Wall clock time and date at job start Tue Mar 31 2020 07:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31573 * 1 3 3 Si 1.86801 * 119.99634 * 2 1 4 4 H 1.48492 * 109.47249 * 269.99418 * 3 2 1 5 5 H 1.48504 * 109.47326 * 30.00086 * 3 2 1 6 6 H 1.48503 * 109.46687 * 149.99605 * 3 2 1 7 7 C 1.38632 * 120.00051 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99747 * 180.02562 * 7 2 1 9 9 O 1.34811 * 120.00135 * 359.97438 * 7 2 1 10 10 C 1.35778 * 116.99962 * 174.96526 * 9 7 2 11 11 C 1.38912 * 119.99695 * 5.34933 * 10 9 7 12 12 C 1.37993 * 120.00304 * 180.02562 * 11 10 9 13 13 C 1.38939 * 119.99613 * 0.02562 * 12 11 10 14 14 N 1.39918 * 120.00344 * 180.02562 * 13 12 11 15 15 C 1.34773 * 120.00043 * 35.13783 * 14 13 12 16 16 O 1.21582 * 119.99817 * 355.47843 * 15 14 13 17 17 C 1.47746 * 120.00230 * 175.48415 * 15 14 13 18 18 C 1.39637 * 120.15433 * 359.95301 * 17 15 14 19 19 C 1.37906 * 119.86339 * 180.02562 * 18 17 15 20 20 C 1.38413 * 120.17457 * 0.02562 * 19 18 17 21 21 C 1.38287 * 120.31584 * 0.02562 * 20 19 18 22 22 C 1.38114 * 120.13381 * 359.95340 * 21 20 19 23 23 Br 1.89100 * 120.09010 * 180.02562 * 22 21 20 24 24 C 1.38943 * 119.99593 * 0.27105 * 13 12 11 25 25 C 1.37999 * 119.98966 * 359.47331 * 24 13 12 26 26 H 0.96995 * 120.00384 * 0.02562 * 1 2 3 27 27 H 1.07996 * 119.99552 * 359.97438 * 11 10 9 28 28 H 1.08001 * 120.00264 * 179.97438 * 12 11 10 29 29 H 0.96999 * 120.00086 * 215.13338 * 14 13 12 30 30 H 1.08003 * 120.06748 * 0.04618 * 18 17 15 31 31 H 1.07994 * 119.91020 * 180.29254 * 19 18 17 32 32 H 1.08000 * 119.84662 * 180.02562 * 20 19 18 33 33 H 1.07999 * 119.93496 * 179.97438 * 21 20 19 34 34 H 1.07993 * 120.00704 * 179.72595 * 24 13 12 35 35 H 1.08005 * 119.99380 * 180.22990 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4972 2.0464 -1.4000 5 1 1.4470 2.6527 0.7001 6 1 3.5472 1.4402 0.7002 7 6 2.0089 -1.2006 0.0005 8 1 3.0889 -1.2005 0.0010 9 8 1.3349 -2.3681 0.0016 10 6 2.0703 -3.5045 -0.1041 11 6 3.4578 -3.4372 -0.0950 12 6 4.2054 -4.5921 -0.2029 13 6 3.5703 -5.8222 -0.3213 14 7 4.3281 -6.9933 -0.4302 15 6 5.4936 -7.1062 0.2371 16 8 5.9273 -6.1613 0.8674 17 6 6.2445 -8.3782 0.2025 18 6 5.7490 -9.4658 -0.5197 19 6 6.4545 -10.6504 -0.5475 20 6 7.6512 -10.7637 0.1388 21 6 8.1481 -9.6916 0.8572 22 6 7.4524 -8.4991 0.8935 23 35 8.1333 -7.0337 1.8757 24 6 2.1825 -5.8888 -0.3366 25 6 1.4352 -4.7342 -0.2233 26 1 -0.4850 0.8400 -0.0004 27 1 3.9514 -2.4810 -0.0043 28 1 5.2841 -4.5397 -0.1963 29 1 4.0147 -7.7239 -0.9859 30 1 4.8154 -9.3792 -1.0557 31 1 6.0744 -11.4905 -1.1096 32 1 8.1995 -11.6938 0.1131 33 1 9.0822 -9.7870 1.3908 34 1 1.6887 -6.8443 -0.4330 35 1 0.3565 -4.7863 -0.2315 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000023150434.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:19 Heat of formation + Delta-G solvation = -4.412436 kcal Electronic energy + Delta-G solvation = -22284.685170 eV Core-core repulsion = 18680.765783 eV Total energy + Delta-G solvation = -3603.919387 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 361.010 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.73024 -40.59687 -39.50861 -38.05696 -35.53595 -34.20714 -33.25396 -32.46497 -31.84770 -30.25361 -29.39414 -27.31395 -25.17268 -23.94816 -23.56192 -22.66684 -21.39835 -20.05864 -19.41475 -18.69041 -17.98650 -17.00577 -16.53471 -16.36232 -16.19986 -15.98594 -15.67797 -15.49338 -15.32866 -14.84697 -14.65813 -14.47447 -14.22343 -13.97528 -13.56874 -13.28767 -13.20097 -12.73413 -12.67825 -12.47873 -12.21862 -12.14234 -11.83367 -11.82404 -11.37753 -11.02937 -10.55776 -10.11458 -10.01932 -9.78489 -9.75735 -8.61083 -8.47740 -6.14291 -0.37089 0.14841 0.52962 0.60376 0.71548 1.34064 1.42241 1.50944 1.81677 2.04660 2.17409 2.68323 2.83503 3.14737 3.50706 3.54571 3.71141 4.01784 4.10661 4.12458 4.28153 4.32000 4.47482 4.48742 4.65505 4.73694 4.79776 5.03765 5.08923 5.12567 5.22158 5.34585 5.35571 5.45143 5.58892 5.70158 5.75290 6.01799 6.15926 6.49162 6.97034 7.17691 7.76446 8.75022 Molecular weight = 361.01amu Principal moments of inertia in cm(-1) A = 0.017997 B = 0.002538 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.438913 B =11029.713321 C =12393.614330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.020 4.020 3 Si 1.015 2.985 4 H -0.261 1.261 5 H -0.268 1.268 6 H -0.259 1.259 7 C -0.413 4.413 8 H 0.096 0.904 9 O -0.227 6.227 10 C 0.108 3.892 11 C -0.229 4.229 12 C -0.074 4.074 13 C 0.064 3.936 14 N -0.642 5.642 15 C 0.533 3.467 16 O -0.531 6.531 17 C -0.133 4.133 18 C -0.077 4.077 19 C -0.105 4.105 20 C -0.079 4.079 21 C -0.107 4.107 22 C -0.066 4.066 23 Br -0.043 7.043 24 C -0.075 4.075 25 C -0.180 4.180 26 H 0.273 0.727 27 H 0.115 0.885 28 H 0.126 0.874 29 H 0.422 0.578 30 H 0.161 0.839 31 H 0.174 0.826 32 H 0.172 0.828 33 H 0.151 0.849 34 H 0.168 0.832 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.166 -27.396 -1.997 32.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.217 4.217 3 Si 0.834 3.166 4 H -0.186 1.186 5 H -0.193 1.193 6 H -0.183 1.183 7 C -0.490 4.490 8 H 0.113 0.887 9 O -0.133 6.133 10 C 0.057 3.943 11 C -0.249 4.249 12 C -0.094 4.094 13 C -0.030 4.030 14 N -0.290 5.290 15 C 0.322 3.678 16 O -0.408 6.408 17 C -0.138 4.138 18 C -0.097 4.097 19 C -0.123 4.123 20 C -0.098 4.098 21 C -0.127 4.127 22 C -0.147 4.147 23 Br 0.043 6.957 24 C -0.095 4.095 25 C -0.199 4.199 26 H 0.082 0.918 27 H 0.132 0.868 28 H 0.143 0.857 29 H 0.262 0.738 30 H 0.178 0.822 31 H 0.191 0.809 32 H 0.189 0.811 33 H 0.169 0.831 34 H 0.186 0.814 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 17.346 -26.020 -1.136 31.293 hybrid contribution -0.087 0.811 -0.199 0.840 sum 17.259 -25.209 -1.335 30.580 Atomic orbital electron populations 1.70169 1.07808 1.28804 1.48784 1.26505 0.96858 1.02491 0.95874 0.84640 0.77719 0.74872 0.79329 1.18620 1.19263 1.18252 1.21753 0.92350 0.81630 1.53232 0.88664 1.83932 1.35577 1.12396 1.81422 1.19943 0.91046 0.88415 0.94904 1.21085 0.93342 0.99257 1.11250 1.20928 0.99813 0.90736 0.97909 1.17336 0.90504 0.85628 1.09518 1.42977 1.21106 1.16904 1.48012 1.18798 0.81353 0.88570 0.79100 1.90970 1.67038 1.40499 1.42278 1.19647 0.96005 0.94782 1.03335 1.21702 1.00553 0.91504 0.95900 1.21728 0.94386 0.97878 0.98331 1.21870 0.95690 0.98850 0.93340 1.21423 1.00518 0.90752 0.99999 1.22218 0.96933 0.95112 1.00413 1.96799 1.84212 1.43750 1.70913 1.20783 0.90925 0.98380 0.99425 1.20324 1.00366 0.89593 1.09650 0.91757 0.86757 0.85662 0.73801 0.82190 0.80855 0.81055 0.83124 0.81411 0.85239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.91 13.67 21.61 0.30 -56.61 16 2 C -0.02 -1.14 5.49 84.83 0.47 -0.67 16 3 Si 1.02 44.36 29.55 68.60 2.03 46.39 16 4 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 5 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 6 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 7 C -0.41 -24.86 9.48 67.91 0.64 -24.22 16 8 H 0.10 5.40 5.20 -2.91 -0.02 5.38 16 9 O -0.23 -13.86 9.75 -22.86 -0.22 -14.09 16 10 C 0.11 5.48 6.65 22.59 0.15 5.63 16 11 C -0.23 -10.95 9.16 22.37 0.20 -10.74 16 12 C -0.07 -3.02 8.68 22.38 0.19 -2.83 16 13 C 0.06 2.13 6.30 38.19 0.24 2.37 16 14 N -0.64 -15.80 5.28 -306.04 -1.62 -17.42 16 15 C 0.53 14.95 7.60 86.76 0.66 15.61 16 16 O -0.53 -19.29 10.91 -3.97 -0.04 -19.33 16 17 C -0.13 -2.75 5.88 -20.08 -0.12 -2.86 16 18 C -0.08 -0.88 9.54 22.53 0.21 -0.67 16 19 C -0.11 -0.68 10.03 22.23 0.22 -0.46 16 20 C -0.08 -0.57 10.04 22.32 0.22 -0.34 16 21 C -0.11 -1.44 9.78 22.25 0.22 -1.23 16 22 C -0.07 -1.40 6.26 22.59 0.14 -1.25 16 23 Br -0.04 -1.16 30.40 -20.37 -0.62 -1.78 16 24 C -0.08 -2.40 9.96 22.38 0.22 -2.17 16 25 C -0.18 -7.42 9.98 22.37 0.22 -7.20 16 26 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 27 H 0.11 5.67 5.63 -2.91 -0.02 5.66 16 28 H 0.13 5.17 6.23 -2.91 -0.02 5.15 16 29 H 0.42 6.35 6.87 -92.71 -0.64 5.71 16 30 H 0.16 0.87 6.42 -2.91 -0.02 0.85 16 31 H 0.17 -0.13 8.06 -2.91 -0.02 -0.15 16 32 H 0.17 0.03 8.06 -2.91 -0.02 0.01 16 33 H 0.15 1.55 8.06 -2.91 -0.02 1.52 16 34 H 0.17 3.59 8.06 -2.91 -0.02 3.57 16 35 H 0.13 5.08 8.06 -2.91 -0.02 5.06 16 Total: -1.00 -81.26 324.65 4.26 -77.00 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: 0.53 Total: 16.87 kcal Atomic # 6 Polarization: -34.94 SS G_CDS: 3.91 Total: -31.03 kcal Atomic # 7 Polarization: -72.71 SS G_CDS: -1.32 Total: -74.03 kcal Atomic # 8 Polarization: -33.15 SS G_CDS: -0.27 Total: -33.42 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Atomic # 35 Polarization: -1.16 SS G_CDS: -0.62 Total: -1.78 kcal Total: -81.26 4.26 -77.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023150434.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.586 kcal (2) G-P(sol) polarization free energy of solvation -81.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds