Wall clock time and date at job start Tue Mar 31 2020 06:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 119.99419 * 2 1 4 4 H 1.48497 * 109.47213 * 269.99691 * 3 2 1 5 5 H 1.48501 * 109.47394 * 30.00101 * 3 2 1 6 6 H 1.48504 * 109.46960 * 150.00368 * 3 2 1 7 7 C 1.38813 * 120.00688 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00202 * 200.03138 * 7 2 1 9 9 N 1.36940 * 119.99717 * 20.03049 * 7 2 1 10 10 C 1.47069 * 120.88052 * 210.03365 * 9 7 2 11 11 C 1.53239 * 108.52167 * 231.16270 * 10 9 7 12 12 N 1.46902 * 109.34101 * 306.17062 * 11 10 9 13 13 C 1.38520 * 110.99734 * 187.25229 * 12 11 10 14 14 C 1.41087 * 120.30274 * 295.69658 * 13 12 11 15 15 N 1.30409 * 120.40222 * 179.97438 * 14 13 12 16 16 N 1.39878 * 121.02058 * 0.02562 * 15 14 13 17 17 C 1.39931 * 119.71558 * 180.02562 * 16 15 14 18 18 C 1.38905 * 120.07430 * 130.07375 * 17 16 15 19 19 C 1.38100 * 119.92566 * 179.79155 * 18 17 16 20 20 C 1.38291 * 120.07280 * 0.47796 * 19 18 17 21 21 C 1.38289 * 120.14777 * 359.75008 * 20 19 18 22 22 C 1.38105 * 120.07173 * 0.02562 * 21 20 19 23 23 C 1.34752 * 120.56088 * 0.02562 * 16 15 14 24 24 O 1.22158 * 120.20332 * 179.97438 * 23 16 15 25 25 C 1.38354 * 120.29791 * 115.42320 * 13 12 11 26 26 Cl 1.73594 * 120.48875 * 0.02562 * 25 13 12 27 27 C 1.46896 * 111.26728 * 63.10568 * 12 11 10 28 28 C 1.47086 * 120.87983 * 30.01079 * 9 7 2 29 29 H 0.96992 * 120.00410 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.63137 * 350.87563 * 10 9 7 31 31 H 1.09004 * 109.62772 * 111.45464 * 10 9 7 32 32 H 1.09001 * 109.49286 * 66.13473 * 11 10 9 33 33 H 1.09003 * 109.49463 * 186.21260 * 11 10 9 34 34 H 1.07997 * 119.80286 * 359.97438 * 14 13 12 35 35 H 1.08000 * 120.03128 * 0.02562 * 18 17 16 36 36 H 1.08002 * 119.96010 * 180.23331 * 19 18 17 37 37 H 1.08001 * 119.92569 * 179.77027 * 20 19 18 38 38 H 1.07997 * 119.95949 * 179.97438 * 21 20 19 39 39 H 1.08000 * 120.03255 * 179.97438 * 22 21 20 40 40 H 1.08997 * 109.49420 * 176.93832 * 27 12 11 41 41 H 1.08996 * 109.51569 * 56.86449 * 27 12 11 42 42 H 1.08995 * 109.62974 * 248.54839 * 28 9 7 43 43 H 1.09006 * 109.62622 * 9.12990 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6179 0.0000 4 1 2.4975 2.0465 -1.4000 5 1 1.4474 2.6528 0.7000 6 1 3.5477 1.4404 0.7000 7 6 2.0104 -1.2021 -0.0005 8 1 3.0413 -1.2304 0.3198 9 7 1.3879 -2.3520 -0.4073 10 6 1.7751 -3.6572 0.1489 11 6 2.0436 -4.6208 -1.0121 12 7 0.8756 -4.6469 -1.9027 13 6 1.0136 -5.6252 -2.8736 14 6 2.0432 -5.5348 -3.8339 15 7 2.1751 -6.4550 -4.7486 16 7 1.3046 -7.5486 -4.8017 17 6 1.4716 -8.5204 -5.7946 18 6 1.5070 -9.8662 -5.4524 19 6 1.6676 -10.8230 -6.4353 20 6 1.8030 -10.4420 -7.7578 21 6 1.7729 -9.1027 -8.1013 22 6 1.6080 -8.1411 -7.1238 23 6 0.3067 -7.6742 -3.9050 24 8 -0.4500 -8.6317 -3.9578 25 6 0.1463 -6.7027 -2.9069 26 17 -1.1266 -6.8454 -1.7353 27 6 0.6400 -3.3308 -2.5111 28 6 0.3139 -2.3144 -1.4116 29 1 -0.4850 0.8399 -0.0004 30 1 2.6783 -3.5462 0.7489 31 1 0.9664 -4.0460 0.7678 32 1 2.9182 -4.2846 -1.5689 33 1 2.2243 -5.6216 -0.6198 34 1 2.7262 -4.6986 -3.8115 35 1 1.4053 -10.1641 -4.4193 36 1 1.6915 -11.8697 -6.1703 37 1 1.9322 -11.1920 -8.5240 38 1 1.8794 -8.8086 -9.1350 39 1 1.5850 -7.0954 -7.3928 40 1 -0.1972 -3.3959 -3.2060 41 1 1.5339 -3.0123 -3.0474 42 1 -0.6351 -2.5740 -0.9427 43 1 0.2512 -1.3154 -1.8433 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000024585964.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:49 Heat of formation + Delta-G solvation = 92.042246 kcal Electronic energy + Delta-G solvation = -29413.318063 eV Core-core repulsion = 25293.853458 eV Total energy + Delta-G solvation = -4119.464605 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 360.109 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.76612 -40.70056 -39.66724 -38.50249 -37.79423 -36.58592 -34.68792 -33.30650 -32.17472 -31.98060 -31.70980 -30.55881 -28.38672 -25.95104 -25.48789 -24.39402 -24.20604 -23.46478 -22.94685 -21.10060 -19.81514 -19.61211 -18.85666 -17.88100 -17.60444 -17.45958 -16.97294 -16.67713 -16.08087 -16.01977 -15.63285 -15.37499 -15.33291 -15.25723 -15.07965 -14.77786 -14.44825 -14.26210 -14.16727 -13.76518 -13.36538 -13.23133 -13.11426 -13.07385 -12.63038 -12.60878 -12.45059 -12.24827 -12.18516 -12.04193 -12.02146 -11.73801 -11.65006 -11.31052 -11.15125 -10.56722 -10.10598 -9.98748 -9.66820 -9.48228 -8.66490 -7.86751 -5.32419 -1.20232 0.12514 0.35051 0.35987 0.49330 1.04553 1.50541 1.52731 1.60669 1.85622 2.31886 2.54126 2.64178 2.97651 3.28817 3.34362 3.62356 3.65414 3.87116 3.91016 3.99150 4.19804 4.23682 4.25705 4.27504 4.40859 4.43268 4.45185 4.52966 4.61964 4.66485 4.85745 4.94384 5.00358 5.08417 5.15069 5.31669 5.32291 5.40444 5.48859 5.64495 5.68625 5.84109 5.91150 6.00800 6.15212 6.39865 6.45984 7.15268 7.84319 8.40526 9.20225 Molecular weight = 360.11amu Principal moments of inertia in cm(-1) A = 0.019346 B = 0.002471 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.953688 B =11326.455344 C =12150.838878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.044 4.044 3 Si 0.962 3.038 4 H -0.283 1.283 5 H -0.302 1.302 6 H -0.268 1.268 7 C -0.262 4.262 8 H 0.071 0.929 9 N -0.608 5.608 10 C 0.147 3.853 11 C 0.059 3.941 12 N -0.508 5.508 13 C 0.159 3.841 14 C 0.077 3.923 15 N -0.203 5.203 16 N -0.364 5.364 17 C 0.108 3.892 18 C -0.114 4.114 19 C -0.110 4.110 20 C -0.106 4.106 21 C -0.107 4.107 22 C -0.112 4.112 23 C 0.510 3.490 24 O -0.540 6.540 25 C -0.107 4.107 26 Cl -0.001 7.001 27 C 0.055 3.945 28 C 0.191 3.809 29 H 0.250 0.750 30 H 0.071 0.929 31 H 0.013 0.987 32 H 0.063 0.937 33 H 0.089 0.911 34 H 0.232 0.768 35 H 0.112 0.888 36 H 0.154 0.846 37 H 0.163 0.837 38 H 0.161 0.839 39 H 0.132 0.868 40 H 0.078 0.922 41 H 0.060 0.940 42 H -0.001 1.001 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.818 -18.479 -15.867 25.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.241 4.241 3 Si 0.791 3.209 4 H -0.210 1.210 5 H -0.229 1.229 6 H -0.192 1.192 7 C -0.392 4.392 8 H 0.089 0.911 9 N -0.332 5.332 10 C 0.021 3.979 11 C -0.067 4.067 12 N -0.231 5.231 13 C 0.057 3.943 14 C -0.124 4.124 15 N -0.015 5.015 16 N -0.177 5.177 17 C 0.019 3.981 18 C -0.134 4.134 19 C -0.128 4.128 20 C -0.124 4.124 21 C -0.125 4.125 22 C -0.132 4.132 23 C 0.305 3.695 24 O -0.418 6.418 25 C -0.146 4.146 26 Cl 0.028 6.972 27 C -0.071 4.071 28 C 0.064 3.936 29 H 0.059 0.941 30 H 0.089 0.911 31 H 0.031 0.969 32 H 0.081 0.919 33 H 0.107 0.893 34 H 0.248 0.752 35 H 0.130 0.870 36 H 0.171 0.829 37 H 0.180 0.820 38 H 0.179 0.821 39 H 0.150 0.850 40 H 0.096 0.904 41 H 0.079 0.921 42 H 0.017 0.983 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.273 -19.301 -16.216 25.978 hybrid contribution -0.296 1.676 1.108 2.031 sum 5.977 -17.625 -15.108 23.971 Atomic orbital electron populations 1.70209 1.06791 1.25961 1.54774 1.25807 0.95781 1.01557 1.00934 0.85354 0.78192 0.79790 0.77599 1.20997 1.22886 1.19245 1.19457 0.93844 0.86025 1.39845 0.91112 1.44361 1.41833 1.02299 1.44697 1.21084 0.98203 0.85144 0.93434 1.22658 0.89177 1.00643 0.94254 1.59152 1.41941 1.04822 1.17154 1.19980 0.91096 0.91579 0.91695 1.25203 0.98216 0.98359 0.90649 1.75401 1.10856 0.94839 1.20383 1.47001 1.24315 1.19592 1.26798 1.17761 1.06078 0.86868 0.87393 1.21164 1.00061 0.91364 1.00812 1.21362 0.98779 0.99979 0.92678 1.21712 0.97260 0.96879 0.96572 1.21444 0.98462 0.92484 1.00142 1.21255 1.00230 1.01468 0.90213 1.17012 0.82091 0.87563 0.82810 1.91027 1.44157 1.32991 1.73612 1.22504 0.97447 0.97534 0.97127 1.98395 1.47303 1.97308 1.54173 1.22758 1.01160 0.86114 0.97108 1.20503 0.89383 0.95682 0.87987 0.94142 0.91068 0.96940 0.91926 0.89299 0.75225 0.86994 0.82875 0.81970 0.82107 0.84958 0.90357 0.92147 0.98279 0.92564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.21 11.62 21.65 0.25 -52.96 16 2 C -0.04 -2.35 4.82 84.86 0.41 -1.94 16 3 Si 0.96 42.54 29.60 68.60 2.03 44.57 16 4 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 6 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 7 C -0.26 -13.28 9.57 84.03 0.80 -12.48 16 8 H 0.07 3.47 7.91 -2.91 -0.02 3.45 16 9 N -0.61 -27.84 3.01 -698.12 -2.10 -29.95 16 10 C 0.15 5.48 6.69 86.35 0.58 6.05 16 11 C 0.06 1.66 5.30 86.38 0.46 2.12 16 12 N -0.51 -15.05 4.00 -693.83 -2.77 -17.82 16 13 C 0.16 4.17 4.64 38.81 0.18 4.35 16 14 C 0.08 1.61 10.02 85.60 0.86 2.47 16 15 N -0.20 -4.73 11.28 -56.43 -0.64 -5.37 16 16 N -0.36 -9.85 3.61 -312.29 -1.13 -10.98 16 17 C 0.11 2.66 5.62 38.17 0.21 2.88 16 18 C -0.11 -2.60 8.71 22.40 0.20 -2.40 16 19 C -0.11 -1.72 10.04 22.25 0.22 -1.50 16 20 C -0.11 -1.27 10.04 22.29 0.22 -1.05 16 21 C -0.11 -1.43 10.04 22.25 0.22 -1.21 16 22 C -0.11 -2.17 9.74 22.40 0.22 -1.95 16 23 C 0.51 15.89 7.24 84.72 0.61 16.50 16 24 O -0.54 -19.33 15.26 -5.83 -0.09 -19.42 16 25 C -0.11 -3.20 6.39 22.78 0.15 -3.05 16 26 Cl 0.00 -0.03 28.08 -2.72 -0.08 -0.11 16 27 C 0.06 1.77 5.24 86.39 0.45 2.22 16 28 C 0.19 8.40 5.42 86.35 0.47 8.87 16 29 H 0.25 13.91 8.31 -92.71 -0.77 13.14 16 30 H 0.07 2.51 7.95 -2.39 -0.02 2.49 16 31 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 32 H 0.06 1.55 7.62 -2.39 -0.02 1.53 16 33 H 0.09 2.19 8.09 -2.39 -0.02 2.17 16 34 H 0.23 3.43 7.22 -2.91 -0.02 3.41 16 35 H 0.11 2.83 7.47 -2.91 -0.02 2.81 16 36 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 37 H 0.16 0.81 8.06 -2.91 -0.02 0.79 16 38 H 0.16 1.13 8.06 -2.91 -0.02 1.11 16 39 H 0.13 2.39 8.06 -2.91 -0.02 2.37 16 40 H 0.08 2.35 8.09 -2.39 -0.02 2.33 16 41 H 0.06 1.71 7.40 -2.39 -0.02 1.69 16 42 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 43 H 0.06 2.78 6.49 -2.38 -0.02 2.77 16 Total: -1.00 -68.01 372.38 2.78 -65.23 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: 1.04 Total: 6.92 kcal Atomic # 6 Polarization: 13.62 SS G_CDS: 6.26 Total: 19.89 kcal Atomic # 7 Polarization: -110.69 SS G_CDS: -6.39 Total: -117.08 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.09 Total: -19.42 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Atomic # 17 Polarization: -0.03 SS G_CDS: -0.08 Total: -0.11 kcal Total: -68.01 2.78 -65.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000024585964.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.272 kcal (2) G-P(sol) polarization free energy of solvation -68.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds