.02 0.53 16 37 H 0.16 0.72 8.06 -2.91 -0.02 0.70 16 38 H 0.15 1.89 8.06 -2.91 -0.02 1.86 16 39 H 0.42 8.98 8.70 -92.71 -0.81 8.17 16 40 H 0.13 4.60 8.06 -2.91 -0.02 4.58 16 41 H 0.11 6.01 6.29 -2.91 -0.02 5.99 16 42 H 0.29 13.62 8.30 -92.70 -0.77 12.85 16 43 H 0.09 4.80 8.06 -2.91 -0.02 4.78 16 44 H 0.10 4.82 6.45 -2.91 -0.02 4.80 16 Total: -1.00 -76.28 378.49 4.61 -71.67 By element: Atomic # 1 Polarization: 28.60 SS G_CDS: 0.25 Total: 28.86 kcal Atomic # 6 Polarization: -42.43 SS G_CDS: 4.15 Total: -38.28 kcal Atomic # 7 Polarization: -64.01 SS G_CDS: -1.34 Total: -65.35 kcal Atomic # 8 Polarization: -35.08 SS G_CDS: -0.41 Total: -35.50 kcal Atomic # 14 Polarization: 38.90 SS G_CDS: 2.03 Total: 40.93 kcal Atomic # 17 Polarization: -2.25 SS G_CDS: -0.08 Total: -2.32 kcal Total: -76.28 4.61 -71.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019931776.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.515 kcal (2) G-P(sol) polarization free energy of solvation -76.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds