Wall clock time and date at job start Tue Mar 31 2020 05:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34705 * 116.99920 * 2 1 4 4 O 1.21463 * 120.00239 * 0.02562 * 3 2 1 5 5 C 1.47768 * 120.00262 * 180.02562 * 3 2 1 6 6 C 1.39445 * 119.99735 * 0.02562 * 5 3 2 7 7 C 1.39431 * 119.99537 * 179.97438 * 6 5 3 8 8 C 1.47765 * 120.00076 * 180.02562 * 7 6 5 9 9 O 1.21472 * 120.00084 * 179.97438 * 8 7 6 10 10 O 1.34702 * 120.00042 * 359.97438 * 8 7 6 11 11 C 1.45201 * 117.00265 * 180.02562 * 10 8 7 12 12 C 1.39488 * 120.00182 * 0.02562 * 7 6 5 13 13 C 1.39425 * 119.99882 * 359.97438 * 12 7 6 14 14 C 1.47837 * 119.99930 * 179.72182 * 13 12 7 15 15 C 1.35933 * 125.93138 * 180.02562 * 14 13 12 16 16 C 1.40936 * 106.74189 * 179.97438 * 15 14 13 17 17 C 1.34733 * 107.03034 * 359.97438 * 16 15 14 18 18 C 1.50697 * 125.66819 * 180.02562 * 17 16 15 19 19 N 1.46503 * 109.47348 * 89.99782 * 18 17 16 20 20 C 1.36937 * 120.00055 * 180.02562 * 19 18 17 21 21 H 1.07995 * 120.00265 * 359.97438 * 20 19 18 22 22 C 1.38813 * 119.99848 * 180.02562 * 20 19 18 23 23 N 1.31625 * 119.99880 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00184 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46957 * 59.99873 * 24 22 20 26 26 H 1.48494 * 109.47373 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.47409 * 300.00105 * 24 22 20 28 28 O 1.34312 * 108.66748 * 359.77479 * 17 16 15 29 29 C 1.39428 * 120.00504 * 0.02562 * 13 12 7 30 30 H 1.08994 * 109.47542 * 59.99532 * 1 2 3 31 31 H 1.08996 * 109.46845 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46967 * 299.99675 * 1 2 3 33 33 H 1.07999 * 120.00328 * 0.02562 * 6 5 3 34 34 H 1.08997 * 109.47452 * 180.02562 * 11 10 8 35 35 H 1.09002 * 109.46714 * 299.99716 * 11 10 8 36 36 H 1.09000 * 109.47394 * 59.99910 * 11 10 8 37 37 H 1.08000 * 120.00568 * 180.02562 * 12 7 6 38 38 H 1.07999 * 126.62855 * 359.97438 * 15 14 13 39 39 H 1.08000 * 126.48618 * 180.02562 * 16 15 14 40 40 H 1.08997 * 109.47330 * 210.00212 * 18 17 16 41 41 H 1.09005 * 109.47107 * 330.00228 * 18 17 16 42 42 H 0.97000 * 119.99707 * 0.02562 * 19 18 17 43 43 H 0.97006 * 119.99734 * 179.97438 * 23 22 20 44 44 H 1.08001 * 120.00206 * 179.97438 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2002 0.0000 4 8 1.4020 2.2189 0.0005 5 6 3.5392 1.2777 -0.0006 6 6 4.2987 0.1082 -0.0017 7 6 5.6911 0.1813 -0.0027 8 6 6.4960 -1.0579 -0.0044 9 8 7.7090 -0.9942 -0.0059 10 8 5.8846 -2.2582 -0.0044 11 6 6.7381 -3.4328 -0.0056 12 6 6.3242 1.4242 -0.0022 13 6 5.5648 2.5934 -0.0011 14 6 6.2358 3.9107 0.0057 15 6 5.6172 5.1211 0.0079 16 6 6.6341 6.0968 0.0152 17 6 7.8108 5.4404 0.0177 18 6 9.1746 6.0815 0.0258 19 7 9.6108 6.2841 1.4096 20 6 10.8279 6.8564 1.6670 21 1 11.4665 7.1580 0.8500 22 6 11.2414 7.0478 2.9782 23 7 10.4633 6.6798 3.9741 24 14 12.9020 7.8278 3.3295 25 1 12.9446 9.1890 2.7374 26 1 13.1047 7.9205 4.7976 27 1 13.9765 6.9945 2.7326 28 8 7.5663 4.1197 0.0172 29 6 4.1724 2.5205 0.0000 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 3.8084 -0.8541 -0.0025 34 1 6.1204 -4.3308 -0.0059 35 1 7.3666 -3.4243 -0.8961 36 1 7.3681 -3.4251 0.8839 37 1 7.4028 1.4809 -0.0034 38 1 4.5522 5.3004 0.0047 39 1 6.4964 7.1680 0.0191 40 1 9.8841 5.4326 -0.4876 41 1 9.1269 7.0435 -0.4846 42 1 9.0374 6.0128 2.1435 43 1 10.7525 6.8132 4.8904 44 1 3.5842 3.4262 0.0012 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000022108625.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:58 Heat of formation + Delta-G solvation = -108.090604 kcal Electronic energy + Delta-G solvation = -30258.878898 eV Core-core repulsion = 25723.159877 eV Total energy + Delta-G solvation = -4535.719021 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 359.129 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.37226 -41.12253 -40.62861 -38.96191 -36.86603 -36.69610 -34.91948 -33.36219 -32.65661 -32.10496 -31.25608 -28.76175 -28.25528 -27.92032 -25.52541 -24.82958 -24.11383 -22.93053 -22.00233 -21.37855 -20.49625 -20.05287 -18.70310 -18.03667 -17.41768 -17.33530 -16.79381 -16.65552 -16.56488 -16.50857 -16.14501 -15.85938 -15.21863 -14.77050 -14.38099 -14.06587 -14.04185 -13.95330 -13.65217 -13.35878 -13.22540 -13.07728 -12.82512 -12.71913 -12.55086 -12.49160 -12.44231 -12.16008 -11.95821 -11.47139 -11.22445 -11.14198 -11.08760 -10.95891 -10.82030 -10.81179 -10.21048 -10.16228 -9.84390 -9.66450 -9.51423 -8.96346 -7.83416 -7.03365 -5.80627 -3.12603 0.07141 0.21152 1.48129 2.14559 2.26808 2.27668 2.36362 2.84270 2.96984 3.41886 3.43165 3.47268 3.48634 4.02639 4.25197 4.32391 4.57195 4.62032 4.62645 4.71106 4.74268 4.78871 4.79395 4.87489 4.97189 5.07497 5.15890 5.18476 5.22780 5.28573 5.51621 5.59881 5.64748 5.72265 5.89335 5.94691 6.00675 6.01024 6.06316 6.11728 6.22689 6.40283 6.41648 6.74627 7.28438 7.37257 7.41502 7.63751 8.35257 9.47522 9.98934 10.35209 11.41492 Molecular weight = 359.13amu Principal moments of inertia in cm(-1) A = 0.010225 B = 0.002221 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2737.793253 B =12604.126210 C =14568.853186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.353 6.353 3 C 0.515 3.485 4 O -0.499 6.499 5 C -0.133 4.133 6 C -0.010 4.010 7 C -0.131 4.131 8 C 0.511 3.489 9 O -0.493 6.493 10 O -0.354 6.354 11 C 0.037 3.963 12 C -0.008 4.008 13 C -0.011 4.011 14 C -0.007 4.007 15 C -0.169 4.169 16 C -0.208 4.208 17 C 0.030 3.970 18 C 0.223 3.777 19 N -0.727 5.727 20 C -0.248 4.248 21 H 0.074 0.926 22 C -0.010 4.010 23 N -0.930 5.930 24 Si 0.912 3.088 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.284 1.284 28 O -0.161 6.161 29 C -0.007 4.007 30 H 0.065 0.935 31 H 0.104 0.896 32 H 0.065 0.935 33 H 0.157 0.843 34 H 0.104 0.896 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.155 0.845 38 H 0.150 0.850 39 H 0.153 0.847 40 H 0.040 0.960 41 H 0.057 0.943 42 H 0.388 0.612 43 H 0.257 0.743 44 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.142 -19.114 -10.982 29.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.270 6.270 3 C 0.359 3.641 4 O -0.388 6.388 5 C -0.134 4.134 6 C -0.028 4.028 7 C -0.132 4.132 8 C 0.355 3.645 9 O -0.381 6.381 10 O -0.271 6.271 11 C -0.057 4.057 12 C -0.026 4.026 13 C -0.011 4.011 14 C -0.057 4.057 15 C -0.188 4.188 16 C -0.228 4.228 17 C -0.021 4.021 18 C 0.096 3.904 19 N -0.373 5.373 20 C -0.378 4.378 21 H 0.092 0.908 22 C -0.206 4.206 23 N -0.577 5.577 24 Si 0.743 3.257 25 H -0.211 1.211 26 H -0.216 1.216 27 H -0.211 1.211 28 O -0.057 6.057 29 C -0.026 4.026 30 H 0.084 0.916 31 H 0.123 0.877 32 H 0.084 0.916 33 H 0.174 0.826 34 H 0.122 0.878 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.172 0.828 38 H 0.168 0.832 39 H 0.171 0.829 40 H 0.058 0.942 41 H 0.074 0.926 42 H 0.222 0.778 43 H 0.067 0.933 44 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -19.614 -19.010 -10.986 29.442 hybrid contribution 0.527 0.386 0.606 0.891 sum -19.087 -18.625 -10.380 28.617 Atomic orbital electron populations 1.23332 0.75457 1.04009 1.02875 1.86533 1.23931 1.32241 1.84249 1.20925 0.88604 0.81701 0.72852 1.90867 1.66535 1.35934 1.45420 1.18761 0.89538 0.94024 1.11074 1.21788 0.92135 0.99004 0.89866 1.18872 0.92926 0.90847 1.10544 1.20962 0.86492 0.83929 0.73142 1.90905 1.14691 1.87638 1.44852 1.86517 1.41258 1.14949 1.84376 1.23330 0.95152 0.84244 1.02965 1.21729 1.02038 0.89442 0.89359 1.17418 0.91523 0.89211 1.02937 1.19857 0.81373 0.93080 1.11403 1.21768 1.00431 0.91021 1.05622 1.21546 0.91026 1.00858 1.09385 1.23275 0.98664 0.79094 1.01091 1.19303 0.84801 0.95897 0.90351 1.42344 1.20526 1.74467 0.99965 1.19160 0.93889 1.32836 0.91959 0.90799 1.24795 0.98743 1.01608 0.95489 1.69676 1.37160 1.52440 0.98425 0.86197 0.83457 0.79112 0.76961 1.21092 1.21616 1.21096 1.84054 1.23575 1.27032 1.71016 1.21367 0.92701 0.97656 0.90837 0.91622 0.87738 0.91588 0.82564 0.87779 0.91624 0.91541 0.82757 0.83211 0.82926 0.94245 0.92565 0.77797 0.93269 0.82978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.20 10.56 101.05 1.07 1.27 16 2 O -0.35 -2.91 9.80 -40.51 -0.40 -3.31 16 3 C 0.51 5.24 7.90 34.63 0.27 5.52 16 4 O -0.50 -6.19 16.12 -19.24 -0.31 -6.50 16 5 C -0.13 -1.33 5.86 -105.09 -0.62 -1.94 16 6 C -0.01 -0.09 9.17 -38.69 -0.35 -0.44 16 7 C -0.13 -1.44 5.86 -105.09 -0.62 -2.05 16 8 C 0.51 5.95 7.90 34.63 0.27 6.22 16 9 O -0.49 -7.21 16.12 -19.24 -0.31 -7.52 16 10 O -0.35 -3.28 9.80 -40.50 -0.40 -3.67 16 11 C 0.04 0.24 10.56 101.05 1.07 1.31 16 12 C -0.01 -0.09 9.26 -38.67 -0.36 -0.45 16 13 C -0.01 -0.14 5.86 -105.09 -0.62 -0.75 16 14 C -0.01 -0.11 7.03 -36.48 -0.26 -0.37 16 15 C -0.17 -2.44 10.26 -39.39 -0.40 -2.84 16 16 C -0.21 -3.39 10.78 -39.80 -0.43 -3.82 16 17 C 0.03 0.56 6.68 -35.55 -0.24 0.32 16 18 C 0.22 4.57 6.79 -5.19 -0.04 4.54 16 19 N -0.73 -18.76 5.59 -61.09 -0.34 -19.11 16 20 C -0.25 -6.93 9.99 -15.06 -0.15 -7.08 16 21 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 22 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 23 N -0.93 -28.40 13.06 55.49 0.72 -27.68 16 24 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 25 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 28 O -0.16 -2.92 10.39 4.64 0.05 -2.88 16 29 C -0.01 -0.08 9.10 -38.67 -0.35 -0.43 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.16 1.13 7.12 -52.49 -0.37 0.76 16 34 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.15 2.13 7.47 -52.49 -0.39 1.74 16 38 H 0.15 1.69 7.25 -52.49 -0.38 1.31 16 39 H 0.15 2.25 8.06 -52.49 -0.42 1.83 16 40 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.39 10.75 7.66 -40.82 -0.31 10.43 16 43 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 44 H 0.15 1.53 6.54 -52.49 -0.34 1.18 16 LS Contribution 396.17 15.07 5.97 5.97 Total: -1.00 -34.59 396.17 -7.03 -41.62 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -5.15 Total: 7.14 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: -1.84 Total: -1.40 kcal Atomic # 7 Polarization: -47.17 SS G_CDS: 0.38 Total: -46.78 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -1.37 Total: -23.89 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.59 -7.03 -41.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000022108625.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.475 kcal (2) G-P(sol) polarization free energy of solvation -34.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds