Wall clock time and date at job start Tue Mar 31 2020 05:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35898 * 117.00013 * 2 1 4 4 C 1.38789 * 120.02945 * 0.02699 * 3 2 1 5 5 C 1.38149 * 120.05712 * 179.97438 * 4 3 2 6 6 C 1.38201 * 120.10717 * 359.74437 * 5 4 3 7 7 C 1.38748 * 120.05337 * 0.50692 * 6 5 4 8 8 O 1.35905 * 120.02508 * 179.76913 * 7 6 5 9 9 C 1.42896 * 116.99931 * 359.72254 * 8 7 6 10 10 C 1.50699 * 109.46845 * 179.97438 * 9 8 7 11 11 N 1.29493 * 120.00345 * 0.02562 * 10 9 8 12 12 O 1.41606 * 119.99676 * 359.97438 * 11 10 9 13 13 C 1.47337 * 120.00191 * 180.02562 * 10 9 8 14 14 C 1.39780 * 120.11264 * 359.97438 * 13 10 9 15 15 C 1.37649 * 119.97117 * 179.97438 * 14 13 10 16 16 C 1.39190 * 120.20969 * 359.97438 * 15 14 13 17 17 O 1.35641 * 119.88349 * 180.02562 * 16 15 14 18 18 C 1.34807 * 117.00379 * 174.44849 * 17 16 15 19 19 H 1.08000 * 120.00266 * 5.06149 * 18 17 16 20 20 C 1.38669 * 120.00426 * 185.06151 * 18 17 16 21 21 N 1.31544 * 120.00374 * 180.02562 * 20 18 17 22 22 Si 1.86805 * 119.99490 * 0.02562 * 20 18 17 23 23 H 1.48493 * 109.47068 * 90.00221 * 22 20 18 24 24 H 1.48500 * 109.46772 * 209.99827 * 22 20 18 25 25 H 1.48494 * 109.47049 * 330.00031 * 22 20 18 26 26 C 1.38867 * 120.23903 * 0.02562 * 16 15 14 27 27 C 1.38360 * 120.02070 * 359.74330 * 26 16 15 28 28 O 1.35763 * 120.10329 * 180.25656 * 27 26 16 29 29 C 1.38609 * 120.02588 * 180.02562 * 3 2 1 30 30 H 1.08999 * 109.47213 * 59.99769 * 1 2 3 31 31 H 1.08994 * 109.46985 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46923 * 299.99557 * 1 2 3 33 33 H 1.08002 * 119.97067 * 359.97438 * 4 3 2 34 34 H 1.08000 * 119.94750 * 179.97438 * 5 4 3 35 35 H 1.08000 * 119.97307 * 180.25182 * 6 5 4 36 36 H 1.08999 * 109.47211 * 299.99939 * 9 8 7 37 37 H 1.09000 * 109.47048 * 60.00411 * 9 8 7 38 38 H 0.96698 * 113.99540 * 180.02562 * 12 11 10 39 39 H 1.08005 * 120.01502 * 0.02562 * 14 13 10 40 40 H 1.07994 * 119.89195 * 180.02562 * 15 14 13 41 41 H 0.96997 * 120.00139 * 180.02562 * 21 20 18 42 42 H 1.07999 * 119.99021 * 180.02562 * 26 16 15 43 43 H 0.96707 * 114.00120 * 270.22855 * 28 27 26 44 44 H 1.08002 * 120.05501 * 0.04399 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2907 2.3752 0.0006 5 6 1.9173 3.6064 0.0011 6 6 3.2972 3.6820 0.0064 7 6 4.0567 2.5209 0.0006 8 8 5.4137 2.5959 0.0011 9 6 5.9911 3.9030 0.0016 10 6 7.4938 3.7883 0.0027 11 7 8.0540 2.6208 0.0026 12 8 7.2547 1.4519 0.0019 13 6 8.3255 5.0044 0.0039 14 6 7.7233 6.2659 0.0035 15 6 8.5032 7.4001 0.0053 16 6 9.8911 7.2958 0.0079 17 8 10.6532 8.4178 0.0101 18 6 11.9858 8.2524 0.1288 19 1 12.4083 7.2585 0.1344 20 6 12.8144 9.3585 0.2438 21 7 14.1148 9.1971 0.3591 22 14 12.0836 11.0776 0.2349 23 1 11.7606 11.4853 1.6258 24 1 13.0651 12.0296 -0.3446 25 1 10.8446 11.0846 -0.5834 26 6 10.4986 6.0470 0.0083 27 6 9.7240 4.9005 0.0115 28 8 10.3161 3.6788 0.0171 29 6 3.4301 1.2840 -0.0005 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 0.2121 2.3187 0.0006 34 1 1.3278 4.5114 0.0011 35 1 3.7848 4.6457 0.0109 36 1 5.6683 4.4432 -0.8884 37 1 5.6677 4.4428 0.8916 38 1 7.7619 0.6287 0.0022 39 1 6.6466 6.3505 0.0027 40 1 8.0366 8.3741 0.0054 41 1 14.6942 9.9707 0.4399 42 1 11.5758 5.9707 0.0108 43 1 10.4923 3.3229 -0.8647 44 1 4.0196 0.3791 -0.0017 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020761596.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:54 Heat of formation + Delta-G solvation = -63.153759 kcal Electronic energy + Delta-G solvation = -30474.066781 eV Core-core repulsion = 25940.296368 eV Total energy + Delta-G solvation = -4533.770413 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 359.129 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.66069 -39.79304 -39.26559 -38.00066 -36.95508 -36.05201 -35.61106 -33.40647 -32.51736 -31.17726 -29.73103 -29.64668 -28.67727 -27.96271 -27.00843 -25.54378 -23.02520 -22.61639 -22.13702 -21.64317 -19.56666 -18.96216 -18.32088 -18.05409 -17.33720 -16.76532 -16.47014 -16.38796 -16.24509 -15.96832 -15.91096 -15.28465 -15.12364 -14.73534 -14.42157 -14.11557 -13.91501 -13.89288 -13.75964 -13.51171 -13.29355 -13.03694 -12.78358 -12.75149 -12.43476 -12.40856 -11.96420 -11.92993 -11.89870 -11.47972 -11.19785 -11.07546 -11.06475 -10.87425 -10.42683 -10.30247 -9.70436 -9.60683 -9.37440 -8.97470 -8.70465 -8.33853 -8.30888 -7.44205 -6.62164 -4.27760 1.14600 1.20349 1.27509 1.83476 2.57862 2.70166 3.10706 3.14802 3.26234 3.27247 3.40717 3.52951 4.06664 4.15440 4.43683 4.49663 4.60419 4.68503 4.73443 4.77324 4.80176 4.86924 4.92149 4.92908 5.07051 5.09260 5.09689 5.29578 5.35863 5.63130 5.69281 5.76005 5.89866 5.96674 6.02598 6.19370 6.20037 6.26153 6.38453 6.68565 6.79884 6.93121 7.04964 7.11790 7.21998 7.27766 7.57229 7.78763 7.99816 8.15070 8.70491 9.28086 10.43858 Molecular weight = 359.13amu Principal moments of inertia in cm(-1) A = 0.022468 B = 0.001846 C = 0.001709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.918034 B =15164.016538 C =16381.209714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.316 6.316 3 C 0.162 3.838 4 C -0.251 4.251 5 C -0.040 4.040 6 C -0.249 4.249 7 C 0.173 3.827 8 O -0.273 6.273 9 C 0.067 3.933 10 C 0.182 3.818 11 N -0.316 5.316 12 O -0.388 6.388 13 C -0.178 4.178 14 C -0.036 4.036 15 C -0.197 4.197 16 C 0.185 3.815 17 O -0.199 6.199 18 C -0.393 4.393 19 H 0.112 0.888 20 C 0.067 3.933 21 N -0.865 5.865 22 Si 0.907 3.093 23 H -0.271 1.271 24 H -0.280 1.280 25 H -0.257 1.257 26 C -0.257 4.257 27 C 0.198 3.802 28 O -0.482 6.482 29 C -0.186 4.186 30 H 0.056 0.944 31 H 0.100 0.900 32 H 0.056 0.944 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.130 0.870 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.387 0.613 39 H 0.123 0.877 40 H 0.127 0.873 41 H 0.284 0.716 42 H 0.145 0.855 43 H 0.386 0.614 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.729 -12.206 -2.300 26.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.229 6.229 3 C 0.117 3.883 4 C -0.270 4.270 5 C -0.058 4.058 6 C -0.268 4.268 7 C 0.126 3.874 8 O -0.184 6.184 9 C -0.011 4.011 10 C -0.006 4.006 11 N -0.059 5.059 12 O -0.294 6.294 13 C -0.182 4.182 14 C -0.057 4.057 15 C -0.217 4.217 16 C 0.130 3.870 17 O -0.101 6.101 18 C -0.467 4.467 19 H 0.129 0.871 20 C -0.139 4.139 21 N -0.500 5.500 22 Si 0.732 3.268 23 H -0.196 1.196 24 H -0.205 1.205 25 H -0.181 1.181 26 C -0.277 4.277 27 C 0.151 3.849 28 O -0.292 6.292 29 C -0.205 4.205 30 H 0.074 0.926 31 H 0.118 0.882 32 H 0.074 0.926 33 H 0.145 0.855 34 H 0.145 0.855 35 H 0.148 0.852 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.233 0.767 39 H 0.140 0.860 40 H 0.145 0.855 41 H 0.094 0.906 42 H 0.163 0.837 43 H 0.243 0.757 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -22.976 -12.244 -1.687 26.090 hybrid contribution -0.752 0.698 -0.415 1.106 sum -23.728 -11.547 -2.102 26.472 Atomic orbital electron populations 1.23067 0.78190 1.03945 1.01466 1.86062 1.21488 1.26870 1.88483 1.18570 0.91372 0.84149 0.94229 1.21091 0.99947 0.92260 1.13704 1.20689 0.93735 0.97072 0.94351 1.21236 0.94937 0.97749 1.12882 1.18710 0.83064 0.93136 0.92476 1.86415 1.15946 1.28720 1.87369 1.22203 0.91692 0.84348 1.02809 1.22795 0.90461 0.91686 0.95693 1.76676 1.21225 0.93160 1.14822 1.88673 1.31950 1.13506 1.95310 1.17883 0.91364 0.89373 1.19540 1.20516 0.98546 0.90122 0.96487 1.20093 0.90611 0.98747 1.12209 1.19060 0.90476 0.85932 0.91559 1.83539 1.20349 1.28551 1.77655 1.20879 0.76961 0.97285 1.51625 0.87116 1.24540 0.94461 0.99792 0.95068 1.69632 1.02601 1.32630 1.45141 0.86158 0.79644 0.81600 0.79435 1.19608 1.20507 1.18134 1.21441 1.01846 0.91004 1.13398 1.18174 0.88504 0.84522 0.93673 1.84733 1.80743 1.30967 1.32767 1.19393 0.91235 0.97000 1.12855 0.92551 0.88199 0.92554 0.85534 0.85507 0.85198 0.89858 0.89906 0.76684 0.85959 0.85517 0.90608 0.83744 0.75740 0.84366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.32 -3.16 10.49 -19.42 -0.20 -3.37 16 3 C 0.16 1.77 6.68 -39.24 -0.26 1.51 16 4 C -0.25 -2.32 9.04 -39.41 -0.36 -2.68 16 5 C -0.04 -0.37 10.04 -39.63 -0.40 -0.77 16 6 C -0.25 -2.64 9.04 -39.41 -0.36 -2.99 16 7 C 0.17 2.18 6.68 -39.24 -0.26 1.92 16 8 O -0.27 -3.83 6.86 -44.38 -0.30 -4.14 16 9 C 0.07 0.85 3.83 36.01 0.14 0.99 16 10 C 0.18 2.80 7.11 -79.88 -0.57 2.24 16 11 N -0.32 -5.06 9.96 35.04 0.35 -4.71 16 12 O -0.39 -5.56 11.66 -36.41 -0.42 -5.99 16 13 C -0.18 -2.93 5.88 -104.87 -0.62 -3.54 16 14 C -0.04 -0.54 9.45 -39.22 -0.37 -0.91 16 15 C -0.20 -3.39 9.97 -39.44 -0.39 -3.79 16 16 C 0.19 3.89 6.65 -39.00 -0.26 3.63 16 17 O -0.20 -4.81 8.58 0.45 0.00 -4.80 16 18 C -0.39 -10.35 9.94 30.89 0.31 -10.04 16 19 H 0.11 3.01 5.42 -52.49 -0.28 2.73 16 20 C 0.07 1.77 5.49 -17.52 -0.10 1.67 16 21 N -0.86 -23.65 13.96 55.48 0.77 -22.88 16 22 Si 0.91 20.20 28.62 -169.99 -4.86 15.34 16 23 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 24 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 25 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 26 C -0.26 -5.25 9.09 -39.30 -0.36 -5.61 16 27 C 0.20 3.62 6.71 -38.78 -0.26 3.36 16 28 O -0.48 -8.20 11.37 -19.00 -0.22 -8.41 16 29 C -0.19 -2.28 9.93 -39.29 -0.39 -2.67 16 30 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 31 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 33 H 0.13 0.85 6.29 -52.49 -0.33 0.52 16 34 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 35 H 0.13 1.16 6.29 -52.49 -0.33 0.83 16 36 H 0.08 0.90 7.62 -51.93 -0.40 0.50 16 37 H 0.08 0.93 7.59 -51.93 -0.39 0.54 16 38 H 0.39 3.90 9.28 45.56 0.42 4.32 16 39 H 0.12 1.34 7.04 -52.48 -0.37 0.97 16 40 H 0.13 1.94 8.06 -52.49 -0.42 1.52 16 41 H 0.28 7.13 8.31 -40.82 -0.34 6.80 16 42 H 0.15 3.16 5.61 -52.49 -0.29 2.86 16 43 H 0.39 5.05 9.06 45.56 0.41 5.46 16 44 H 0.14 1.69 8.06 -52.49 -0.42 1.26 16 LS Contribution 378.30 15.07 5.70 5.70 Total: -1.00 -32.00 378.30 -5.88 -37.88 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -3.18 Total: 11.92 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: -3.51 Total: -16.53 kcal Atomic # 7 Polarization: -28.71 SS G_CDS: 1.12 Total: -27.59 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: -1.14 Total: -26.71 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -4.86 Total: 15.34 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.00 -5.88 -37.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020761596.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.273 kcal (2) G-P(sol) polarization free energy of solvation -32.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds