Wall clock time and date at job start Tue Mar 31 2020 06:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 119.99419 * 2 1 4 4 H 1.48497 * 109.47213 * 269.99691 * 3 2 1 5 5 H 1.48501 * 109.47394 * 30.00101 * 3 2 1 6 6 H 1.48504 * 109.46960 * 150.00368 * 3 2 1 7 7 C 1.38813 * 120.00688 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00202 * 200.03138 * 7 2 1 9 9 N 1.36940 * 119.99717 * 20.03049 * 7 2 1 10 10 C 1.47069 * 120.88052 * 210.03365 * 9 7 2 11 11 C 1.53239 * 108.52167 * 231.16270 * 10 9 7 12 12 N 1.46902 * 109.34101 * 306.17062 * 11 10 9 13 13 C 1.38520 * 110.99734 * 187.25229 * 12 11 10 14 14 C 1.41087 * 120.30274 * 295.69658 * 13 12 11 15 15 N 1.30409 * 120.40222 * 179.97438 * 14 13 12 16 16 N 1.39878 * 121.02058 * 0.02562 * 15 14 13 17 17 C 1.39931 * 119.71558 * 180.02562 * 16 15 14 18 18 C 1.38905 * 120.07430 * 130.07375 * 17 16 15 19 19 C 1.38100 * 119.92566 * 179.79155 * 18 17 16 20 20 C 1.38291 * 120.07280 * 0.47796 * 19 18 17 21 21 C 1.38289 * 120.14777 * 359.75008 * 20 19 18 22 22 C 1.38105 * 120.07173 * 0.02562 * 21 20 19 23 23 C 1.34752 * 120.56088 * 0.02562 * 16 15 14 24 24 O 1.22158 * 120.20332 * 179.97438 * 23 16 15 25 25 C 1.38354 * 120.29791 * 115.42320 * 13 12 11 26 26 Cl 1.73594 * 120.48875 * 0.02562 * 25 13 12 27 27 C 1.46896 * 111.26728 * 63.10568 * 12 11 10 28 28 C 1.47086 * 120.87983 * 30.01079 * 9 7 2 29 29 H 0.96992 * 120.00410 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.63137 * 350.87563 * 10 9 7 31 31 H 1.09004 * 109.62772 * 111.45464 * 10 9 7 32 32 H 1.09001 * 109.49286 * 66.13473 * 11 10 9 33 33 H 1.09003 * 109.49463 * 186.21260 * 11 10 9 34 34 H 1.07997 * 119.80286 * 359.97438 * 14 13 12 35 35 H 1.08000 * 120.03128 * 0.02562 * 18 17 16 36 36 H 1.08002 * 119.96010 * 180.23331 * 19 18 17 37 37 H 1.08001 * 119.92569 * 179.77027 * 20 19 18 38 38 H 1.07997 * 119.95949 * 179.97438 * 21 20 19 39 39 H 1.08000 * 120.03255 * 179.97438 * 22 21 20 40 40 H 1.08997 * 109.49420 * 176.93832 * 27 12 11 41 41 H 1.08996 * 109.51569 * 56.86449 * 27 12 11 42 42 H 1.08995 * 109.62974 * 248.54839 * 28 9 7 43 43 H 1.09006 * 109.62622 * 9.12990 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6179 0.0000 4 1 2.4975 2.0465 -1.4000 5 1 1.4474 2.6528 0.7000 6 1 3.5477 1.4404 0.7000 7 6 2.0104 -1.2021 -0.0005 8 1 3.0413 -1.2304 0.3198 9 7 1.3879 -2.3520 -0.4073 10 6 1.7751 -3.6572 0.1489 11 6 2.0436 -4.6208 -1.0121 12 7 0.8756 -4.6469 -1.9027 13 6 1.0136 -5.6252 -2.8736 14 6 2.0432 -5.5348 -3.8339 15 7 2.1751 -6.4550 -4.7486 16 7 1.3046 -7.5486 -4.8017 17 6 1.4716 -8.5204 -5.7946 18 6 1.5070 -9.8662 -5.4524 19 6 1.6676 -10.8230 -6.4353 20 6 1.8030 -10.4420 -7.7578 21 6 1.7729 -9.1027 -8.1013 22 6 1.6080 -8.1411 -7.1238 23 6 0.3067 -7.6742 -3.9050 24 8 -0.4500 -8.6317 -3.9578 25 6 0.1463 -6.7027 -2.9069 26 17 -1.1266 -6.8454 -1.7353 27 6 0.6400 -3.3308 -2.5111 28 6 0.3139 -2.3144 -1.4116 29 1 -0.4850 0.8399 -0.0004 30 1 2.6783 -3.5462 0.7489 31 1 0.9664 -4.0460 0.7678 32 1 2.9182 -4.2846 -1.5689 33 1 2.2243 -5.6216 -0.6198 34 1 2.7262 -4.6986 -3.8115 35 1 1.4053 -10.1641 -4.4193 36 1 1.6915 -11.8697 -6.1703 37 1 1.9322 -11.1920 -8.5240 38 1 1.8794 -8.8086 -9.1350 39 1 1.5850 -7.0954 -7.3928 40 1 -0.1972 -3.3959 -3.2060 41 1 1.5339 -3.0123 -3.0474 42 1 -0.6351 -2.5740 -0.9427 43 1 0.2512 -1.3154 -1.8433 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000024585964.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:50 Heat of formation + Delta-G solvation = 109.142576 kcal Electronic energy + Delta-G solvation = -29412.576537 eV Core-core repulsion = 25293.853458 eV Total energy + Delta-G solvation = -4118.723079 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 360.109 amu Computer time = 2.14 seconds Orbital eigenvalues (eV) -41.69830 -39.59350 -38.69112 -37.30496 -36.57187 -35.12482 -33.49220 -31.74337 -31.29178 -30.84048 -30.22074 -29.56641 -26.83142 -24.82140 -24.13998 -23.00935 -22.88352 -22.65316 -21.86068 -19.64100 -18.91733 -18.37837 -17.36442 -16.80536 -16.43810 -16.30650 -15.96995 -15.09550 -14.96392 -14.71227 -14.52898 -14.35549 -14.00981 -13.88289 -13.74685 -13.64904 -13.29443 -13.19293 -12.86160 -12.68049 -12.18024 -12.09982 -11.76187 -11.69305 -11.53378 -11.33325 -10.85962 -10.85410 -10.82147 -10.60453 -10.42685 -10.23081 -10.15485 -9.94764 -9.78187 -9.27023 -9.07030 -8.63023 -8.53922 -8.38132 -6.78521 -5.90147 -3.33601 -0.10447 0.91820 1.06555 1.40891 1.54664 2.14788 2.94152 3.31352 3.37747 3.39497 3.40467 3.61650 3.96738 4.40122 4.46300 4.59801 4.61246 4.65586 4.78635 5.00482 5.06467 5.14123 5.20242 5.27209 5.28146 5.52438 5.54823 5.67536 5.69201 5.83846 5.87162 5.89606 6.01843 6.08663 6.10357 6.16501 6.29380 6.42456 6.61483 6.74168 6.94397 7.18867 7.25562 7.28274 7.43842 7.53474 7.72233 8.32288 9.08192 9.71124 10.31081 11.18725 Molecular weight = 360.11amu Principal moments of inertia in cm(-1) A = 0.019346 B = 0.002471 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.953688 B =11326.455344 C =12150.838878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.009 3.991 3 Si 0.900 3.100 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.262 4.262 8 H 0.066 0.934 9 N -0.592 5.592 10 C 0.150 3.850 11 C 0.048 3.952 12 N -0.496 5.496 13 C 0.145 3.855 14 C 0.069 3.931 15 N -0.209 5.209 16 N -0.369 5.369 17 C 0.144 3.856 18 C -0.094 4.094 19 C -0.108 4.108 20 C -0.115 4.115 21 C -0.111 4.111 22 C -0.102 4.102 23 C 0.514 3.486 24 O -0.510 6.510 25 C -0.094 4.094 26 Cl 0.013 6.987 27 C 0.038 3.962 28 C 0.182 3.818 29 H 0.256 0.744 30 H 0.063 0.937 31 H 0.031 0.969 32 H 0.042 0.958 33 H 0.068 0.932 34 H 0.202 0.798 35 H 0.129 0.871 36 H 0.131 0.869 37 H 0.127 0.873 38 H 0.131 0.869 39 H 0.130 0.870 40 H 0.067 0.933 41 H 0.040 0.960 42 H 0.034 0.966 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.445 -17.311 -13.404 22.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.191 4.191 3 Si 0.730 3.270 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.391 4.391 8 H 0.084 0.916 9 N -0.315 5.315 10 C 0.023 3.977 11 C -0.079 4.079 12 N -0.219 5.219 13 C 0.042 3.958 14 C -0.133 4.133 15 N -0.020 5.020 16 N -0.183 5.183 17 C 0.055 3.945 18 C -0.114 4.114 19 C -0.127 4.127 20 C -0.134 4.134 21 C -0.130 4.130 22 C -0.122 4.122 23 C 0.309 3.691 24 O -0.385 6.385 25 C -0.133 4.133 26 Cl 0.042 6.958 27 C -0.089 4.089 28 C 0.056 3.944 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.049 0.951 32 H 0.060 0.940 33 H 0.086 0.914 34 H 0.219 0.781 35 H 0.147 0.853 36 H 0.149 0.851 37 H 0.145 0.855 38 H 0.149 0.851 39 H 0.148 0.852 40 H 0.086 0.914 41 H 0.058 0.942 42 H 0.052 0.948 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.855 -18.104 -13.734 23.048 hybrid contribution 0.409 1.422 0.366 1.524 sum 4.264 -16.682 -13.368 21.798 Atomic orbital electron populations 1.70061 1.05326 1.25829 1.52589 1.25097 0.95173 0.98612 1.00236 0.86340 0.79277 0.83694 0.77736 1.21369 1.21744 1.20353 1.19114 0.93591 0.85057 1.41336 0.91591 1.44095 1.41931 1.01520 1.43995 1.20978 0.98666 0.86118 0.91913 1.22817 0.88863 1.00702 0.95529 1.59365 1.41100 1.05067 1.16369 1.20082 0.90984 0.92770 0.91927 1.24874 0.98736 0.97877 0.91814 1.75337 1.11289 0.95047 1.20349 1.46896 1.25033 1.19263 1.27071 1.17391 1.03629 0.86729 0.86792 1.21106 0.98598 0.90918 1.00759 1.21026 0.99772 0.99353 0.92541 1.21268 0.99473 0.96217 0.96421 1.21035 1.00078 0.92643 0.99214 1.21084 0.99893 1.00618 0.90621 1.16938 0.81864 0.87829 0.82454 1.91057 1.42880 1.31881 1.72672 1.22412 0.97179 0.96754 0.96962 1.98403 1.46516 1.97193 1.53691 1.23096 0.99809 0.86904 0.99049 1.20784 0.90890 0.95620 0.87102 0.93456 0.91855 0.95124 0.94013 0.91365 0.78144 0.85316 0.85126 0.85469 0.85148 0.85215 0.91431 0.94210 0.94771 0.89734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.80 11.62 55.49 0.64 -24.16 16 2 C 0.01 0.23 4.82 -17.43 -0.08 0.15 16 3 Si 0.90 20.58 29.60 -169.99 -5.03 15.55 16 4 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.26 -6.67 9.57 -15.06 -0.14 -6.81 16 8 H 0.07 1.66 7.91 -52.49 -0.41 1.24 16 9 N -0.59 -13.57 3.01 -172.01 -0.52 -14.09 16 10 C 0.15 2.85 6.69 -3.61 -0.02 2.83 16 11 C 0.05 0.73 5.30 -3.70 -0.02 0.71 16 12 N -0.50 -7.73 4.00 -170.65 -0.68 -8.41 16 13 C 0.14 2.03 4.64 -83.72 -0.39 1.64 16 14 C 0.07 0.82 10.02 -17.08 -0.17 0.65 16 15 N -0.21 -2.63 11.28 30.81 0.35 -2.29 16 16 N -0.37 -5.11 3.61 -12.75 -0.05 -5.16 16 17 C 0.14 1.83 5.62 -83.67 -0.47 1.36 16 18 C -0.09 -1.08 8.71 -39.39 -0.34 -1.43 16 19 C -0.11 -0.96 10.04 -39.61 -0.40 -1.36 16 20 C -0.12 -0.89 10.04 -39.54 -0.40 -1.29 16 21 C -0.11 -0.92 10.04 -39.61 -0.40 -1.32 16 22 C -0.10 -1.08 9.74 -39.38 -0.38 -1.46 16 23 C 0.51 8.00 7.24 -15.53 -0.11 7.89 16 24 O -0.51 -8.89 15.26 4.77 0.07 -8.82 16 25 C -0.09 -1.42 6.39 -38.80 -0.25 -1.67 16 26 Cl 0.01 0.20 28.08 -51.86 -1.46 -1.26 16 27 C 0.04 0.63 5.24 -3.70 -0.02 0.62 16 28 C 0.18 3.95 5.42 -3.60 -0.02 3.93 16 29 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 30 H 0.06 1.16 7.95 -51.93 -0.41 0.74 16 31 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.04 0.60 7.62 -51.93 -0.40 0.20 16 33 H 0.07 0.93 8.09 -51.93 -0.42 0.51 16 34 H 0.20 1.94 7.22 -52.49 -0.38 1.56 16 35 H 0.13 1.56 7.47 -52.49 -0.39 1.17 16 36 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 37 H 0.13 0.64 8.06 -52.49 -0.42 0.21 16 38 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 39 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 40 H 0.07 1.06 8.09 -51.93 -0.42 0.64 16 41 H 0.04 0.62 7.40 -51.93 -0.38 0.24 16 42 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.08 2.03 6.49 -51.93 -0.34 1.70 16 LS Contribution 372.38 15.07 5.61 5.61 Total: -1.00 -30.14 372.38 -9.90 -40.04 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -5.23 Total: -1.43 kcal Atomic # 6 Polarization: 8.04 SS G_CDS: -3.62 Total: 4.42 kcal Atomic # 7 Polarization: -53.86 SS G_CDS: -0.25 Total: -54.11 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.07 Total: -8.82 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.03 Total: 15.55 kcal Atomic # 17 Polarization: 0.20 SS G_CDS: -1.46 Total: -1.26 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.14 -9.90 -40.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000024585964.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.184 kcal (2) G-P(sol) polarization free energy of solvation -30.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.14 seconds