Wall clock time and date at job start Tue Mar 31 2020 06:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47191 * 2 1 4 4 N 1.46902 * 109.47197 * 239.99431 * 2 1 3 5 5 C 1.46906 * 110.99573 * 85.00442 * 4 2 1 6 6 C 1.50699 * 109.46990 * 180.02562 * 5 4 2 7 7 C 1.38287 * 119.92364 * 269.72897 * 6 5 4 8 8 C 1.38103 * 120.07049 * 179.72823 * 7 6 5 9 9 C 1.38907 * 119.92661 * 0.54128 * 8 7 6 10 10 N 1.39675 * 120.07634 * 179.75372 * 9 8 7 11 11 C 1.46499 * 120.00414 * 179.97438 * 10 9 8 12 12 C 1.46507 * 120.00002 * 359.97438 * 10 9 8 13 13 C 1.50700 * 109.47041 * 90.00362 * 12 10 9 14 14 H 1.08006 * 119.99786 * 359.97438 * 13 12 10 15 15 C 1.37878 * 120.00061 * 180.02562 * 13 12 10 16 16 N 1.31510 * 119.99704 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99783 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47353 * 59.99458 * 17 15 13 19 19 H 1.48501 * 109.46883 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.47091 * 299.99458 * 17 15 13 21 21 C 1.38908 * 119.85094 * 359.72850 * 9 8 7 22 22 C 1.38102 * 119.92433 * 0.02562 * 21 9 8 23 23 C 1.50699 * 109.46719 * 120.00116 * 2 1 3 24 24 C 1.38256 * 119.96862 * 79.72472 * 23 2 1 25 25 C 1.38218 * 120.07181 * 179.72831 * 24 23 2 26 26 C 1.38403 * 119.99962 * 0.54414 * 25 24 23 27 27 F 1.35098 * 120.03671 * 179.75490 * 26 25 24 28 28 C 1.38660 * 119.92922 * 359.72805 * 26 25 24 29 29 F 1.35095 * 120.03133 * 180.02562 * 28 26 25 30 30 C 1.38216 * 119.96392 * 259.99623 * 23 2 1 31 31 H 1.09000 * 109.47499 * 300.00664 * 1 2 3 32 32 H 1.09011 * 109.46887 * 60.00236 * 1 2 3 33 33 H 1.08999 * 109.47708 * 180.02562 * 1 2 3 34 34 H 1.00896 * 111.00219 * 208.96081 * 4 2 1 35 35 H 1.09002 * 109.46991 * 299.99841 * 5 4 2 36 36 H 1.09000 * 109.47202 * 60.00133 * 5 4 2 37 37 H 1.08002 * 119.96153 * 359.97438 * 7 6 5 38 38 H 1.08000 * 120.03699 * 180.27158 * 8 7 6 39 39 H 1.09003 * 109.47325 * 89.99569 * 11 10 9 40 40 H 1.08997 * 109.47466 * 209.99730 * 11 10 9 41 41 H 1.09003 * 109.46779 * 329.99603 * 11 10 9 42 42 H 1.08993 * 109.47475 * 210.00456 * 12 10 9 43 43 H 1.08999 * 109.47141 * 330.00800 * 12 10 9 44 44 H 0.97006 * 119.99672 * 180.02562 * 16 15 13 45 45 H 1.08003 * 120.03900 * 179.97438 * 21 9 8 46 46 H 1.08001 * 119.96191 * 179.97438 * 22 21 9 47 47 H 1.08004 * 119.96341 * 0.02562 * 24 23 2 48 48 H 1.08004 * 119.99754 * 180.28144 * 25 24 23 49 49 H 1.08001 * 119.99693 * 0.02764 * 30 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6926 -1.1994 5 6 2.0825 0.2225 -2.3469 6 6 2.5874 -0.5220 -3.5560 7 6 3.9440 -0.5690 -3.8204 8 6 4.4104 -1.2551 -4.9244 9 6 3.5144 -1.8888 -5.7760 10 7 3.9824 -2.5793 -6.8963 11 6 3.0360 -3.2476 -7.7930 12 6 5.4196 -2.6352 -7.1748 13 6 6.0164 -3.8409 -6.4958 14 1 5.3879 -4.4995 -5.9145 15 6 7.3647 -4.1028 -6.6156 16 7 8.1299 -3.3006 -7.3230 17 14 8.1042 -5.5978 -5.7744 18 1 7.4524 -6.8286 -6.2896 19 1 9.5610 -5.6544 -6.0566 20 1 7.8869 -5.4991 -4.3087 21 6 2.1520 -1.8349 -5.5105 22 6 1.6927 -1.1514 -4.4019 23 6 2.0322 -0.7104 1.2305 24 6 2.0609 -2.0922 1.2668 25 6 2.5264 -2.7460 2.3921 26 6 2.9539 -2.0174 3.4885 27 9 3.4043 -2.6557 4.5907 28 6 2.9198 -0.6317 3.4543 29 9 3.3370 0.0815 4.5231 30 6 2.4584 0.0200 2.3237 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8901 33 1 -0.3634 -1.0276 0.0005 34 1 2.9172 -1.1207 -1.0286 35 1 1.0871 0.6162 -2.5525 36 1 2.7590 1.0461 -2.1182 37 1 4.6396 -0.0720 -3.1605 38 1 5.4703 -1.2952 -5.1280 39 1 2.7261 -2.5551 -8.5757 40 1 3.5152 -4.1160 -8.2451 41 1 2.1627 -3.5689 -7.2254 42 1 5.5787 -2.7082 -8.2506 43 1 5.8983 -1.7316 -6.7973 44 1 9.0785 -3.4850 -7.4077 45 1 1.4526 -2.3262 -6.1708 46 1 0.6335 -1.1087 -4.1951 47 1 1.7238 -2.6614 0.4130 48 1 2.5526 -3.8254 2.4174 49 1 2.4309 1.0993 2.2959 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000025361171.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:51 Heat of formation + Delta-G solvation = -33.652930 kcal Electronic energy + Delta-G solvation = -30647.559617 eV Core-core repulsion = 26210.221218 eV Total energy + Delta-G solvation = -4437.338399 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 360.171 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -49.75409 -48.83114 -39.88247 -39.02287 -36.88333 -35.46276 -32.85728 -32.12303 -31.17432 -30.47362 -29.55512 -28.73984 -27.81514 -25.84859 -24.35969 -23.65763 -23.40590 -22.14852 -21.50930 -20.83714 -19.63575 -18.29561 -17.48281 -17.34435 -16.70022 -16.60325 -16.49854 -15.88683 -15.43423 -15.24626 -15.08174 -14.80371 -14.73838 -14.38867 -14.28559 -14.23422 -13.73311 -13.65643 -13.32462 -13.19179 -12.97772 -12.89752 -12.63294 -12.33376 -12.19711 -12.12451 -11.89024 -11.74086 -11.69594 -11.43340 -11.26776 -11.12811 -10.97987 -10.73281 -10.68952 -10.30000 -9.92380 -9.79230 -9.44115 -8.98832 -8.88232 -8.55114 -8.52875 -8.29864 -6.49951 -6.04601 -4.20197 0.53959 0.63755 2.07805 2.17686 2.98571 3.26167 3.30851 3.33917 3.43054 3.85280 4.09527 4.12562 4.18007 4.30673 4.38860 4.58769 4.68635 4.77737 4.90438 5.04495 5.18879 5.20072 5.31588 5.34208 5.42106 5.45796 5.55391 5.55547 5.58650 5.66302 5.73493 5.75530 5.79799 5.97036 5.98188 6.03773 6.05374 6.25550 6.35953 6.39263 6.40174 6.61269 6.83952 6.94835 7.01970 7.16390 7.19393 7.27536 7.34992 7.56969 7.78191 8.12580 8.23501 8.45578 8.88558 9.46748 10.93028 Molecular weight = 360.17amu Principal moments of inertia in cm(-1) A = 0.009215 B = 0.002187 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3037.888943 B =12800.808903 C =14920.940127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.123 3.877 3 H 0.055 0.945 4 N -0.678 5.678 5 C 0.116 3.884 6 C -0.175 4.175 7 C -0.067 4.067 8 C -0.187 4.187 9 C 0.243 3.757 10 N -0.615 5.615 11 C 0.098 3.902 12 C 0.249 3.751 13 C -0.532 4.532 14 H 0.059 0.941 15 C 0.062 3.938 16 N -0.895 5.895 17 Si 0.896 3.104 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.275 1.275 21 C -0.223 4.223 22 C -0.050 4.050 23 C -0.069 4.069 24 C -0.079 4.079 25 C -0.125 4.125 26 C 0.064 3.936 27 F -0.131 7.131 28 C 0.065 3.935 29 F -0.131 7.131 30 C -0.121 4.121 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.346 0.654 35 H 0.073 0.927 36 H 0.031 0.969 37 H 0.107 0.893 38 H 0.131 0.869 39 H 0.036 0.964 40 H 0.067 0.933 41 H 0.055 0.945 42 H 0.030 0.970 43 H 0.036 0.964 44 H 0.265 0.735 45 H 0.113 0.887 46 H 0.109 0.891 47 H 0.152 0.848 48 H 0.147 0.853 49 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.473 7.180 15.846 23.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.013 3.987 3 H 0.073 0.927 4 N -0.311 5.311 5 C -0.012 4.012 6 C -0.178 4.178 7 C -0.086 4.086 8 C -0.210 4.210 9 C 0.135 3.865 10 N -0.320 5.320 11 C -0.046 4.046 12 C 0.129 3.871 13 C -0.571 4.571 14 H 0.077 0.923 15 C -0.140 4.140 16 N -0.534 5.534 17 Si 0.724 3.276 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.201 1.201 21 C -0.246 4.246 22 C -0.069 4.069 23 C -0.070 4.070 24 C -0.097 4.097 25 C -0.143 4.143 26 C 0.044 3.956 27 F -0.109 7.109 28 C 0.045 3.955 29 F -0.109 7.109 30 C -0.140 4.140 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.166 0.834 35 H 0.091 0.909 36 H 0.049 0.951 37 H 0.125 0.875 38 H 0.149 0.851 39 H 0.054 0.946 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.048 0.952 43 H 0.053 0.947 44 H 0.074 0.926 45 H 0.131 0.869 46 H 0.127 0.873 47 H 0.170 0.830 48 H 0.165 0.835 49 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -15.766 6.850 15.477 23.130 hybrid contribution 1.605 -0.431 1.093 1.989 sum -14.161 6.419 16.570 22.722 Atomic orbital electron populations 1.21800 0.93160 1.02908 1.01501 1.20465 0.96371 0.95324 0.86527 0.92687 1.60747 1.34157 1.33093 1.03084 1.20702 0.99981 0.92257 0.88227 1.19121 0.93311 1.06929 0.98455 1.20657 0.94273 0.97445 0.96241 1.20845 1.00159 1.03166 0.96823 1.17971 0.92120 0.89473 0.86928 1.47117 1.08056 1.53223 1.23643 1.21478 0.93106 0.96899 0.93132 1.19283 0.73782 0.97394 0.96617 1.21536 0.93386 1.10238 1.31920 0.92304 1.24960 0.96973 0.96835 0.95271 1.69920 1.05993 1.37470 1.40037 0.86582 0.77936 0.82968 0.80133 1.20218 1.21184 1.20079 1.20575 0.93741 1.08528 1.01774 1.20476 0.98130 0.95163 0.93156 1.19923 0.97975 0.93902 0.95227 1.21124 0.96962 0.93822 0.97790 1.21190 0.99874 1.01378 0.91892 1.17767 1.03264 0.88880 0.85702 1.91531 1.86817 1.81652 1.50910 1.17624 1.03753 0.87885 0.86251 1.91528 1.87947 1.77825 1.53605 1.20959 1.00303 1.01254 0.91524 0.92612 0.91952 0.91567 0.83426 0.90906 0.95097 0.87505 0.85145 0.94601 0.91450 0.92636 0.95209 0.94654 0.92570 0.86914 0.87297 0.83011 0.83479 0.83807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.39 37.16 0.35 -0.62 16 2 C 0.12 0.96 2.82 -68.86 -0.19 0.77 16 3 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 4 N -0.68 -6.58 5.69 -109.22 -0.62 -7.20 16 5 C 0.12 1.25 5.61 -4.97 -0.03 1.22 16 6 C -0.18 -2.46 5.40 -104.59 -0.56 -3.03 16 7 C -0.07 -1.07 9.69 -39.61 -0.38 -1.45 16 8 C -0.19 -3.64 9.21 -39.38 -0.36 -4.00 16 9 C 0.24 4.74 6.55 -83.79 -0.55 4.19 16 10 N -0.61 -12.86 2.99 -181.00 -0.54 -13.40 16 11 C 0.10 1.68 10.19 59.85 0.61 2.29 16 12 C 0.25 6.14 4.91 -5.19 -0.03 6.11 16 13 C -0.53 -14.29 9.39 -34.44 -0.32 -14.62 16 14 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.90 -25.39 13.29 55.43 0.74 -24.66 16 17 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 C -0.22 -3.71 9.21 -39.38 -0.36 -4.07 16 22 C -0.05 -0.73 9.69 -39.62 -0.38 -1.11 16 23 C -0.07 -0.56 4.71 -104.62 -0.49 -1.05 16 24 C -0.08 -0.64 9.01 -39.58 -0.36 -0.99 16 25 C -0.12 -1.04 10.02 -39.53 -0.40 -1.44 16 26 C 0.06 0.65 7.31 -39.36 -0.29 0.36 16 27 F -0.13 -1.48 17.18 2.25 0.04 -1.44 16 28 C 0.07 0.65 7.31 -39.36 -0.29 0.36 16 29 F -0.13 -1.44 17.18 2.25 0.04 -1.40 16 30 C -0.12 -0.99 9.65 -39.53 -0.38 -1.37 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.44 7.45 -51.92 -0.39 0.06 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.35 3.61 7.99 -39.29 -0.31 3.30 16 35 H 0.07 0.72 7.38 -51.93 -0.38 0.34 16 36 H 0.03 0.32 8.00 -51.93 -0.42 -0.10 16 37 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 38 H 0.13 2.83 6.14 -52.49 -0.32 2.51 16 39 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 41 H 0.06 0.84 6.20 -51.93 -0.32 0.52 16 42 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16 43 H 0.04 0.92 6.20 -51.93 -0.32 0.60 16 44 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 45 H 0.11 1.70 6.14 -52.48 -0.32 1.38 16 46 H 0.11 1.35 8.06 -52.49 -0.42 0.92 16 47 H 0.15 1.17 7.72 -52.48 -0.41 0.77 16 48 H 0.15 0.98 8.06 -52.48 -0.42 0.56 16 49 H 0.14 0.92 8.04 -52.49 -0.42 0.50 16 LS Contribution 412.47 15.07 6.22 6.22 Total: -1.00 -28.72 412.47 -10.60 -39.33 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -6.93 Total: 3.38 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: -4.52 Total: -16.88 kcal Atomic # 7 Polarization: -44.83 SS G_CDS: -0.43 Total: -45.26 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.08 Total: -2.84 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -28.72 -10.60 -39.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025361171.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.675 kcal (2) G-P(sol) polarization free energy of solvation -28.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds