Wall clock time and date at job start Tue Mar 31 2020 04:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.46507 * 2 1 4 4 H 1.08992 * 109.47564 * 55.00064 * 3 2 1 5 5 O 1.42896 * 109.47159 * 294.99515 * 3 2 1 6 6 C 1.35918 * 116.99969 * 94.45027 * 5 3 2 7 7 C 1.38709 * 120.05912 * 4.66027 * 6 5 3 8 8 C 1.38160 * 119.95400 * 179.74037 * 7 6 5 9 9 C 1.38267 * 120.07957 * 0.53272 * 8 7 6 10 10 C 1.38246 * 120.12079 * 359.72048 * 9 8 7 11 11 C 1.38257 * 120.04273 * 0.02562 * 10 9 8 12 12 Cl 1.73597 * 120.04294 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.46631 * 174.99723 * 3 2 1 14 14 O 1.21280 * 119.99811 * 114.99754 * 13 3 2 15 15 N 1.34776 * 120.00340 * 294.99919 * 13 3 2 16 16 C 1.39228 * 120.00057 * 174.33614 * 15 13 3 17 17 C 1.39486 * 119.83889 * 325.32205 * 16 15 13 18 18 C 1.36372 * 120.17292 * 180.23080 * 17 16 15 19 19 C 1.40871 * 119.82520 * 359.50700 * 18 17 16 20 20 C 1.41153 * 120.15954 * 180.25146 * 19 18 17 21 21 H 1.07996 * 120.00283 * 34.56721 * 20 19 18 22 22 C 1.39904 * 119.99503 * 214.56788 * 20 19 18 23 23 N 1.30868 * 120.00357 * 5.49696 * 22 20 19 24 24 Si 1.86801 * 119.99798 * 185.49426 * 22 20 19 25 25 H 1.48496 * 109.47190 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.46926 * 120.00011 * 24 22 20 27 27 H 1.48500 * 109.47270 * 239.99776 * 24 22 20 28 28 C 1.40863 * 119.67605 * 0.49169 * 19 18 17 29 29 C 1.36387 * 119.82518 * 359.75833 * 28 19 18 30 30 H 1.09005 * 109.46448 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47344 * 299.99993 * 1 2 3 32 32 H 1.08997 * 109.47078 * 60.00664 * 1 2 3 33 33 H 1.08997 * 109.47344 * 240.00007 * 2 1 3 34 34 H 1.08997 * 109.47078 * 119.99335 * 2 1 3 35 35 H 1.08002 * 120.02416 * 359.97438 * 7 6 5 36 36 H 1.08004 * 119.95808 * 180.25115 * 8 7 6 37 37 H 1.08002 * 119.94570 * 179.74496 * 9 8 7 38 38 H 1.07997 * 119.98183 * 180.02562 * 10 9 8 39 39 H 0.96996 * 119.99544 * 354.33836 * 15 13 3 40 40 H 1.08002 * 119.90622 * 359.96253 * 17 16 15 41 41 H 1.07996 * 120.08350 * 179.74301 * 18 17 16 42 42 H 0.96998 * 120.00268 * 180.02562 * 23 22 20 43 43 H 1.07993 * 120.09181 * 179.73684 * 28 19 18 44 44 H 1.07995 * 119.91318 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8417 5 8 1.6619 2.0814 -1.2211 6 6 0.5089 2.8010 -1.2098 7 6 -0.1925 2.9709 -0.0252 8 6 -1.3614 3.7074 -0.0152 9 6 -1.8387 4.2659 -1.1865 10 6 -1.1450 4.0942 -2.3700 11 6 0.0281 3.3626 -2.3848 12 17 0.8988 3.1464 -3.8709 13 6 3.5418 1.4444 0.1239 14 8 4.2249 1.8612 -0.7875 15 7 4.1259 0.9830 1.2474 16 6 5.5122 0.8743 1.3172 17 6 6.2392 0.5261 0.1788 18 6 7.5968 0.4131 0.2405 19 6 8.2659 0.6592 1.4555 20 6 9.6714 0.5494 1.5261 21 1 10.2782 0.8295 0.6777 22 6 10.2783 0.0777 2.6950 23 7 9.5417 -0.3627 3.6830 24 14 12.1402 0.0766 2.8456 25 1 12.7379 0.6214 1.6002 26 1 12.5440 0.9211 3.9985 27 1 12.6188 -1.3130 3.0583 28 6 7.5250 1.0103 2.6009 29 6 6.1672 1.1144 2.5250 30 1 -0.3632 -1.0278 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5137 0.8900 35 1 0.1769 2.5310 0.8894 36 1 -1.9054 3.8431 0.9079 37 1 -2.7548 4.8377 -1.1770 38 1 -1.5196 4.5317 -3.2835 39 1 3.5805 0.7266 2.0074 40 1 5.7251 0.3413 -0.7528 41 1 8.1579 0.1393 -0.6408 42 1 9.9625 -0.6894 4.4936 43 1 8.0306 1.1963 3.5369 44 1 5.5977 1.3832 3.4023 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019931778.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:09 Heat of formation + Delta-G solvation = -28.546227 kcal Electronic energy + Delta-G solvation = -28534.683954 eV Core-core repulsion = 24443.123401 eV Total energy + Delta-G solvation = -4091.560553 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 359.108 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.99861 -39.58060 -37.97417 -37.03395 -36.46848 -34.57802 -33.94812 -32.83526 -31.10761 -30.37528 -29.66164 -29.16777 -27.55379 -24.86048 -23.62025 -22.75800 -22.27395 -21.43955 -20.73524 -19.63059 -18.90843 -17.59309 -17.28251 -16.59401 -16.23508 -16.08071 -15.95188 -15.19356 -14.90987 -14.70795 -14.39850 -14.06192 -13.99774 -13.94836 -13.61343 -13.05526 -12.76825 -12.64720 -12.53712 -12.25742 -12.17574 -12.07637 -11.79436 -11.71110 -11.67850 -11.54290 -11.29622 -11.18719 -11.00392 -10.93169 -10.75356 -10.57653 -10.06580 -9.80131 -9.39049 -9.23829 -9.17647 -8.83080 -8.40765 -7.60711 -6.94516 -6.70565 -4.35631 0.81928 1.00312 2.04291 2.39988 2.61092 2.93175 3.03508 3.08579 3.14223 3.26312 3.30436 3.70356 3.95650 4.28647 4.48004 4.50936 4.53632 4.65430 4.76568 4.79759 4.91910 4.99169 5.14456 5.16942 5.36752 5.38236 5.62196 5.63601 5.73816 5.79398 5.86038 5.95414 6.06710 6.12704 6.28668 6.34123 6.66337 6.82328 7.00177 7.02960 7.14117 7.23999 7.55770 7.64002 7.80037 8.01622 8.16119 8.24711 8.55156 8.64672 8.87874 8.94445 10.25143 Molecular weight = 359.11amu Principal moments of inertia in cm(-1) A = 0.021104 B = 0.002005 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.422476 B =13961.765847 C =14540.725781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.139 4.139 3 C 0.065 3.935 4 H 0.100 0.900 5 O -0.267 6.267 6 C 0.148 3.852 7 C -0.204 4.204 8 C -0.074 4.074 9 C -0.152 4.152 10 C -0.073 4.073 11 C -0.072 4.072 12 Cl -0.053 7.053 13 C 0.499 3.501 14 O -0.504 6.504 15 N -0.646 5.646 16 C 0.003 3.997 17 C -0.080 4.080 18 C -0.205 4.205 19 C 0.107 3.893 20 C -0.462 4.462 21 H 0.078 0.922 22 C 0.072 3.928 23 N -0.809 5.809 24 Si 0.912 3.088 25 H -0.261 1.261 26 H -0.274 1.274 27 H -0.275 1.275 28 C -0.140 4.140 29 C -0.116 4.116 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.140 0.860 36 H 0.131 0.869 37 H 0.132 0.868 38 H 0.138 0.862 39 H 0.395 0.605 40 H 0.101 0.899 41 H 0.097 0.903 42 H 0.278 0.722 43 H 0.122 0.878 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.332 4.138 -3.211 23.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.177 4.177 3 C 0.005 3.995 4 H 0.117 0.883 5 O -0.178 6.178 6 C 0.100 3.900 7 C -0.223 4.223 8 C -0.092 4.092 9 C -0.170 4.170 10 C -0.092 4.092 11 C -0.099 4.099 12 Cl -0.024 7.024 13 C 0.283 3.717 14 O -0.377 6.377 15 N -0.291 5.291 16 C -0.089 4.089 17 C -0.100 4.100 18 C -0.225 4.225 19 C 0.104 3.896 20 C -0.493 4.493 21 H 0.096 0.904 22 C -0.144 4.144 23 N -0.436 5.436 24 Si 0.737 3.263 25 H -0.185 1.185 26 H -0.199 1.199 27 H -0.200 1.200 28 C -0.159 4.159 29 C -0.136 4.136 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.102 0.898 34 H 0.106 0.894 35 H 0.158 0.842 36 H 0.149 0.851 37 H 0.149 0.851 38 H 0.156 0.844 39 H 0.229 0.771 40 H 0.119 0.881 41 H 0.115 0.885 42 H 0.089 0.911 43 H 0.140 0.860 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -22.593 4.266 -3.970 23.332 hybrid contribution 0.542 -0.267 0.701 0.925 sum -22.051 3.999 -3.270 22.648 Atomic orbital electron populations 1.21923 0.94566 1.02603 1.02167 1.22009 0.97096 0.93945 1.04680 1.22463 0.94233 0.95122 0.87693 0.88251 1.86335 1.36070 1.61697 1.33712 1.18769 0.86647 0.91790 0.92759 1.21318 0.98347 1.05488 0.97141 1.21024 0.94776 0.94854 0.98539 1.21005 1.01203 1.02766 0.92034 1.20933 0.92298 0.96479 0.99446 1.20233 0.96817 1.06016 0.86852 1.98390 1.76001 1.96228 1.31743 1.20014 0.88445 0.79266 0.83955 1.90760 1.64140 1.44115 1.38718 1.42851 1.06795 1.63826 1.15585 1.17146 0.80227 1.15446 0.96046 1.20256 0.94315 0.99327 0.96114 1.20795 0.93019 1.09869 0.98796 1.17702 0.93624 0.87537 0.90693 1.19548 0.91933 1.38585 0.99219 0.90419 1.25869 1.00674 0.93022 0.94819 1.69784 1.37336 1.31408 1.05107 0.86191 0.82271 0.78546 0.79259 1.18522 1.19893 1.20028 1.20940 0.91718 1.03211 1.00072 1.20253 0.95259 1.03319 0.94780 0.91775 0.92306 0.92231 0.89795 0.89395 0.84234 0.85148 0.85051 0.84412 0.77102 0.88080 0.88463 0.91114 0.86042 0.89022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 8.50 37.16 0.32 -0.93 16 2 C -0.14 -1.40 5.61 -26.73 -0.15 -1.55 16 3 C 0.06 0.81 2.57 -27.88 -0.07 0.73 16 4 H 0.10 0.95 5.28 -51.93 -0.27 0.68 16 5 O -0.27 -3.85 8.66 -39.34 -0.34 -4.19 16 6 C 0.15 1.77 5.25 -39.19 -0.21 1.57 16 7 C -0.20 -1.86 7.30 -39.44 -0.29 -2.15 16 8 C -0.07 -0.54 10.04 -39.60 -0.40 -0.94 16 9 C -0.15 -1.10 10.04 -39.57 -0.40 -1.50 16 10 C -0.07 -0.64 9.83 -39.57 -0.39 -1.03 16 11 C -0.07 -0.84 6.33 -39.36 -0.25 -1.09 16 12 Cl -0.05 -0.68 28.50 -51.86 -1.48 -2.15 16 13 C 0.50 8.57 6.89 -10.98 -0.08 8.50 16 14 O -0.50 -11.18 14.27 -14.30 -0.20 -11.39 16 15 N -0.65 -10.78 5.19 -9.74 -0.05 -10.83 16 16 C 0.00 0.07 6.26 -83.57 -0.52 -0.46 16 17 C -0.08 -1.91 8.57 -39.79 -0.34 -2.25 16 18 C -0.20 -5.18 9.74 -39.26 -0.38 -5.56 16 19 C 0.11 2.85 5.50 -106.80 -0.59 2.26 16 20 C -0.46 -12.27 9.03 -37.85 -0.34 -12.61 16 21 H 0.08 2.01 7.85 -52.49 -0.41 1.59 16 22 C 0.07 1.79 5.31 -17.34 -0.09 1.70 16 23 N -0.81 -20.69 10.95 55.55 0.61 -20.08 16 24 Si 0.91 18.80 29.56 -169.99 -5.03 13.78 16 25 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 26 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 27 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 28 C -0.14 -3.53 8.57 -39.26 -0.34 -3.86 16 29 C -0.12 -2.57 9.90 -39.79 -0.39 -2.97 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.38 7.00 -51.93 -0.36 0.01 16 32 H 0.06 0.55 6.34 -51.93 -0.33 0.22 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.09 0.75 7.95 -51.93 -0.41 0.34 16 35 H 0.14 1.03 4.76 -52.49 -0.25 0.78 16 36 H 0.13 0.62 8.06 -52.48 -0.42 0.19 16 37 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 38 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 39 H 0.40 4.95 8.72 -40.82 -0.36 4.59 16 40 H 0.10 2.39 6.50 -52.49 -0.34 2.04 16 41 H 0.10 2.35 8.06 -52.49 -0.42 1.92 16 42 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 43 H 0.12 3.15 6.46 -52.49 -0.34 2.81 16 44 H 0.09 1.75 8.06 -52.49 -0.42 1.32 16 LS Contribution 379.43 15.07 5.72 5.72 Total: -1.00 -31.75 379.43 -10.85 -42.60 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -5.17 Total: 8.67 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: -4.91 Total: -22.13 kcal Atomic # 7 Polarization: -31.47 SS G_CDS: 0.56 Total: -30.91 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -0.54 Total: -15.58 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.78 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.48 Total: -2.15 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.75 -10.85 -42.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019931778.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.057 kcal (2) G-P(sol) polarization free energy of solvation -31.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds