Wall clock time and date at job start Tue Mar 31 2020 05:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46504 * 119.99626 * 2 1 4 4 C 1.50700 * 109.46705 * 269.99585 * 3 2 1 5 5 H 1.07997 * 120.00362 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99305 * 180.02562 * 4 3 2 7 7 N 1.31513 * 120.00716 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99430 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47284 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46792 * 120.00390 * 8 6 4 11 11 H 1.48496 * 109.47273 * 239.99878 * 8 6 4 12 12 C 1.34771 * 120.00076 * 179.97438 * 2 1 3 13 13 O 1.21553 * 120.00147 * 184.85437 * 12 2 1 14 14 C 1.47855 * 120.00098 * 4.85135 * 12 2 1 15 15 C 1.39611 * 120.12065 * 320.74055 * 14 12 2 16 16 C 1.37956 * 119.96923 * 180.02562 * 15 14 12 17 17 C 1.38295 * 120.20275 * 359.72922 * 16 15 14 18 18 C 1.38808 * 120.23880 * 0.55022 * 17 16 15 19 19 O 1.35909 * 119.98152 * 179.72387 * 18 17 16 20 20 C 1.42903 * 117.00412 * 359.72972 * 19 18 17 21 21 C 1.50695 * 109.47416 * 180.02562 * 20 19 18 22 22 C 1.38239 * 120.00606 * 359.97438 * 21 20 19 23 23 C 1.38214 * 120.01211 * 180.02562 * 22 21 20 24 24 C 1.38264 * 120.02853 * 359.95548 * 23 22 21 25 25 C 1.38185 * 120.01437 * 0.02562 * 24 23 22 26 26 C 1.38331 * 120.00813 * 179.97438 * 21 20 19 27 27 Cl 1.73600 * 120.01225 * 359.97438 * 26 21 20 28 28 C 1.38489 * 120.02981 * 359.44828 * 18 17 16 29 29 H 1.08996 * 109.47263 * 265.67367 * 1 2 3 30 30 H 1.09000 * 109.46920 * 25.67965 * 1 2 3 31 31 H 1.09004 * 109.46768 * 145.67590 * 1 2 3 32 32 H 1.09000 * 109.46983 * 29.99579 * 3 2 1 33 33 H 1.08997 * 109.46678 * 149.99861 * 3 2 1 34 34 H 0.96994 * 120.00173 * 179.97438 * 7 6 4 35 35 H 1.08008 * 120.01216 * 0.02562 * 15 14 12 36 36 H 1.08000 * 119.89638 * 180.02562 * 16 15 14 37 37 H 1.08004 * 119.88023 * 180.29326 * 17 16 15 38 38 H 1.08998 * 109.47094 * 59.99120 * 20 19 18 39 39 H 1.09004 * 109.46503 * 300.00080 * 20 19 18 40 40 H 1.08000 * 119.99031 * 0.02562 * 22 21 20 41 41 H 1.08008 * 119.98902 * 179.97438 * 23 22 21 42 42 H 1.08004 * 119.99388 * 180.02562 * 24 23 22 43 43 H 1.08001 * 120.01176 * 179.72071 * 25 24 23 44 44 H 1.08004 * 120.10381 * 180.25482 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1269 2.8775 -1.6727 7 7 3.5550 3.6172 -0.6732 8 14 3.4389 3.4162 -3.4340 9 1 2.8609 2.4163 -4.3673 10 1 2.8018 4.7371 -3.6677 11 1 4.9015 3.5240 -3.6669 12 6 2.1389 -1.1671 0.0005 13 8 3.3512 -1.1690 0.0896 14 6 1.4037 -2.4454 -0.1072 15 6 0.1910 -2.6147 0.5635 16 6 -0.4922 -3.8089 0.4612 17 6 0.0177 -4.8384 -0.3087 18 6 1.2255 -4.6813 -0.9745 19 8 1.7244 -5.6984 -1.7252 20 6 0.9562 -6.9022 -1.7796 21 6 1.6611 -7.9091 -2.6514 22 6 2.8648 -7.5841 -3.2485 23 6 3.5111 -8.5073 -4.0486 24 6 2.9548 -9.7567 -4.2517 25 6 1.7518 -10.0829 -3.6551 26 6 1.1038 -9.1588 -2.8545 27 17 -0.4074 -9.5679 -2.1045 28 6 1.9194 -3.4867 -0.8787 29 1 -0.3633 -0.0775 1.0247 30 1 -0.3633 0.9262 -0.4453 31 1 -0.3633 -0.8488 -0.5795 32 1 1.6083 2.0284 0.5138 33 1 3.1499 1.1385 0.5139 34 1 4.0324 4.4427 -0.8505 35 1 -0.2121 -1.8112 1.1621 36 1 -1.4304 -3.9385 0.9802 37 1 -0.5239 -5.7694 -0.3889 38 1 -0.0280 -6.6866 -2.1954 39 1 0.8448 -7.3077 -0.7739 40 1 3.3002 -6.6086 -3.0897 41 1 4.4514 -8.2529 -4.5153 42 1 3.4605 -10.4779 -4.8767 43 1 1.3150 -11.0573 -3.8173 44 1 2.8573 -3.3617 -1.3996 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000022258585.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:18 Heat of formation + Delta-G solvation = -15.979422 kcal Electronic energy + Delta-G solvation = -27920.862922 eV Core-core repulsion = 23829.847306 eV Total energy + Delta-G solvation = -4091.015616 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 359.108 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.59816 -39.78040 -38.89008 -37.00455 -36.88186 -34.92655 -32.84000 -32.59021 -31.18978 -31.07820 -30.03069 -27.65600 -27.03066 -25.99886 -23.98316 -23.29038 -22.41237 -22.24872 -21.46754 -19.36181 -17.85506 -17.57606 -16.54877 -16.38061 -16.35540 -16.28597 -15.92285 -15.42603 -15.27689 -15.12511 -14.40867 -14.33845 -14.21721 -13.99695 -13.75332 -13.67835 -13.07320 -12.84427 -12.70130 -12.45046 -12.17135 -12.10565 -12.07510 -11.96036 -11.78355 -11.39973 -11.32308 -11.23578 -11.08377 -10.96713 -10.86520 -10.58179 -10.17160 -9.63484 -9.33082 -9.14150 -9.12288 -8.88256 -8.44652 -8.25537 -7.67981 -6.05235 -4.10205 0.66145 0.82458 1.05173 1.40827 1.64456 2.77529 3.16841 3.29863 3.30885 3.37696 3.42235 3.80665 4.07072 4.16367 4.41807 4.44698 4.55283 4.66537 4.79661 4.83389 4.88238 4.88797 4.99939 5.04572 5.21342 5.22614 5.29221 5.39343 5.49852 5.52779 5.69978 5.74419 5.86495 5.88617 5.97455 6.00474 6.18783 6.21626 6.33437 6.35381 6.46824 6.59031 7.04657 7.25455 7.42465 7.50619 7.91182 8.21383 8.34587 8.86628 9.02612 9.54975 11.02856 Molecular weight = 359.11amu Principal moments of inertia in cm(-1) A = 0.013758 B = 0.002047 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.681364 B =13673.534982 C =15070.515339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.592 5.592 3 C 0.243 3.757 4 C -0.527 4.527 5 H 0.058 0.942 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.546 3.454 13 O -0.533 6.533 14 C -0.074 4.074 15 C -0.132 4.132 16 C -0.089 4.089 17 C -0.197 4.197 18 C 0.121 3.879 19 O -0.310 6.310 20 C 0.102 3.898 21 C -0.081 4.081 22 C -0.084 4.084 23 C -0.113 4.113 24 C -0.108 4.108 25 C -0.110 4.110 26 C -0.031 4.031 27 Cl -0.068 7.068 28 C -0.098 4.098 29 H 0.047 0.953 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.035 0.965 33 H 0.047 0.953 34 H 0.263 0.737 35 H 0.139 0.861 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.145 0.855 41 H 0.133 0.867 42 H 0.133 0.867 43 H 0.135 0.865 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.741 -27.840 -2.925 29.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.323 5.323 3 C 0.124 3.876 4 C -0.566 4.566 5 H 0.077 0.923 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.332 3.668 13 O -0.411 6.411 14 C -0.077 4.077 15 C -0.151 4.151 16 C -0.107 4.107 17 C -0.216 4.216 18 C 0.076 3.924 19 O -0.224 6.224 20 C 0.027 3.973 21 C -0.082 4.082 22 C -0.102 4.102 23 C -0.131 4.131 24 C -0.126 4.126 25 C -0.129 4.129 26 C -0.058 4.058 27 Cl -0.039 7.039 28 C -0.118 4.118 29 H 0.066 0.934 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.156 0.844 36 H 0.147 0.853 37 H 0.145 0.855 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.163 0.837 41 H 0.151 0.849 42 H 0.151 0.849 43 H 0.153 0.847 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -8.965 -27.663 -2.876 29.222 hybrid contribution -0.267 0.220 -0.849 0.917 sum -9.231 -27.443 -3.725 29.193 Atomic orbital electron populations 1.21987 0.81441 1.03220 1.00018 1.48070 1.06306 1.07541 1.70422 1.19375 0.92756 0.77718 0.97703 1.21471 1.36553 1.06373 0.92224 0.92327 1.24942 0.95315 0.96361 0.97509 1.69940 1.38301 1.14362 1.30680 0.86432 0.78104 0.78319 0.84525 1.19756 1.20943 1.20832 1.18115 0.87149 0.83290 0.78236 1.90764 1.13440 1.86983 1.49923 1.20024 0.95088 0.94772 0.97823 1.21627 0.94331 0.98370 1.00753 1.20845 0.99649 0.92414 0.97771 1.21310 0.96751 1.01037 1.02476 1.18705 0.92991 0.87966 0.92725 1.85993 1.48224 1.21887 1.66267 1.21433 0.93971 0.82638 0.99271 1.19414 0.96407 0.92775 0.99608 1.21130 0.93375 1.00628 0.95054 1.21365 1.00306 0.93439 0.97982 1.21193 0.95032 0.97064 0.99313 1.21002 0.95681 0.99145 0.97044 1.20619 0.89843 0.94803 1.00526 1.98379 1.30917 1.93634 1.81015 1.20410 1.00813 0.89789 1.00739 0.93438 0.90635 0.91700 0.94702 0.93506 0.92728 0.84383 0.85349 0.85512 0.90105 0.90127 0.83714 0.84947 0.84920 0.84682 0.84271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.24 8.88 59.85 0.53 1.77 16 2 N -0.59 -12.85 2.86 -184.07 -0.53 -13.38 16 3 C 0.24 6.41 5.18 -5.19 -0.03 6.39 16 4 C -0.53 -15.03 9.39 -34.44 -0.32 -15.36 16 5 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 7 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 8 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 9 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 12 C 0.55 11.97 7.35 -12.33 -0.09 11.87 16 13 O -0.53 -13.94 16.47 5.32 0.09 -13.85 16 14 C -0.07 -1.26 5.23 -104.99 -0.55 -1.81 16 15 C -0.13 -1.78 7.56 -39.17 -0.30 -2.07 16 16 C -0.09 -0.97 10.03 -39.66 -0.40 -1.37 16 17 C -0.20 -2.20 9.03 -39.35 -0.36 -2.56 16 18 C 0.12 1.62 6.68 -39.28 -0.26 1.36 16 19 O -0.31 -3.80 8.61 -19.46 -0.17 -3.97 16 20 C 0.10 0.97 4.10 36.00 0.15 1.12 16 21 C -0.08 -0.76 5.88 -104.59 -0.62 -1.38 16 22 C -0.08 -0.78 9.38 -39.59 -0.37 -1.15 16 23 C -0.11 -0.84 10.05 -39.58 -0.40 -1.24 16 24 C -0.11 -0.70 10.04 -39.59 -0.40 -1.10 16 25 C -0.11 -0.78 9.83 -39.55 -0.39 -1.17 16 26 C -0.03 -0.26 6.31 -39.50 -0.25 -0.51 16 27 Cl -0.07 -0.53 27.99 -51.86 -1.45 -1.98 16 28 C -0.10 -1.59 9.57 -39.02 -0.37 -1.96 16 29 H 0.05 0.63 6.90 -51.93 -0.36 0.27 16 30 H 0.07 1.23 8.04 -51.93 -0.42 0.82 16 31 H 0.06 0.92 5.81 -51.93 -0.30 0.62 16 32 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 33 H 0.05 1.39 7.36 -51.93 -0.38 1.00 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.14 1.66 5.31 -52.48 -0.28 1.38 16 36 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 37 H 0.13 1.08 6.28 -52.48 -0.33 0.75 16 38 H 0.08 0.70 7.64 -51.93 -0.40 0.30 16 39 H 0.08 0.69 7.67 -51.93 -0.40 0.30 16 40 H 0.15 1.41 7.01 -52.49 -0.37 1.05 16 41 H 0.13 0.73 8.06 -52.48 -0.42 0.31 16 42 H 0.13 0.53 8.06 -52.48 -0.42 0.11 16 43 H 0.14 0.70 8.06 -52.49 -0.42 0.27 16 44 H 0.14 2.38 8.05 -52.48 -0.42 1.96 16 LS Contribution 386.50 15.07 5.82 5.82 Total: -1.00 -33.95 386.50 -10.34 -44.29 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -5.31 Total: -0.48 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: -4.51 Total: -7.52 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: 0.21 Total: -39.23 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -0.08 Total: -17.82 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.45 Total: -1.98 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.95 -10.34 -44.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000022258585.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.314 kcal (2) G-P(sol) polarization free energy of solvation -33.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds