Wall clock time and date at job start Tue Mar 31 2020 07:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31424 * 1 3 3 Si 1.86799 * 119.99764 * 2 1 4 4 H 1.48502 * 109.46861 * 239.99783 * 3 2 1 5 5 H 1.48504 * 109.47518 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47277 * 120.00002 * 3 2 1 7 7 C 1.38885 * 119.99853 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99577 * 189.24525 * 7 2 1 9 9 N 1.37133 * 120.00208 * 9.24626 * 7 2 1 10 10 C 1.34778 * 120.00282 * 235.66695 * 9 7 2 11 11 O 1.21280 * 119.99954 * 185.67647 * 10 9 7 12 12 C 1.50699 * 120.00024 * 5.68055 * 10 9 7 13 13 S 1.81390 * 109.47300 * 174.84548 * 12 10 9 14 14 C 1.81410 * 102.99904 * 179.97438 * 13 12 10 15 15 C 1.50698 * 109.47062 * 179.97438 * 14 13 12 16 16 C 1.38247 * 119.98729 * 269.72974 * 15 14 13 17 17 C 1.38222 * 120.01014 * 179.72901 * 16 15 14 18 18 C 1.38357 * 119.98603 * 0.54212 * 17 16 15 19 19 Cl 1.73594 * 120.00899 * 179.70755 * 18 17 16 20 20 C 1.38354 * 119.97177 * 359.72799 * 18 17 16 21 21 C 1.38209 * 119.99004 * 359.97438 * 20 18 17 22 22 C 1.39790 * 119.99880 * 55.67188 * 9 7 2 23 23 C 1.38959 * 120.07739 * 355.18397 * 22 9 7 24 24 C 1.38086 * 119.92163 * 179.97438 * 23 22 9 25 25 C 1.38313 * 120.07696 * 359.97438 * 24 23 22 26 26 C 1.38310 * 120.15438 * 0.02562 * 25 24 23 27 27 C 1.38079 * 120.08079 * 359.97438 * 26 25 24 28 28 H 0.97003 * 120.00115 * 4.98874 * 1 2 3 29 29 H 1.09006 * 109.46828 * 294.84680 * 12 10 9 30 30 H 1.09000 * 109.47154 * 54.83322 * 12 10 9 31 31 H 1.08990 * 109.46821 * 299.99562 * 14 13 12 32 32 H 1.08996 * 109.46827 * 59.99853 * 14 13 12 33 33 H 1.07999 * 119.99372 * 359.97438 * 16 15 14 34 34 H 1.07995 * 120.00295 * 180.26966 * 17 16 15 35 35 H 1.08001 * 119.99809 * 179.97438 * 20 18 17 36 36 H 1.07999 * 119.99393 * 179.97438 * 21 20 18 37 37 H 1.07999 * 120.03828 * 359.71039 * 23 22 9 38 38 H 1.07995 * 119.96006 * 179.97438 * 24 23 22 39 39 H 1.08001 * 119.92144 * 179.97438 * 25 24 23 40 40 H 1.08000 * 119.95971 * 180.02562 * 26 25 24 41 41 H 1.07997 * 120.04158 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2832 2.7465 -0.0006 6 1 3.1019 1.6965 1.2125 7 6 2.0086 -1.2028 0.0005 8 1 3.0782 -1.2088 0.1508 9 7 1.3363 -2.3828 -0.1898 10 6 1.4382 -3.3710 0.7211 11 8 0.9287 -4.4501 0.5047 12 6 2.1851 -3.1350 2.0085 13 16 2.0162 -4.5883 3.0807 14 6 2.9663 -4.1212 4.5539 15 6 2.9213 -5.2443 5.5576 16 6 1.9174 -5.2824 6.5073 17 6 1.8724 -6.3154 7.4247 18 6 2.8387 -7.3052 7.3994 19 17 2.7872 -8.5987 8.5560 20 6 3.8463 -7.2634 6.4522 21 6 3.8868 -6.2334 5.5315 22 6 0.5454 -2.5608 -1.3286 23 6 0.3586 -1.5096 -2.2180 24 6 -0.4229 -1.6891 -3.3422 25 6 -1.0190 -2.9136 -3.5837 26 6 -0.8352 -3.9620 -2.7005 27 6 -0.0550 -3.7897 -1.5744 28 1 -0.4850 0.8369 -0.0731 29 1 3.2395 -2.9646 1.7908 30 1 1.7726 -2.2612 2.5130 31 1 4.0010 -3.9265 4.2721 32 1 2.5345 -3.2227 4.9948 33 1 1.1659 -4.5071 6.5300 34 1 1.0856 -6.3474 8.1638 35 1 4.6011 -8.0357 6.4323 36 1 4.6735 -6.2005 4.7924 37 1 0.8206 -0.5521 -2.0280 38 1 -0.5688 -0.8725 -4.0336 39 1 -1.6301 -3.0511 -4.4635 40 1 -1.3018 -4.9170 -2.8924 41 1 0.0877 -4.6086 -0.8850 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000021325779.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:36 Heat of formation + Delta-G solvation = 30.800435 kcal Electronic energy + Delta-G solvation = -25721.315684 eV Core-core repulsion = 21911.936893 eV Total energy + Delta-G solvation = -3809.378791 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 361.064 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.76556 -39.54669 -37.25337 -36.73964 -35.12588 -32.77035 -32.07330 -31.29143 -30.30317 -29.64359 -27.92639 -26.95941 -25.27216 -23.06911 -21.99754 -21.67749 -21.19922 -19.59388 -17.96173 -17.32918 -16.39176 -15.96957 -15.87862 -15.66065 -15.41278 -15.21893 -14.67988 -14.47214 -14.11722 -13.78165 -13.69184 -13.46788 -13.27346 -13.18868 -12.90502 -12.71949 -12.47979 -12.30360 -11.77964 -11.69753 -11.65940 -11.46474 -11.36298 -11.33411 -11.19007 -11.03399 -10.90024 -10.59722 -10.11501 -9.73890 -9.32317 -9.25788 -8.83348 -8.69560 -8.27988 -7.84068 -7.33984 -6.96927 -6.40822 -4.67154 0.72576 1.08586 1.89567 1.94716 2.35203 2.52149 2.82668 2.95977 3.04624 3.05515 3.50972 3.61418 3.86497 4.41139 4.49462 4.50476 4.64310 4.66744 4.93494 5.06103 5.10358 5.32270 5.36721 5.55897 5.60957 5.66492 5.73302 5.84107 5.93997 5.97410 5.99849 6.04084 6.12944 6.30605 6.55558 6.65625 6.68419 6.84939 7.08574 7.13677 7.45908 7.56772 7.62309 7.70088 7.96430 8.35214 8.72764 9.10271 9.48967 10.36688 Molecular weight = 361.06amu Principal moments of inertia in cm(-1) A = 0.014521 B = 0.002162 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.742761 B =12950.291356 C =14380.127947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.058 3.942 3 Si 0.914 3.086 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.268 1.268 7 C -0.375 4.375 8 H 0.093 0.907 9 N -0.378 5.378 10 C 0.509 3.491 11 O -0.548 6.548 12 C -0.095 4.095 13 S -0.187 6.187 14 C -0.073 4.073 15 C -0.056 4.056 16 C -0.090 4.090 17 C -0.110 4.110 18 C -0.035 4.035 19 Cl -0.076 7.076 20 C -0.110 4.110 21 C -0.090 4.090 22 C 0.183 3.817 23 C -0.105 4.105 24 C -0.124 4.124 25 C -0.172 4.172 26 C -0.120 4.120 27 C -0.191 4.191 28 H 0.277 0.723 29 H 0.102 0.898 30 H 0.111 0.889 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.136 0.864 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.135 0.865 37 H 0.131 0.869 38 H 0.105 0.895 39 H 0.101 0.899 40 H 0.106 0.894 41 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.196 -6.297 10.959 14.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.153 4.153 3 Si 0.739 3.261 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.193 1.193 7 C -0.502 4.502 8 H 0.110 0.890 9 N -0.086 5.086 10 C 0.300 3.700 11 O -0.431 6.431 12 C -0.246 4.246 13 S 0.042 5.958 14 C -0.221 4.221 15 C -0.058 4.058 16 C -0.110 4.110 17 C -0.129 4.129 18 C -0.063 4.063 19 Cl -0.047 7.047 20 C -0.129 4.129 21 C -0.110 4.110 22 C 0.087 3.913 23 C -0.125 4.125 24 C -0.143 4.143 25 C -0.191 4.191 26 C -0.139 4.139 27 C -0.210 4.210 28 H 0.087 0.913 29 H 0.120 0.880 30 H 0.130 0.870 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.153 0.847 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.153 0.847 37 H 0.149 0.851 38 H 0.123 0.877 39 H 0.119 0.881 40 H 0.124 0.876 41 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 5.253 -7.672 10.861 14.298 hybrid contribution 0.871 2.315 0.178 2.480 sum 6.123 -5.357 11.039 13.713 Atomic orbital electron populations 1.70023 1.06113 1.28995 1.41750 1.25625 0.95303 1.00201 0.94154 0.86205 0.79505 0.80785 0.79622 1.19218 1.20441 1.19261 1.19280 0.92235 0.82516 1.56182 0.88955 1.40831 1.39761 1.13533 1.14486 1.19944 0.81474 0.84579 0.84042 1.90235 1.49551 1.26138 1.77186 1.23306 1.04647 0.99437 0.97167 1.87527 1.69162 1.25665 1.13479 1.22414 1.03852 0.99149 0.96669 1.19358 0.95424 0.95792 0.95187 1.21068 0.97745 0.98224 0.93950 1.21029 0.98297 0.93544 0.99998 1.20952 0.98625 0.92112 0.94570 1.98366 1.98258 1.49293 1.58825 1.21017 0.98026 0.99329 0.94543 1.21042 0.98875 0.93072 0.98033 1.18245 0.93065 0.93188 0.86828 1.21017 0.99658 0.98805 0.93046 1.20775 0.99246 0.96641 0.97615 1.20810 1.03609 0.94372 1.00293 1.20875 0.99668 0.97912 0.95402 1.22788 0.99420 0.99252 0.99563 0.91264 0.87974 0.87030 0.89076 0.89001 0.84650 0.84827 0.84847 0.84699 0.85099 0.87718 0.88104 0.87627 0.80834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -20.91 11.39 55.49 0.63 -20.28 16 2 C 0.06 1.34 3.49 -17.49 -0.06 1.27 16 3 Si 0.91 17.70 29.57 -169.99 -5.03 12.67 16 4 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 5 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 6 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 7 C -0.37 -8.75 7.61 -14.94 -0.11 -8.87 16 8 H 0.09 2.02 7.85 -52.48 -0.41 1.61 16 9 N -0.38 -9.19 2.62 -58.98 -0.15 -9.34 16 10 C 0.51 11.68 7.59 -10.99 -0.08 11.60 16 11 O -0.55 -13.40 12.27 5.56 0.07 -13.33 16 12 C -0.09 -1.74 5.25 36.01 0.19 -1.55 16 13 S -0.19 -3.09 20.86 -107.50 -2.24 -5.33 16 14 C -0.07 -0.86 6.07 36.00 0.22 -0.64 16 15 C -0.06 -0.63 5.14 -104.62 -0.54 -1.16 16 16 C -0.09 -0.94 9.70 -39.58 -0.38 -1.33 16 17 C -0.11 -1.09 9.83 -39.54 -0.39 -1.48 16 18 C -0.04 -0.36 6.32 -39.49 -0.25 -0.61 16 19 Cl -0.08 -0.72 28.96 -51.86 -1.50 -2.22 16 20 C -0.11 -1.08 9.83 -39.55 -0.39 -1.46 16 21 C -0.09 -0.92 9.70 -39.59 -0.38 -1.31 16 22 C 0.18 4.54 6.05 -83.69 -0.51 4.03 16 23 C -0.10 -2.46 7.87 -39.37 -0.31 -2.77 16 24 C -0.12 -2.57 10.04 -39.61 -0.40 -2.97 16 25 C -0.17 -3.38 10.04 -39.53 -0.40 -3.78 16 26 C -0.12 -2.48 10.04 -39.61 -0.40 -2.88 16 27 C -0.19 -4.51 9.06 -39.37 -0.36 -4.86 16 28 H 0.28 6.57 8.32 -40.82 -0.34 6.23 16 29 H 0.10 1.68 8.14 -51.92 -0.42 1.25 16 30 H 0.11 2.05 8.04 -51.92 -0.42 1.63 16 31 H 0.09 0.94 8.09 -51.93 -0.42 0.52 16 32 H 0.09 0.99 8.08 -51.93 -0.42 0.57 16 33 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 34 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 36 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 37 H 0.13 3.16 5.15 -52.49 -0.27 2.89 16 38 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 39 H 0.10 1.67 8.06 -52.49 -0.42 1.24 16 40 H 0.11 1.89 8.06 -52.49 -0.42 1.47 16 41 H 0.18 4.28 4.50 -56.37 -0.25 4.02 16 LS Contribution 375.19 15.07 5.65 5.65 Total: -1.00 -27.79 375.19 -11.83 -39.62 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -4.71 Total: 11.33 kcal Atomic # 6 Polarization: -14.22 SS G_CDS: -4.55 Total: -18.77 kcal Atomic # 7 Polarization: -30.10 SS G_CDS: 0.48 Total: -29.62 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: 0.07 Total: -13.33 kcal Atomic # 14 Polarization: 17.70 SS G_CDS: -5.03 Total: 12.67 kcal Atomic # 16 Polarization: -3.09 SS G_CDS: -2.24 Total: -5.33 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.50 Total: -2.22 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -27.79 -11.83 -39.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021325779.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.416 kcal (2) G-P(sol) polarization free energy of solvation -27.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds