Wall clock time and date at job start Tue Mar 31 2020 06:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47191 * 2 1 4 4 N 1.46902 * 109.47197 * 239.99431 * 2 1 3 5 5 C 1.46906 * 110.99573 * 85.00442 * 4 2 1 6 6 C 1.50699 * 109.46990 * 180.02562 * 5 4 2 7 7 C 1.38287 * 119.92364 * 269.72897 * 6 5 4 8 8 C 1.38103 * 120.07049 * 179.72823 * 7 6 5 9 9 C 1.38907 * 119.92661 * 0.54128 * 8 7 6 10 10 N 1.39675 * 120.07634 * 179.75372 * 9 8 7 11 11 C 1.46499 * 120.00414 * 179.97438 * 10 9 8 12 12 C 1.46507 * 120.00002 * 359.97438 * 10 9 8 13 13 C 1.50700 * 109.47041 * 90.00362 * 12 10 9 14 14 H 1.08006 * 119.99786 * 359.97438 * 13 12 10 15 15 C 1.37878 * 120.00061 * 180.02562 * 13 12 10 16 16 N 1.31510 * 119.99704 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99783 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47353 * 59.99458 * 17 15 13 19 19 H 1.48501 * 109.46883 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.47091 * 299.99458 * 17 15 13 21 21 C 1.38908 * 119.85094 * 359.72850 * 9 8 7 22 22 C 1.38102 * 119.92433 * 0.02562 * 21 9 8 23 23 C 1.50699 * 109.46719 * 120.00116 * 2 1 3 24 24 C 1.38256 * 119.96862 * 79.72472 * 23 2 1 25 25 C 1.38218 * 120.07181 * 179.72831 * 24 23 2 26 26 C 1.38403 * 119.99962 * 0.54414 * 25 24 23 27 27 F 1.35098 * 120.03671 * 179.75490 * 26 25 24 28 28 C 1.38660 * 119.92922 * 359.72805 * 26 25 24 29 29 F 1.35095 * 120.03133 * 180.02562 * 28 26 25 30 30 C 1.38216 * 119.96392 * 259.99623 * 23 2 1 31 31 H 1.09000 * 109.47499 * 300.00664 * 1 2 3 32 32 H 1.09011 * 109.46887 * 60.00236 * 1 2 3 33 33 H 1.08999 * 109.47708 * 180.02562 * 1 2 3 34 34 H 1.00896 * 111.00219 * 208.96081 * 4 2 1 35 35 H 1.09002 * 109.46991 * 299.99841 * 5 4 2 36 36 H 1.09000 * 109.47202 * 60.00133 * 5 4 2 37 37 H 1.08002 * 119.96153 * 359.97438 * 7 6 5 38 38 H 1.08000 * 120.03699 * 180.27158 * 8 7 6 39 39 H 1.09003 * 109.47325 * 89.99569 * 11 10 9 40 40 H 1.08997 * 109.47466 * 209.99730 * 11 10 9 41 41 H 1.09003 * 109.46779 * 329.99603 * 11 10 9 42 42 H 1.08993 * 109.47475 * 210.00456 * 12 10 9 43 43 H 1.08999 * 109.47141 * 330.00800 * 12 10 9 44 44 H 0.97006 * 119.99672 * 180.02562 * 16 15 13 45 45 H 1.08003 * 120.03900 * 179.97438 * 21 9 8 46 46 H 1.08001 * 119.96191 * 179.97438 * 22 21 9 47 47 H 1.08004 * 119.96341 * 0.02562 * 24 23 2 48 48 H 1.08004 * 119.99754 * 180.28144 * 25 24 23 49 49 H 1.08001 * 119.99693 * 0.02764 * 30 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6926 -1.1994 5 6 2.0825 0.2225 -2.3469 6 6 2.5874 -0.5220 -3.5560 7 6 3.9440 -0.5690 -3.8204 8 6 4.4104 -1.2551 -4.9244 9 6 3.5144 -1.8888 -5.7760 10 7 3.9824 -2.5793 -6.8963 11 6 3.0360 -3.2476 -7.7930 12 6 5.4196 -2.6352 -7.1748 13 6 6.0164 -3.8409 -6.4958 14 1 5.3879 -4.4995 -5.9145 15 6 7.3647 -4.1028 -6.6156 16 7 8.1299 -3.3006 -7.3230 17 14 8.1042 -5.5978 -5.7744 18 1 7.4524 -6.8286 -6.2896 19 1 9.5610 -5.6544 -6.0566 20 1 7.8869 -5.4991 -4.3087 21 6 2.1520 -1.8349 -5.5105 22 6 1.6927 -1.1514 -4.4019 23 6 2.0322 -0.7104 1.2305 24 6 2.0609 -2.0922 1.2668 25 6 2.5264 -2.7460 2.3921 26 6 2.9539 -2.0174 3.4885 27 9 3.4043 -2.6557 4.5907 28 6 2.9198 -0.6317 3.4543 29 9 3.3370 0.0815 4.5231 30 6 2.4584 0.0200 2.3237 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8901 33 1 -0.3634 -1.0276 0.0005 34 1 2.9172 -1.1207 -1.0286 35 1 1.0871 0.6162 -2.5525 36 1 2.7590 1.0461 -2.1182 37 1 4.6396 -0.0720 -3.1605 38 1 5.4703 -1.2952 -5.1280 39 1 2.7261 -2.5551 -8.5757 40 1 3.5152 -4.1160 -8.2451 41 1 2.1627 -3.5689 -7.2254 42 1 5.5787 -2.7082 -8.2506 43 1 5.8983 -1.7316 -6.7973 44 1 9.0785 -3.4850 -7.4077 45 1 1.4526 -2.3262 -6.1708 46 1 0.6335 -1.1087 -4.1951 47 1 1.7238 -2.6614 0.4130 48 1 2.5526 -3.8254 2.4174 49 1 2.4309 1.0993 2.2959 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000025361171.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:50 Heat of formation + Delta-G solvation = -46.738625 kcal Electronic energy + Delta-G solvation = -30648.127055 eV Core-core repulsion = 26210.221218 eV Total energy + Delta-G solvation = -4437.905837 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 360.171 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -50.54067 -49.62714 -40.63753 -40.25606 -37.92086 -36.66794 -34.77740 -33.09585 -31.87715 -31.83687 -30.53295 -29.70486 -29.39457 -27.11338 -25.74234 -24.47183 -24.29745 -23.42087 -22.90691 -21.49801 -20.98695 -19.05031 -18.62246 -18.23904 -18.17800 -17.89436 -17.38103 -16.99564 -16.60451 -16.32027 -16.05749 -15.87490 -15.65481 -15.52019 -15.35662 -15.17160 -14.98090 -14.77310 -14.52543 -14.25738 -14.06137 -13.96428 -13.81500 -13.39069 -13.21870 -13.14823 -13.09315 -12.98361 -12.74531 -12.65342 -12.51337 -12.46930 -12.40283 -12.16566 -11.84748 -11.78341 -11.68889 -11.35615 -10.63606 -10.38392 -10.09551 -9.67887 -9.61531 -9.29714 -8.35106 -7.77260 -6.36847 -0.15809 -0.01205 0.76225 0.89358 1.37794 1.39257 1.47576 2.32316 2.34812 2.66369 2.74538 3.02170 3.06873 3.26058 3.44907 3.56660 3.67872 4.03089 4.10642 4.15152 4.18285 4.28837 4.32565 4.45112 4.50469 4.60979 4.68343 4.72286 4.75369 4.77436 4.80195 4.85979 4.90257 4.94727 5.04471 5.05084 5.08133 5.12955 5.17801 5.22635 5.33863 5.38061 5.48891 5.61796 5.72300 5.72991 5.73180 5.97238 6.08158 6.16420 6.28713 6.47716 6.52340 6.84132 6.97431 7.35153 8.83598 Molecular weight = 360.17amu Principal moments of inertia in cm(-1) A = 0.009215 B = 0.002187 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3037.888943 B =12800.808903 C =14920.940127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.127 3.873 3 H 0.067 0.933 4 N -0.681 5.681 5 C 0.121 3.879 6 C -0.157 4.157 7 C -0.068 4.068 8 C -0.217 4.217 9 C 0.211 3.789 10 N -0.633 5.633 11 C 0.098 3.902 12 C 0.267 3.733 13 C -0.540 4.540 14 H 0.049 0.951 15 C 0.013 3.987 16 N -0.927 5.927 17 Si 0.960 3.040 18 H -0.268 1.268 19 H -0.280 1.280 20 H -0.272 1.272 21 C -0.219 4.219 22 C -0.046 4.046 23 C -0.066 4.066 24 C -0.077 4.077 25 C -0.123 4.123 26 C 0.044 3.956 27 F -0.143 7.143 28 C 0.048 3.952 29 F -0.142 7.142 30 C -0.115 4.115 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.342 0.658 35 H 0.091 0.909 36 H 0.039 0.961 37 H 0.121 0.879 38 H 0.091 0.909 39 H 0.052 0.948 40 H 0.054 0.946 41 H 0.079 0.921 42 H 0.008 0.992 43 H 0.010 0.990 44 H 0.267 0.733 45 H 0.131 0.869 46 H 0.143 0.857 47 H 0.159 0.841 48 H 0.162 0.838 49 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.007 7.449 17.098 25.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.018 3.982 3 H 0.085 0.915 4 N -0.313 5.313 5 C -0.007 4.007 6 C -0.159 4.159 7 C -0.087 4.087 8 C -0.240 4.240 9 C 0.106 3.894 10 N -0.341 5.341 11 C -0.045 4.045 12 C 0.145 3.855 13 C -0.579 4.579 14 H 0.068 0.932 15 C -0.187 4.187 16 N -0.567 5.567 17 Si 0.785 3.215 18 H -0.193 1.193 19 H -0.205 1.205 20 H -0.198 1.198 21 C -0.241 4.241 22 C -0.065 4.065 23 C -0.067 4.067 24 C -0.095 4.095 25 C -0.141 4.141 26 C 0.024 3.976 27 F -0.122 7.122 28 C 0.028 3.972 29 F -0.120 7.120 30 C -0.134 4.134 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.161 0.839 35 H 0.110 0.890 36 H 0.057 0.943 37 H 0.139 0.861 38 H 0.109 0.891 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.097 0.903 42 H 0.026 0.974 43 H 0.028 0.972 44 H 0.076 0.924 45 H 0.148 0.852 46 H 0.161 0.839 47 H 0.176 0.824 48 H 0.180 0.820 49 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -18.344 7.133 16.750 25.845 hybrid contribution 2.291 -0.418 0.775 2.454 sum -16.053 6.715 17.525 24.696 Atomic orbital electron populations 1.21792 0.92289 1.02816 1.02257 1.20491 0.96860 0.95524 0.85321 0.91542 1.60718 1.33927 1.33117 1.03582 1.20691 1.01013 0.91993 0.87025 1.19498 0.92160 1.05146 0.99118 1.20835 0.95863 0.96836 0.95210 1.20741 0.98488 1.05758 0.99040 1.18254 0.93570 0.90603 0.86971 1.46959 1.06730 1.55098 1.25290 1.21592 0.92929 0.96622 0.93328 1.18750 0.76573 0.95539 0.94609 1.21747 0.93716 1.10670 1.31748 0.93235 1.25775 0.97406 0.99627 0.95858 1.70031 1.06271 1.39139 1.41286 0.85577 0.77300 0.79628 0.79008 1.19339 1.20510 1.19769 1.20821 0.92388 1.08339 1.02586 1.20888 0.99909 0.93715 0.91960 1.20001 0.97548 0.93883 0.95291 1.21245 0.96499 0.94050 0.97704 1.21365 0.99232 1.02168 0.91373 1.18048 1.04328 0.89243 0.85965 1.91492 1.87157 1.81903 1.51648 1.17873 1.04722 0.87965 0.86653 1.91495 1.88240 1.78035 1.54264 1.21132 0.99301 1.02235 0.90733 0.91590 0.91524 0.92089 0.83934 0.89034 0.94255 0.86090 0.89053 0.93002 0.92682 0.90254 0.97442 0.97181 0.92415 0.85170 0.83896 0.82352 0.82035 0.81900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.38 9.39 71.98 0.68 -0.70 16 2 C 0.13 1.51 2.82 44.17 0.12 1.64 16 3 H 0.07 0.70 7.66 -2.39 -0.02 0.68 16 4 N -0.68 -10.69 5.69 -499.45 -2.84 -13.53 16 5 C 0.12 2.09 5.61 85.56 0.48 2.57 16 6 C -0.16 -3.93 5.40 -19.84 -0.11 -4.04 16 7 C -0.07 -2.13 9.69 22.25 0.22 -1.91 16 8 C -0.22 -8.76 9.21 22.40 0.21 -8.55 16 9 C 0.21 8.32 6.55 38.21 0.25 8.57 16 10 N -0.63 -27.29 2.99 -726.56 -2.17 -29.46 16 11 C 0.10 3.35 10.19 127.77 1.30 4.66 16 12 C 0.27 13.95 4.91 85.63 0.42 14.37 16 13 C -0.54 -30.16 9.39 25.60 0.24 -29.92 16 14 H 0.05 2.80 7.81 -2.91 -0.02 2.77 16 15 C 0.01 0.70 5.46 84.66 0.46 1.16 16 16 N -0.93 -54.38 13.29 21.45 0.28 -54.09 16 17 Si 0.96 43.84 29.54 68.60 2.03 45.86 16 18 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 19 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 20 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 21 C -0.22 -6.81 9.21 22.40 0.21 -6.61 16 22 C -0.05 -1.17 9.69 22.25 0.22 -0.95 16 23 C -0.07 -0.89 4.71 -19.87 -0.09 -0.98 16 24 C -0.08 -1.07 9.01 22.27 0.20 -0.87 16 25 C -0.12 -1.88 10.02 22.30 0.22 -1.66 16 26 C 0.04 0.86 7.31 22.41 0.16 1.03 16 27 F -0.14 -3.25 17.18 44.97 0.77 -2.48 16 28 C 0.05 0.91 7.31 22.41 0.16 1.07 16 29 F -0.14 -3.08 17.18 44.97 0.77 -2.31 16 30 C -0.11 -1.63 9.65 22.30 0.22 -1.41 16 31 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.07 0.65 7.45 -2.38 -0.02 0.64 16 33 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.34 6.07 7.99 -89.70 -0.72 5.36 16 35 H 0.09 1.32 7.38 -2.39 -0.02 1.30 16 36 H 0.04 0.65 8.00 -2.39 -0.02 0.63 16 37 H 0.12 3.32 8.06 -2.91 -0.02 3.30 16 38 H 0.09 4.33 6.14 -2.91 -0.02 4.31 16 39 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.05 1.97 8.07 -2.39 -0.02 1.95 16 41 H 0.08 2.27 6.20 -2.39 -0.01 2.26 16 42 H 0.01 0.42 8.07 -2.39 -0.02 0.40 16 43 H 0.01 0.58 6.20 -2.39 -0.01 0.56 16 44 H 0.27 14.77 8.31 -92.70 -0.77 14.00 16 45 H 0.13 3.54 6.14 -2.91 -0.02 3.52 16 46 H 0.14 2.75 8.06 -2.91 -0.02 2.73 16 47 H 0.16 2.02 7.72 -2.91 -0.02 1.99 16 48 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 49 H 0.16 1.61 8.04 -2.91 -0.02 1.59 16 Total: -1.00 -64.91 412.47 4.67 -60.24 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: 0.26 Total: 18.30 kcal Atomic # 6 Polarization: -28.09 SS G_CDS: 5.57 Total: -22.53 kcal Atomic # 7 Polarization: -92.36 SS G_CDS: -4.73 Total: -97.09 kcal Atomic # 9 Polarization: -6.33 SS G_CDS: 1.55 Total: -4.78 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Total: -64.91 4.67 -60.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025361171.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.498 kcal (2) G-P(sol) polarization free energy of solvation -64.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds