Wall clock time and date at job start Tue Mar 31 2020 05:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21309 * 119.99708 * 2 1 4 4 C 1.46747 * 120.00537 * 180.02562 * 2 1 3 5 5 C 1.40107 * 120.09978 * 179.97438 * 4 2 1 6 6 C 1.36539 * 119.90366 * 180.02562 * 5 4 2 7 7 C 1.39312 * 120.10107 * 0.02562 * 6 5 4 8 8 N 1.38888 * 119.91040 * 179.97438 * 7 6 5 9 9 C 1.46955 * 111.00083 * 180.02562 * 8 7 6 10 10 C 1.53055 * 109.36220 * 183.19099 * 9 8 7 11 11 N 1.46965 * 109.36354 * 301.59453 * 10 9 8 12 12 C 1.46889 * 110.99870 * 183.18786 * 11 10 9 13 13 C 1.50706 * 109.47109 * 170.00198 * 12 11 10 14 14 O 1.21281 * 119.99699 * 359.97438 * 13 12 11 15 15 N 1.34773 * 120.00080 * 180.02562 * 13 12 11 16 16 C 1.46499 * 120.00036 * 359.72107 * 15 13 12 17 17 C 1.46506 * 119.99969 * 180.02562 * 15 13 12 18 18 C 1.50703 * 109.46877 * 269.72057 * 17 15 13 19 19 H 1.08005 * 119.99817 * 0.02562 * 18 17 15 20 20 C 1.37871 * 120.00081 * 179.97438 * 18 17 15 21 21 N 1.31520 * 119.99848 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00321 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46938 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47198 * 120.00527 * 22 20 18 25 25 H 1.48498 * 109.47360 * 240.00281 * 22 20 18 26 26 C 1.46959 * 110.87772 * 59.32159 * 11 10 9 27 27 C 1.46955 * 110.99975 * 303.80125 * 8 7 6 28 28 C 1.39317 * 120.18711 * 0.25665 * 7 6 5 29 29 C 1.36541 * 120.09393 * 359.47751 * 28 7 6 30 30 H 1.09004 * 109.46692 * 270.00023 * 1 2 3 31 31 H 1.08994 * 109.47206 * 29.99442 * 1 2 3 32 32 H 1.08996 * 109.46884 * 150.00244 * 1 2 3 33 33 H 1.08002 * 120.04574 * 0.02562 * 5 4 2 34 34 H 1.08008 * 119.95003 * 180.02562 * 6 5 4 35 35 H 1.08990 * 109.49170 * 63.22205 * 9 8 7 36 36 H 1.08999 * 109.48583 * 303.15327 * 9 8 7 37 37 H 1.08995 * 109.48843 * 181.63413 * 10 9 8 38 38 H 1.08996 * 109.50922 * 61.57420 * 10 9 8 39 39 H 1.09004 * 109.47256 * 50.00565 * 12 11 10 40 40 H 1.08998 * 109.47820 * 290.00375 * 12 11 10 41 41 H 1.09003 * 109.47269 * 270.27384 * 16 15 13 42 42 H 1.08994 * 109.47173 * 30.28203 * 16 15 13 43 43 H 1.09005 * 109.47077 * 150.28374 * 16 15 13 44 44 H 1.09000 * 109.46803 * 29.71536 * 17 15 13 45 45 H 1.09000 * 109.47214 * 149.72329 * 17 15 13 46 46 H 0.96998 * 119.99944 * 179.97438 * 21 20 18 47 47 H 1.09007 * 109.48694 * 60.64644 * 26 11 10 48 48 H 1.09001 * 109.48949 * 180.71065 * 26 11 10 49 49 H 1.09002 * 109.49203 * 296.77870 * 27 8 7 50 50 H 1.09010 * 109.48790 * 56.84128 * 27 8 7 51 51 H 1.08005 * 119.95255 * 179.72610 * 28 7 6 52 52 H 1.08006 * 120.04896 * 180.28616 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0506 0.0000 4 6 2.2409 -1.2708 -0.0006 5 6 3.6419 -1.2731 -0.0011 6 6 4.3207 -2.4578 -0.0022 7 6 3.6222 -3.6632 -0.0032 8 7 4.3167 -4.8660 -0.0049 9 6 3.3919 -6.0081 -0.0064 10 6 4.1930 -7.3099 0.0722 11 7 5.1173 -7.3828 -1.0680 12 6 5.8518 -8.6549 -1.0697 13 6 6.5996 -8.8015 -2.3699 14 8 6.5272 -7.9321 -3.2124 15 7 7.3478 -9.8993 -2.5968 16 6 7.4392 -10.9471 -1.5771 17 6 8.0751 -10.0416 -3.8606 18 6 7.2011 -10.7450 -4.8667 19 1 6.2034 -11.0547 -4.5924 20 6 7.6746 -10.9923 -6.1378 21 7 8.8893 -10.6147 -6.4720 22 14 6.5915 -11.8649 -7.3847 23 1 5.2802 -12.1832 -6.7645 24 1 6.3813 -10.9829 -8.5608 25 1 7.2517 -13.1217 -7.8203 26 6 6.0421 -6.2407 -1.0665 27 6 5.2405 -4.9392 -1.1453 28 6 2.2291 -3.6656 -0.0086 29 6 1.5424 -2.4854 -0.0021 30 1 -0.3633 0.0000 1.0277 31 1 -0.3633 0.8900 -0.5137 32 1 -0.3633 -0.8900 -0.5138 33 1 4.1842 -0.3391 -0.0007 34 1 5.4008 -2.4605 -0.0022 35 1 2.8033 -5.9982 -0.9236 36 1 2.7263 -5.9382 0.8540 37 1 3.5106 -8.1592 0.0420 38 1 4.7606 -7.3323 1.0025 39 1 5.1487 -9.4806 -0.9598 40 1 6.5591 -8.6672 -0.2404 41 1 8.2745 -10.7334 -0.9103 42 1 6.5136 -10.9764 -1.0023 43 1 7.5975 -11.9114 -2.0602 44 1 8.3428 -9.0549 -4.2388 45 1 8.9806 -10.6253 -3.6950 46 1 9.2225 -10.7890 -7.3661 47 1 6.6307 -6.2506 -0.1491 48 1 6.7077 -6.3105 -1.9269 49 1 4.6726 -4.9173 -2.0755 50 1 5.9231 -4.0897 -1.1156 51 1 1.6914 -4.6023 -0.0139 52 1 0.4623 -2.4881 -0.0017 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000024795824.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:28 Heat of formation + Delta-G solvation = -36.050618 kcal Electronic energy + Delta-G solvation = -31573.987940 eV Core-core repulsion = 27345.351748 eV Total energy + Delta-G solvation = -4228.636193 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 359.200 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.71830 -40.83625 -40.20726 -38.70895 -36.67630 -36.12536 -34.71354 -33.00328 -32.35629 -31.52591 -30.79318 -29.84779 -28.56054 -27.24766 -26.15780 -25.30565 -24.33818 -23.49078 -22.83576 -21.22418 -20.49314 -20.00858 -18.76186 -18.68585 -17.90088 -17.35350 -17.14589 -16.90309 -16.62292 -16.44503 -16.04839 -15.93920 -15.83992 -15.64222 -15.41501 -15.23990 -15.07392 -14.69437 -14.51969 -14.32275 -14.00983 -13.81733 -13.55961 -13.50343 -13.42957 -13.12058 -13.06657 -12.99421 -12.90140 -12.88014 -12.69586 -12.53990 -12.35900 -12.27879 -12.18103 -11.97345 -11.75151 -11.64142 -10.84898 -10.73485 -10.64987 -10.46264 -10.09765 -9.41034 -9.25573 -8.92935 -8.22159 -6.36839 -0.36239 0.44354 1.35944 1.38593 1.39116 1.50245 1.88995 2.25387 2.40855 2.54057 2.88672 2.96079 3.07300 3.19810 3.66329 3.71920 3.80775 3.92413 4.01991 4.10408 4.15533 4.22747 4.28873 4.31608 4.38573 4.38897 4.45459 4.48815 4.54641 4.56884 4.67340 4.71294 4.74047 4.74627 4.85882 4.86662 4.97437 4.98865 5.01648 5.04422 5.10747 5.16242 5.23879 5.29159 5.44766 5.57627 5.62939 5.80761 5.84202 5.92153 6.07156 6.10485 6.20312 6.58287 6.71991 6.84469 7.29856 7.55784 8.84759 Molecular weight = 359.20amu Principal moments of inertia in cm(-1) A = 0.016020 B = 0.001775 C = 0.001703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.377773 B =15767.309613 C =16439.142069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.395 3.605 3 O -0.516 6.516 4 C -0.225 4.225 5 C -0.047 4.047 6 C -0.168 4.168 7 C 0.143 3.857 8 N -0.492 5.492 9 C 0.051 3.949 10 C 0.057 3.943 11 N -0.544 5.544 12 C 0.055 3.945 13 C 0.493 3.507 14 O -0.580 6.580 15 N -0.614 5.614 16 C 0.079 3.921 17 C 0.261 3.739 18 C -0.539 4.539 19 H 0.054 0.946 20 C 0.005 3.995 21 N -0.929 5.929 22 Si 0.968 3.032 23 H -0.266 1.266 24 H -0.283 1.283 25 H -0.269 1.269 26 C 0.058 3.942 27 C 0.074 3.926 28 C -0.190 4.190 29 C -0.029 4.029 30 H 0.117 0.883 31 H 0.086 0.914 32 H 0.111 0.889 33 H 0.124 0.876 34 H 0.130 0.870 35 H 0.054 0.946 36 H 0.116 0.884 37 H 0.107 0.893 38 H 0.053 0.947 39 H 0.127 0.873 40 H 0.085 0.915 41 H 0.068 0.932 42 H 0.096 0.904 43 H 0.064 0.936 44 H -0.004 1.004 45 H 0.021 0.979 46 H 0.266 0.734 47 H 0.046 0.954 48 H 0.069 0.931 49 H 0.039 0.961 50 H 0.091 0.909 51 H 0.156 0.844 52 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.586 10.525 21.270 29.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.278 3.722 3 O -0.396 6.396 4 C -0.227 4.227 5 C -0.066 4.066 6 C -0.188 4.188 7 C 0.044 3.956 8 N -0.206 5.206 9 C -0.075 4.075 10 C -0.070 4.070 11 N -0.270 5.270 12 C -0.075 4.075 13 C 0.282 3.718 14 O -0.459 6.459 15 N -0.346 5.346 16 C -0.064 4.064 17 C 0.139 3.861 18 C -0.578 4.578 19 H 0.072 0.928 20 C -0.194 4.194 21 N -0.569 5.569 22 Si 0.792 3.208 23 H -0.190 1.190 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.070 4.070 27 C -0.052 4.052 28 C -0.210 4.210 29 C -0.048 4.048 30 H 0.135 0.865 31 H 0.105 0.895 32 H 0.129 0.871 33 H 0.142 0.858 34 H 0.148 0.852 35 H 0.073 0.927 36 H 0.134 0.866 37 H 0.125 0.875 38 H 0.072 0.928 39 H 0.145 0.855 40 H 0.103 0.897 41 H 0.086 0.914 42 H 0.114 0.886 43 H 0.083 0.917 44 H 0.014 0.986 45 H 0.039 0.961 46 H 0.075 0.925 47 H 0.064 0.936 48 H 0.088 0.912 49 H 0.057 0.943 50 H 0.110 0.890 51 H 0.174 0.826 52 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -17.119 11.384 20.690 29.168 hybrid contribution 0.584 -0.344 -1.115 1.304 sum -16.535 11.040 19.575 27.902 Atomic orbital electron populations 1.22273 0.90582 1.06100 1.06241 1.22985 0.93466 0.86843 0.68866 1.90533 1.73417 1.35843 1.39822 1.20613 0.94311 0.95686 1.12136 1.21071 0.94028 0.98070 0.93450 1.20625 1.00642 0.91002 1.06555 1.19437 0.92732 0.90059 0.93409 1.58912 1.19409 1.01770 1.40518 1.22531 0.94036 0.87886 1.03037 1.22330 0.95357 0.98301 0.91026 1.61728 1.19884 1.01116 1.44246 1.21932 0.98116 0.94150 0.93317 1.21264 0.79443 0.81324 0.89794 1.90611 1.63956 1.42569 1.48807 1.48196 1.47712 1.20254 1.18451 1.21926 1.03220 0.90679 0.90534 1.18710 0.91275 0.95110 0.80997 1.21743 1.00709 1.37667 0.97640 0.92807 1.25876 0.96570 0.96639 1.00286 1.70063 1.17901 1.48021 1.20964 0.85364 0.78901 0.78213 0.78299 1.18988 1.20933 1.19442 1.22178 0.94377 0.89429 1.01005 1.22163 0.94827 0.98130 0.90044 1.21385 0.92461 1.00542 1.06647 1.21421 1.01649 0.89874 0.91831 0.86528 0.89510 0.87079 0.85818 0.85177 0.92726 0.86597 0.87493 0.92830 0.85531 0.89703 0.91351 0.88596 0.91672 0.98570 0.96068 0.92484 0.93566 0.91222 0.94290 0.89041 0.82635 0.81296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.52 9.75 71.24 0.69 -0.83 16 2 C 0.40 6.94 7.21 27.91 0.20 7.14 16 3 O -0.52 -13.49 17.08 -3.12 -0.05 -13.54 16 4 C -0.23 -3.91 5.87 -20.15 -0.12 -4.03 16 5 C -0.05 -0.96 9.54 22.33 0.21 -0.75 16 6 C -0.17 -3.34 9.11 22.13 0.20 -3.14 16 7 C 0.14 2.68 5.63 38.54 0.22 2.90 16 8 N -0.49 -9.55 4.74 -694.76 -3.29 -12.84 16 9 C 0.05 0.80 4.28 86.31 0.37 1.17 16 10 C 0.06 0.95 5.61 86.31 0.48 1.43 16 11 N -0.54 -14.01 4.44 -900.26 -4.00 -18.01 16 12 C 0.06 1.42 4.00 85.56 0.34 1.76 16 13 C 0.49 19.70 7.37 87.66 0.65 20.34 16 14 O -0.58 -29.30 13.92 -3.03 -0.04 -29.34 16 15 N -0.61 -25.26 2.86 -851.11 -2.43 -27.70 16 16 C 0.08 2.18 10.24 127.77 1.31 3.49 16 17 C 0.26 14.02 5.17 85.63 0.44 14.46 16 18 C -0.54 -31.04 9.39 25.60 0.24 -30.80 16 19 H 0.05 3.07 7.81 -2.91 -0.02 3.04 16 20 C 0.00 0.29 5.46 84.65 0.46 0.75 16 21 N -0.93 -56.49 13.29 21.45 0.28 -56.20 16 22 Si 0.97 45.01 29.54 68.60 2.03 47.03 16 23 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 24 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 25 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 26 C 0.06 1.59 5.26 86.31 0.45 2.05 16 27 C 0.07 1.77 5.37 86.31 0.46 2.23 16 28 C -0.19 -2.67 8.74 22.13 0.19 -2.48 16 29 C -0.03 -0.35 9.31 22.33 0.21 -0.15 16 30 H 0.12 0.49 8.14 -2.38 -0.02 0.47 16 31 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.11 0.30 6.45 -2.39 -0.02 0.29 16 33 H 0.12 2.63 7.64 -2.91 -0.02 2.61 16 34 H 0.13 2.47 7.16 -2.91 -0.02 2.45 16 35 H 0.05 0.94 7.55 -2.39 -0.02 0.92 16 36 H 0.12 1.16 7.16 -2.39 -0.02 1.14 16 37 H 0.11 1.34 8.07 -2.39 -0.02 1.32 16 38 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.13 2.56 7.29 -2.39 -0.02 2.54 16 40 H 0.09 1.74 8.08 -2.39 -0.02 1.72 16 41 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.10 1.88 6.45 -2.39 -0.02 1.87 16 43 H 0.06 1.94 8.07 -2.38 -0.02 1.92 16 44 H 0.00 -0.24 7.41 -2.39 -0.02 -0.26 16 45 H 0.02 1.16 8.07 -2.39 -0.02 1.14 16 46 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 47 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 48 H 0.07 2.49 5.85 -2.39 -0.01 2.48 16 49 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 50 H 0.09 2.03 6.79 -2.38 -0.02 2.02 16 51 H 0.16 1.50 5.77 -2.91 -0.02 1.48 16 52 H 0.17 0.70 6.34 -2.91 -0.02 0.68 16 Total: -1.00 -82.81 413.62 0.44 -82.37 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: 0.92 Total: 12.69 kcal Atomic # 6 Polarization: 8.52 SS G_CDS: 7.02 Total: 15.54 kcal Atomic # 7 Polarization: -105.32 SS G_CDS: -9.44 Total: -114.75 kcal Atomic # 8 Polarization: -42.79 SS G_CDS: -0.10 Total: -42.88 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -82.81 0.44 -82.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000024795824.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.321 kcal (2) G-P(sol) polarization free energy of solvation -82.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds