Wall clock time and date at job start Tue Mar 31 2020 05:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99716 * 2 1 4 4 H 1.48498 * 109.47272 * 269.99796 * 3 2 1 5 5 H 1.48504 * 109.47124 * 30.00358 * 3 2 1 6 6 H 1.48505 * 109.47091 * 149.99923 * 3 2 1 7 7 C 1.37874 * 120.00061 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00293 * 0.02562 * 7 2 1 9 9 C 1.50707 * 119.99880 * 180.02562 * 7 2 1 10 10 N 1.46501 * 109.47075 * 180.02562 * 9 7 2 11 11 C 1.34776 * 119.99827 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00161 * 359.97438 * 11 10 9 13 13 C 1.50695 * 119.99771 * 179.97438 * 11 10 9 14 14 N 1.46903 * 109.47109 * 180.02562 * 13 11 10 15 15 C 1.46846 * 110.99717 * 293.95096 * 14 13 11 16 16 C 1.53036 * 109.52384 * 174.15896 * 15 14 13 17 17 C 1.53123 * 109.27788 * 59.18000 * 16 15 14 18 18 C 1.53124 * 109.15980 * 302.34618 * 17 16 15 19 19 C 1.46842 * 111.00077 * 169.74395 * 14 13 11 20 20 H 1.08991 * 109.46739 * 65.83356 * 19 14 13 21 21 C 1.50704 * 109.46289 * 305.85032 * 19 14 13 22 22 N 1.27931 * 124.23784 * 314.70427 * 21 19 14 23 23 C 1.34669 * 117.84407 * 179.76733 * 22 21 19 24 24 C 1.40965 * 129.68730 * 180.18732 * 23 22 21 25 25 C 1.36172 * 120.42258 * 180.31185 * 24 23 22 26 26 C 1.38796 * 120.78154 * 0.02562 * 25 24 23 27 27 C 1.37653 * 120.06393 * 359.97438 * 26 25 24 28 28 C 1.39333 * 119.95553 * 0.02562 * 27 26 25 29 29 S 1.70649 * 124.23661 * 134.99837 * 21 19 14 30 30 H 0.96992 * 120.00160 * 359.97438 * 1 2 3 31 31 H 1.08994 * 109.46914 * 59.99837 * 9 7 2 32 32 H 1.09006 * 109.46837 * 300.00239 * 9 7 2 33 33 H 0.96994 * 119.99941 * 359.97438 * 10 9 7 34 34 H 1.08994 * 109.47720 * 59.99882 * 13 11 10 35 35 H 1.09006 * 109.47201 * 299.99567 * 13 11 10 36 36 H 1.08999 * 109.46089 * 54.14588 * 15 14 13 37 37 H 1.08994 * 109.45639 * 294.17306 * 15 14 13 38 38 H 1.09000 * 109.50632 * 179.12292 * 16 15 14 39 39 H 1.09006 * 109.50216 * 299.24086 * 16 15 14 40 40 H 1.09000 * 109.52181 * 62.25097 * 17 16 15 41 41 H 1.08997 * 109.52376 * 182.44203 * 17 16 15 42 42 H 1.08997 * 109.50272 * 297.71554 * 18 17 16 43 43 H 1.08997 * 109.53375 * 177.61494 * 18 17 16 44 44 H 1.07993 * 119.78853 * 0.32790 * 24 23 22 45 45 H 1.08008 * 119.61296 * 179.97438 * 25 24 23 46 46 H 1.08001 * 119.96455 * 180.02562 * 26 25 24 47 47 H 1.08004 * 120.01780 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 7 4.0000 -2.5752 0.0010 11 6 5.3251 -2.8214 0.0020 12 8 6.1132 -1.8995 0.0025 13 6 5.8274 -4.2421 0.0024 14 7 7.2964 -4.2421 0.0041 15 6 7.8240 -3.6855 -1.2481 16 6 9.3468 -3.5662 -1.1533 17 6 9.9473 -4.9510 -0.8955 18 6 9.3452 -5.5288 0.3883 19 6 7.8224 -5.5911 0.2487 20 1 7.5608 -6.2400 -0.5870 21 6 7.2240 -6.1409 1.5179 22 7 7.1195 -5.4813 2.6090 23 6 6.5581 -6.0988 3.6660 24 6 6.3183 -5.6151 4.9681 25 6 5.7363 -6.4145 5.9044 26 6 5.3692 -7.7173 5.5969 27 6 5.5913 -8.2164 4.3334 28 6 6.1856 -7.4129 3.3625 29 16 6.6075 -7.7237 1.6815 30 1 -0.4850 0.8400 0.0004 31 1 3.8745 -0.6799 0.8911 32 1 3.8753 -0.6803 -0.8889 33 1 3.3697 -3.3124 0.0010 34 1 5.4648 -4.7561 -0.8877 35 1 5.4635 -4.7559 0.8923 36 1 7.3924 -2.6990 -1.4173 37 1 7.5622 -4.3434 -2.0767 38 1 9.7396 -3.1676 -2.0886 39 1 9.6091 -2.8975 -0.3334 40 1 9.7181 -5.6091 -1.7336 41 1 11.0281 -4.8644 -0.7841 42 1 9.6074 -4.8909 1.2324 43 1 9.7367 -6.5323 0.5550 44 1 6.5976 -4.6040 5.2248 45 1 5.5590 -6.0306 6.8982 46 1 4.9081 -8.3397 6.3495 47 1 5.3049 -9.2301 4.0948 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000027372126.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:54 Heat of formation + Delta-G solvation = 27.815884 kcal Electronic energy + Delta-G solvation = -29564.390876 eV Core-core repulsion = 25645.443919 eV Total energy + Delta-G solvation = -3918.946957 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 359.141 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.76542 -39.69964 -38.29202 -36.86677 -34.29230 -33.54994 -32.32012 -31.96328 -31.35695 -29.28909 -28.75459 -26.83460 -25.34615 -23.60250 -23.46930 -22.48965 -21.81669 -20.97817 -19.82625 -19.57418 -18.73662 -17.27314 -16.90772 -16.36428 -16.03265 -15.59496 -15.51165 -15.30250 -14.91125 -14.78626 -14.54518 -14.36263 -14.16808 -13.97865 -13.68385 -13.54925 -13.10171 -12.83116 -12.70983 -12.59402 -12.44879 -12.21181 -12.14317 -11.97541 -11.56986 -11.37197 -11.12121 -10.99399 -10.85821 -10.77951 -10.74528 -10.49019 -10.35434 -9.94590 -9.65851 -9.47558 -9.10449 -8.85351 -8.75574 -8.34948 -8.29349 -8.06736 -6.19837 -4.21826 0.18155 0.90865 0.98253 1.47899 2.15285 3.26783 3.29998 3.34523 3.44316 3.46375 3.51627 3.63994 4.19016 4.34117 4.35758 4.52396 4.64568 4.69974 4.78013 4.88834 4.97125 5.05619 5.07935 5.10546 5.15471 5.28678 5.30488 5.36611 5.44891 5.52230 5.60073 5.64668 5.73359 5.78039 5.82444 5.88707 5.96563 6.04955 6.13400 6.19797 6.32580 6.44714 6.79192 6.95214 7.02494 7.10865 7.27873 7.42580 7.52476 8.17108 8.55246 8.77776 8.99895 9.40655 10.92196 Molecular weight = 359.14amu Principal moments of inertia in cm(-1) A = 0.008284 B = 0.003258 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3379.213018 B = 8592.124950 C =11015.173151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.078 3.922 3 Si 0.876 3.124 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.543 4.543 8 H 0.079 0.921 9 C 0.223 3.777 10 N -0.708 5.708 11 C 0.506 3.494 12 O -0.537 6.537 13 C 0.036 3.964 14 N -0.496 5.496 15 C 0.051 3.949 16 C -0.115 4.115 17 C -0.119 4.119 18 C -0.104 4.104 19 C 0.162 3.838 20 H 0.062 0.938 21 C 0.098 3.902 22 N -0.430 5.430 23 C 0.082 3.918 24 C -0.058 4.058 25 C -0.109 4.109 26 C -0.101 4.101 27 C -0.074 4.074 28 C -0.180 4.180 29 S 0.084 5.916 30 H 0.267 0.733 31 H 0.025 0.975 32 H 0.020 0.980 33 H 0.394 0.606 34 H 0.059 0.941 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.028 0.972 38 H 0.067 0.933 39 H 0.076 0.924 40 H 0.060 0.940 41 H 0.068 0.932 42 H 0.083 0.917 43 H 0.068 0.932 44 H 0.136 0.864 45 H 0.135 0.865 46 H 0.134 0.866 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.396 -20.245 5.043 27.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.581 4.581 8 H 0.097 0.903 9 C 0.101 3.899 10 N -0.358 5.358 11 C 0.290 3.710 12 O -0.415 6.415 13 C -0.096 4.096 14 N -0.222 5.222 15 C -0.076 4.076 16 C -0.153 4.153 17 C -0.157 4.157 18 C -0.143 4.143 19 C 0.050 3.950 20 H 0.080 0.920 21 C -0.188 4.188 22 N -0.142 5.142 23 C -0.038 4.038 24 C -0.078 4.078 25 C -0.130 4.130 26 C -0.123 4.123 27 C -0.097 4.097 28 C -0.299 4.299 29 S 0.341 5.659 30 H 0.077 0.923 31 H 0.043 0.957 32 H 0.038 0.962 33 H 0.227 0.773 34 H 0.077 0.923 35 H 0.112 0.888 36 H 0.122 0.878 37 H 0.046 0.954 38 H 0.086 0.914 39 H 0.095 0.905 40 H 0.078 0.922 41 H 0.087 0.913 42 H 0.101 0.899 43 H 0.087 0.913 44 H 0.154 0.846 45 H 0.153 0.847 46 H 0.152 0.848 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 18.069 -19.403 4.703 26.927 hybrid contribution -0.650 0.308 0.237 0.757 sum 17.418 -19.096 4.939 26.314 Atomic orbital electron populations 1.69881 1.06215 1.27397 1.49568 1.24792 0.94780 0.99157 0.93866 0.86820 0.80653 0.83226 0.79029 1.19864 1.20900 1.18437 1.21103 0.88584 0.95190 1.53193 0.90332 1.19458 0.95126 0.78609 0.96694 1.46155 1.05599 1.10980 1.73033 1.20181 0.83058 0.90327 0.77444 1.90614 1.55174 1.45855 1.49834 1.22000 0.88815 0.96431 1.02335 1.61487 1.05632 1.18585 1.36452 1.22346 0.95726 1.01658 0.87873 1.21574 0.94388 0.96970 1.02360 1.21601 1.00097 0.97121 0.96848 1.21610 0.91180 1.01631 0.99861 1.20321 0.95597 0.90006 0.89107 0.92035 1.26634 1.00554 0.93677 0.97967 1.66169 1.15051 1.34861 0.98090 1.19317 1.00343 0.89575 0.94581 1.20484 0.97457 1.00534 0.89373 1.20762 0.98470 0.93989 0.99731 1.21151 0.99345 0.95909 0.95886 1.20325 0.98475 0.99043 0.91841 1.23877 1.08466 0.99219 0.98312 1.83900 1.60632 1.16021 1.05348 0.92290 0.95736 0.96249 0.77262 0.92342 0.88825 0.87801 0.95410 0.91405 0.90540 0.92162 0.91337 0.89852 0.91350 0.84570 0.84701 0.84768 0.85260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.81 13.96 55.43 0.77 -26.04 16 2 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 3 Si 0.88 21.78 27.47 -169.99 -4.67 17.11 16 4 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.26 -6.47 6.54 56.52 0.37 -6.10 16 7 C -0.54 -15.17 9.83 -34.44 -0.34 -15.51 16 8 H 0.08 2.28 7.84 -52.49 -0.41 1.87 16 9 C 0.22 5.63 4.50 -5.19 -0.02 5.61 16 10 N -0.71 -14.95 5.55 -61.47 -0.34 -15.29 16 11 C 0.51 10.09 7.50 -10.99 -0.08 10.00 16 12 O -0.54 -12.41 14.35 5.55 0.08 -12.33 16 13 C 0.04 0.55 5.23 -4.98 -0.03 0.52 16 14 N -0.50 -7.17 4.18 -229.52 -0.96 -8.12 16 15 C 0.05 0.68 5.11 -3.83 -0.02 0.67 16 16 C -0.12 -1.27 6.09 -26.65 -0.16 -1.43 16 17 C -0.12 -1.06 6.00 -26.60 -0.16 -1.22 16 18 C -0.10 -1.04 5.36 -26.65 -0.14 -1.19 16 19 C 0.16 1.88 2.33 -68.87 -0.16 1.72 16 20 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 21 C 0.10 1.23 4.38 -13.90 -0.06 1.17 16 22 N -0.43 -6.34 10.12 -9.08 -0.09 -6.43 16 23 C 0.08 1.11 7.00 -84.96 -0.59 0.51 16 24 C -0.06 -0.67 10.05 -39.29 -0.39 -1.06 16 25 C -0.11 -0.97 9.94 -40.12 -0.40 -1.37 16 26 C -0.10 -0.82 10.04 -39.59 -0.40 -1.22 16 27 C -0.07 -0.69 10.07 -39.39 -0.40 -1.09 16 28 C -0.18 -2.10 6.56 -38.55 -0.25 -2.35 16 29 S 0.08 0.88 23.10 -107.50 -2.48 -1.60 16 30 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 31 H 0.02 0.66 7.20 -51.93 -0.37 0.29 16 32 H 0.02 0.51 7.57 -51.93 -0.39 0.11 16 33 H 0.39 7.44 8.32 -40.82 -0.34 7.10 16 34 H 0.06 0.77 8.12 -51.93 -0.42 0.35 16 35 H 0.09 1.47 6.28 -51.93 -0.33 1.14 16 36 H 0.10 1.71 5.80 -51.93 -0.30 1.41 16 37 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 45 H 0.14 0.85 8.06 -52.48 -0.42 0.42 16 46 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 47 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 LS Contribution 391.71 15.07 5.90 5.90 Total: -1.00 -34.00 391.71 -12.30 -46.31 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -6.81 Total: 4.59 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: -3.71 Total: -4.10 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: -0.62 Total: -55.89 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: 0.08 Total: -12.33 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Atomic # 16 Polarization: 0.88 SS G_CDS: -2.48 Total: -1.60 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.00 -12.30 -46.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000027372126.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.123 kcal (2) G-P(sol) polarization free energy of solvation -34.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds