Wall clock time and date at job start Tue Mar 31 2020 07:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31573 * 1 3 3 Si 1.86801 * 119.99634 * 2 1 4 4 H 1.48492 * 109.47249 * 269.99418 * 3 2 1 5 5 H 1.48504 * 109.47326 * 30.00086 * 3 2 1 6 6 H 1.48503 * 109.46687 * 149.99605 * 3 2 1 7 7 C 1.38632 * 120.00051 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99747 * 180.02562 * 7 2 1 9 9 O 1.34811 * 120.00135 * 359.97438 * 7 2 1 10 10 C 1.35778 * 116.99962 * 174.96526 * 9 7 2 11 11 C 1.38912 * 119.99695 * 5.34933 * 10 9 7 12 12 C 1.37993 * 120.00304 * 180.02562 * 11 10 9 13 13 C 1.38939 * 119.99613 * 0.02562 * 12 11 10 14 14 N 1.39918 * 120.00344 * 180.02562 * 13 12 11 15 15 C 1.34773 * 120.00043 * 35.13783 * 14 13 12 16 16 O 1.21582 * 119.99817 * 355.47843 * 15 14 13 17 17 C 1.47746 * 120.00230 * 175.48415 * 15 14 13 18 18 C 1.39637 * 120.15433 * 359.95301 * 17 15 14 19 19 C 1.37906 * 119.86339 * 180.02562 * 18 17 15 20 20 C 1.38413 * 120.17457 * 0.02562 * 19 18 17 21 21 C 1.38287 * 120.31584 * 0.02562 * 20 19 18 22 22 C 1.38114 * 120.13381 * 359.95340 * 21 20 19 23 23 Br 1.89100 * 120.09010 * 180.02562 * 22 21 20 24 24 C 1.38943 * 119.99593 * 0.27105 * 13 12 11 25 25 C 1.37999 * 119.98966 * 359.47331 * 24 13 12 26 26 H 0.96995 * 120.00384 * 0.02562 * 1 2 3 27 27 H 1.07996 * 119.99552 * 359.97438 * 11 10 9 28 28 H 1.08001 * 120.00264 * 179.97438 * 12 11 10 29 29 H 0.96999 * 120.00086 * 215.13338 * 14 13 12 30 30 H 1.08003 * 120.06748 * 0.04618 * 18 17 15 31 31 H 1.07994 * 119.91020 * 180.29254 * 19 18 17 32 32 H 1.08000 * 119.84662 * 180.02562 * 20 19 18 33 33 H 1.07999 * 119.93496 * 179.97438 * 21 20 19 34 34 H 1.07993 * 120.00704 * 179.72595 * 24 13 12 35 35 H 1.08005 * 119.99380 * 180.22990 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4972 2.0464 -1.4000 5 1 1.4470 2.6527 0.7001 6 1 3.5472 1.4402 0.7002 7 6 2.0089 -1.2006 0.0005 8 1 3.0889 -1.2005 0.0010 9 8 1.3349 -2.3681 0.0016 10 6 2.0703 -3.5045 -0.1041 11 6 3.4578 -3.4372 -0.0950 12 6 4.2054 -4.5921 -0.2029 13 6 3.5703 -5.8222 -0.3213 14 7 4.3281 -6.9933 -0.4302 15 6 5.4936 -7.1062 0.2371 16 8 5.9273 -6.1613 0.8674 17 6 6.2445 -8.3782 0.2025 18 6 5.7490 -9.4658 -0.5197 19 6 6.4545 -10.6504 -0.5475 20 6 7.6512 -10.7637 0.1388 21 6 8.1481 -9.6916 0.8572 22 6 7.4524 -8.4991 0.8935 23 35 8.1333 -7.0337 1.8757 24 6 2.1825 -5.8888 -0.3366 25 6 1.4352 -4.7342 -0.2233 26 1 -0.4850 0.8400 -0.0004 27 1 3.9514 -2.4810 -0.0043 28 1 5.2841 -4.5397 -0.1963 29 1 4.0147 -7.7239 -0.9859 30 1 4.8154 -9.3792 -1.0557 31 1 6.0744 -11.4905 -1.1096 32 1 8.1995 -11.6938 0.1131 33 1 9.0822 -9.7870 1.3908 34 1 1.6887 -6.8443 -0.4330 35 1 0.3565 -4.7863 -0.2315 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000023150434.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:20 Heat of formation + Delta-G solvation = 16.818309 kcal Electronic energy + Delta-G solvation = -22283.764536 eV Core-core repulsion = 18680.765783 eV Total energy + Delta-G solvation = -3602.998753 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 361.010 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.59262 -39.18472 -38.32511 -36.45916 -34.14756 -32.51515 -32.25399 -31.60613 -30.19013 -29.48352 -27.87681 -25.35315 -24.20165 -22.83073 -22.29226 -21.38381 -20.16789 -18.58183 -17.88414 -17.15860 -16.54069 -16.19575 -15.50647 -15.14872 -15.11044 -14.49965 -14.22026 -14.03987 -13.89463 -13.57008 -13.54682 -13.22216 -12.87605 -12.55516 -12.13528 -11.73786 -11.66201 -11.60162 -11.50348 -11.05514 -10.98155 -10.86586 -10.59726 -10.41597 -9.67460 -9.46630 -9.28124 -9.03465 -8.86027 -8.67320 -8.18492 -6.92872 -6.43468 -4.00806 0.37639 0.74123 1.50773 2.12999 2.24412 2.77545 3.14768 3.16491 3.18907 3.21468 3.50320 3.99218 4.28467 4.37223 4.50247 4.60124 4.82841 4.90208 5.09780 5.11782 5.26746 5.33003 5.65326 5.68631 5.71897 5.77940 5.89449 6.13951 6.18077 6.26892 6.35078 6.73207 6.86178 7.01328 7.10060 7.31918 7.45251 7.66088 7.78256 8.01890 8.31931 9.02463 9.71727 10.74477 Molecular weight = 361.01amu Principal moments of inertia in cm(-1) A = 0.017997 B = 0.002538 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.438913 B =11029.713321 C =12393.614330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.039 3.961 3 Si 0.940 3.060 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.390 4.390 8 H 0.093 0.907 9 O -0.176 6.176 10 C 0.147 3.853 11 C -0.220 4.220 12 C -0.061 4.061 13 C 0.034 3.966 14 N -0.653 5.653 15 C 0.536 3.464 16 O -0.491 6.491 17 C -0.105 4.105 18 C -0.083 4.083 19 C -0.114 4.114 20 C -0.094 4.094 21 C -0.101 4.101 22 C -0.045 4.045 23 Br -0.007 7.007 24 C -0.092 4.092 25 C -0.178 4.178 26 H 0.270 0.730 27 H 0.130 0.870 28 H 0.127 0.873 29 H 0.398 0.602 30 H 0.135 0.865 31 H 0.135 0.865 32 H 0.135 0.865 33 H 0.138 0.862 34 H 0.114 0.886 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.857 -22.980 -0.792 27.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.466 4.466 8 H 0.110 0.890 9 O -0.080 6.080 10 C 0.093 3.907 11 C -0.240 4.240 12 C -0.081 4.081 13 C -0.059 4.059 14 N -0.298 5.298 15 C 0.322 3.678 16 O -0.366 6.366 17 C -0.110 4.110 18 C -0.103 4.103 19 C -0.133 4.133 20 C -0.113 4.113 21 C -0.121 4.121 22 C -0.127 4.127 23 Br 0.080 6.920 24 C -0.112 4.112 25 C -0.198 4.198 26 H 0.080 0.920 27 H 0.148 0.852 28 H 0.145 0.855 29 H 0.234 0.766 30 H 0.152 0.848 31 H 0.153 0.847 32 H 0.153 0.847 33 H 0.156 0.844 34 H 0.132 0.868 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 16.007 -21.507 0.094 26.810 hybrid contribution 0.129 -0.024 -0.526 0.542 sum 16.136 -21.530 -0.432 26.909 Atomic orbital electron populations 1.70042 1.05948 1.27668 1.46145 1.25282 0.95842 0.98828 0.96553 0.85716 0.79004 0.80056 0.78724 1.19869 1.20264 1.19118 1.21343 0.91873 0.80808 1.52592 0.88994 1.83971 1.34300 1.11422 1.78263 1.19417 0.90287 0.88120 0.92852 1.21108 0.93540 0.98797 1.10578 1.20868 0.99907 0.90235 0.97120 1.17207 0.89812 0.85086 1.13758 1.43083 1.21535 1.17668 1.47508 1.18168 0.81673 0.87708 0.80245 1.90977 1.66166 1.38714 1.40737 1.19831 0.95524 0.95278 1.00392 1.21362 0.99645 0.92144 0.97105 1.21235 0.95083 0.97699 0.99258 1.21369 0.95817 0.98499 0.95608 1.21156 1.00109 0.91309 0.99530 1.22077 0.96066 0.95010 0.99507 1.96839 1.83746 1.41563 1.69867 1.20345 0.91384 0.97454 1.02015 1.19979 0.99465 0.89842 1.10533 0.92034 0.85194 0.85546 0.76629 0.84760 0.84727 0.84720 0.84409 0.86780 0.86055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.44 13.67 55.48 0.76 -24.68 16 2 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 20.85 29.55 -169.99 -5.02 15.83 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 7 C -0.39 -11.03 9.48 30.88 0.29 -10.74 16 8 H 0.09 2.43 5.20 -52.49 -0.27 2.16 16 9 O -0.18 -5.06 9.75 0.02 0.00 -5.06 16 10 C 0.15 3.59 6.65 -39.08 -0.26 3.33 16 11 C -0.22 -5.01 9.16 -39.42 -0.36 -5.37 16 12 C -0.06 -1.24 8.68 -39.41 -0.34 -1.59 16 13 C 0.03 0.60 6.30 -83.65 -0.53 0.07 16 14 N -0.65 -9.03 5.28 -10.70 -0.06 -9.09 16 15 C 0.54 7.94 7.60 -12.38 -0.09 7.85 16 16 O -0.49 -8.89 10.91 5.29 0.06 -8.83 16 17 C -0.10 -1.22 5.88 -104.95 -0.62 -1.84 16 18 C -0.08 -0.67 9.54 -39.18 -0.37 -1.04 16 19 C -0.11 -0.71 10.03 -39.64 -0.40 -1.11 16 20 C -0.09 -0.59 10.04 -39.50 -0.40 -0.98 16 21 C -0.10 -0.84 9.78 -39.61 -0.39 -1.22 16 22 C -0.05 -0.52 6.26 -39.09 -0.24 -0.76 16 23 Br -0.01 -0.09 30.40 -68.01 -2.07 -2.16 16 24 C -0.09 -1.59 9.96 -39.41 -0.39 -1.99 16 25 C -0.18 -3.71 9.98 -39.42 -0.39 -4.10 16 26 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 27 H 0.13 2.99 5.63 -52.49 -0.30 2.69 16 28 H 0.13 2.54 6.23 -52.49 -0.33 2.21 16 29 H 0.40 3.95 6.87 -40.82 -0.28 3.66 16 30 H 0.13 0.76 6.42 -52.48 -0.34 0.42 16 31 H 0.13 0.46 8.06 -52.49 -0.42 0.04 16 32 H 0.13 0.46 8.06 -52.49 -0.42 0.03 16 33 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 35 H 0.12 2.39 8.06 -52.48 -0.42 1.97 16 LS Contribution 324.65 15.07 4.89 4.89 Total: -1.00 -33.52 324.65 -8.79 -42.31 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -2.76 Total: 5.31 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: -4.59 Total: -18.51 kcal Atomic # 7 Polarization: -34.48 SS G_CDS: 0.70 Total: -33.78 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: 0.06 Total: -13.89 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 35 Polarization: -0.09 SS G_CDS: -2.07 Total: -2.16 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.52 -8.79 -42.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023150434.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.125 kcal (2) G-P(sol) polarization free energy of solvation -33.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds