Wall clock time and date at job start Tue Mar 31 2020 05:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99716 * 2 1 4 4 H 1.48498 * 109.47272 * 269.99796 * 3 2 1 5 5 H 1.48504 * 109.47124 * 30.00358 * 3 2 1 6 6 H 1.48505 * 109.47091 * 149.99923 * 3 2 1 7 7 C 1.37874 * 120.00061 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00293 * 0.02562 * 7 2 1 9 9 C 1.50707 * 119.99880 * 180.02562 * 7 2 1 10 10 N 1.46501 * 109.47075 * 180.02562 * 9 7 2 11 11 C 1.34776 * 119.99827 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00161 * 359.97438 * 11 10 9 13 13 C 1.50695 * 119.99771 * 179.97438 * 11 10 9 14 14 N 1.46903 * 109.47109 * 180.02562 * 13 11 10 15 15 C 1.46846 * 110.99717 * 293.95096 * 14 13 11 16 16 C 1.53036 * 109.52384 * 174.15896 * 15 14 13 17 17 C 1.53123 * 109.27788 * 59.18000 * 16 15 14 18 18 C 1.53124 * 109.15980 * 302.34618 * 17 16 15 19 19 C 1.46842 * 111.00077 * 169.74395 * 14 13 11 20 20 H 1.08991 * 109.46739 * 65.83356 * 19 14 13 21 21 C 1.50704 * 109.46289 * 305.85032 * 19 14 13 22 22 N 1.27931 * 124.23784 * 314.70427 * 21 19 14 23 23 C 1.34669 * 117.84407 * 179.76733 * 22 21 19 24 24 C 1.40965 * 129.68730 * 180.18732 * 23 22 21 25 25 C 1.36172 * 120.42258 * 180.31185 * 24 23 22 26 26 C 1.38796 * 120.78154 * 0.02562 * 25 24 23 27 27 C 1.37653 * 120.06393 * 359.97438 * 26 25 24 28 28 C 1.39333 * 119.95553 * 0.02562 * 27 26 25 29 29 S 1.70649 * 124.23661 * 134.99837 * 21 19 14 30 30 H 0.96992 * 120.00160 * 359.97438 * 1 2 3 31 31 H 1.08994 * 109.46914 * 59.99837 * 9 7 2 32 32 H 1.09006 * 109.46837 * 300.00239 * 9 7 2 33 33 H 0.96994 * 119.99941 * 359.97438 * 10 9 7 34 34 H 1.08994 * 109.47720 * 59.99882 * 13 11 10 35 35 H 1.09006 * 109.47201 * 299.99567 * 13 11 10 36 36 H 1.08999 * 109.46089 * 54.14588 * 15 14 13 37 37 H 1.08994 * 109.45639 * 294.17306 * 15 14 13 38 38 H 1.09000 * 109.50632 * 179.12292 * 16 15 14 39 39 H 1.09006 * 109.50216 * 299.24086 * 16 15 14 40 40 H 1.09000 * 109.52181 * 62.25097 * 17 16 15 41 41 H 1.08997 * 109.52376 * 182.44203 * 17 16 15 42 42 H 1.08997 * 109.50272 * 297.71554 * 18 17 16 43 43 H 1.08997 * 109.53375 * 177.61494 * 18 17 16 44 44 H 1.07993 * 119.78853 * 0.32790 * 24 23 22 45 45 H 1.08008 * 119.61296 * 179.97438 * 25 24 23 46 46 H 1.08001 * 119.96455 * 180.02562 * 26 25 24 47 47 H 1.08004 * 120.01780 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 7 4.0000 -2.5752 0.0010 11 6 5.3251 -2.8214 0.0020 12 8 6.1132 -1.8995 0.0025 13 6 5.8274 -4.2421 0.0024 14 7 7.2964 -4.2421 0.0041 15 6 7.8240 -3.6855 -1.2481 16 6 9.3468 -3.5662 -1.1533 17 6 9.9473 -4.9510 -0.8955 18 6 9.3452 -5.5288 0.3883 19 6 7.8224 -5.5911 0.2487 20 1 7.5608 -6.2400 -0.5870 21 6 7.2240 -6.1409 1.5179 22 7 7.1195 -5.4813 2.6090 23 6 6.5581 -6.0988 3.6660 24 6 6.3183 -5.6151 4.9681 25 6 5.7363 -6.4145 5.9044 26 6 5.3692 -7.7173 5.5969 27 6 5.5913 -8.2164 4.3334 28 6 6.1856 -7.4129 3.3625 29 16 6.6075 -7.7237 1.6815 30 1 -0.4850 0.8400 0.0004 31 1 3.8745 -0.6799 0.8911 32 1 3.8753 -0.6803 -0.8889 33 1 3.3697 -3.3124 0.0010 34 1 5.4648 -4.7561 -0.8877 35 1 5.4635 -4.7559 0.8923 36 1 7.3924 -2.6990 -1.4173 37 1 7.5622 -4.3434 -2.0767 38 1 9.7396 -3.1676 -2.0886 39 1 9.6091 -2.8975 -0.3334 40 1 9.7181 -5.6091 -1.7336 41 1 11.0281 -4.8644 -0.7841 42 1 9.6074 -4.8909 1.2324 43 1 9.7367 -6.5323 0.5550 44 1 6.5976 -4.6040 5.2248 45 1 5.5590 -6.0306 6.8982 46 1 4.9081 -8.3397 6.3495 47 1 5.3049 -9.2301 4.0948 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000027372126.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:53 Heat of formation + Delta-G solvation = 4.362775 kcal Electronic energy + Delta-G solvation = -29565.407879 eV Core-core repulsion = 25645.443919 eV Total energy + Delta-G solvation = -3919.963960 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 359.141 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.67056 -40.89079 -39.61139 -37.69298 -36.18133 -34.62138 -34.39332 -32.85191 -32.09588 -30.57568 -30.05591 -28.28205 -26.27833 -24.70604 -24.38617 -23.64574 -23.25183 -21.86889 -21.47673 -20.46637 -19.53307 -19.18733 -17.91375 -17.70287 -17.31001 -16.81221 -16.71547 -16.33895 -16.16823 -16.03009 -15.71129 -15.53730 -15.17084 -15.11430 -14.84291 -14.65870 -14.48437 -14.23594 -14.06581 -14.00095 -13.46494 -13.39007 -13.06355 -13.02382 -12.84430 -12.76395 -12.63324 -12.25992 -11.96463 -11.89431 -11.69763 -11.66733 -11.62259 -11.48329 -11.15184 -10.94215 -10.69297 -10.52709 -9.95557 -9.64352 -9.32348 -9.12197 -8.42838 -6.50001 -0.63243 0.15394 0.18519 0.62960 1.29867 1.32070 1.34090 1.45440 1.68479 2.19849 2.26068 2.69351 2.78944 2.91871 2.92751 3.51900 3.72879 3.76053 3.87166 3.95237 4.04502 4.11617 4.15548 4.19508 4.27168 4.29963 4.31970 4.34293 4.51927 4.63596 4.73529 4.80675 4.86134 4.91104 4.94153 4.99184 5.02827 5.12219 5.20608 5.22256 5.25310 5.29803 5.41307 5.46414 5.49776 5.75891 5.85210 6.04142 6.07438 6.50038 6.67577 6.80658 7.12929 7.37977 8.72022 Molecular weight = 359.14amu Principal moments of inertia in cm(-1) A = 0.008284 B = 0.003258 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3379.213018 B = 8592.124950 C =11015.173151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.029 3.971 3 Si 0.937 3.063 4 H -0.262 1.262 5 H -0.271 1.271 6 H -0.265 1.265 7 C -0.548 4.548 8 H 0.058 0.942 9 C 0.237 3.763 10 N -0.709 5.709 11 C 0.504 3.496 12 O -0.570 6.570 13 C 0.051 3.949 14 N -0.519 5.519 15 C 0.052 3.948 16 C -0.112 4.112 17 C -0.110 4.110 18 C -0.100 4.100 19 C 0.161 3.839 20 H 0.087 0.913 21 C 0.082 3.918 22 N -0.470 5.470 23 C 0.048 3.952 24 C -0.087 4.087 25 C -0.102 4.102 26 C -0.093 4.093 27 C -0.079 4.079 28 C -0.199 4.199 29 S 0.129 5.871 30 H 0.273 0.727 31 H 0.007 0.993 32 H 0.013 0.987 33 H 0.405 0.595 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.066 0.934 37 H 0.050 0.950 38 H 0.084 0.916 39 H 0.050 0.950 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.056 0.944 43 H 0.090 0.910 44 H 0.126 0.874 45 H 0.162 0.838 46 H 0.172 0.828 47 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.336 -22.678 4.958 29.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.172 4.172 3 Si 0.761 3.239 4 H -0.187 1.187 5 H -0.196 1.196 6 H -0.189 1.189 7 C -0.586 4.586 8 H 0.076 0.924 9 C 0.113 3.887 10 N -0.360 5.360 11 C 0.290 3.710 12 O -0.450 6.450 13 C -0.080 4.080 14 N -0.245 5.245 15 C -0.075 4.075 16 C -0.150 4.150 17 C -0.148 4.148 18 C -0.139 4.139 19 C 0.050 3.950 20 H 0.104 0.896 21 C -0.203 4.203 22 N -0.183 5.183 23 C -0.071 4.071 24 C -0.108 4.108 25 C -0.123 4.123 26 C -0.115 4.115 27 C -0.102 4.102 28 C -0.318 4.318 29 S 0.386 5.614 30 H 0.082 0.918 31 H 0.025 0.975 32 H 0.031 0.969 33 H 0.240 0.760 34 H 0.105 0.895 35 H 0.110 0.890 36 H 0.085 0.915 37 H 0.068 0.932 38 H 0.102 0.898 39 H 0.069 0.931 40 H 0.100 0.900 41 H 0.103 0.897 42 H 0.075 0.925 43 H 0.109 0.891 44 H 0.144 0.856 45 H 0.179 0.821 46 H 0.189 0.811 47 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 19.015 -21.872 4.610 29.346 hybrid contribution -0.978 0.973 0.359 1.425 sum 18.037 -20.899 4.969 28.050 Atomic orbital electron populations 1.69975 1.07622 1.28663 1.50578 1.25577 0.95545 1.02585 0.93473 0.85866 0.79129 0.79366 0.79584 1.18671 1.19588 1.18913 1.21275 0.89874 0.94602 1.52830 0.92390 1.19045 0.93367 0.80829 0.95435 1.46028 1.06638 1.09726 1.73585 1.20994 0.82025 0.92142 0.75796 1.90599 1.55847 1.47555 1.51000 1.21815 0.89984 0.92739 1.03468 1.61388 1.04756 1.20996 1.37353 1.22286 0.96949 1.00081 0.88225 1.21550 0.93006 0.98230 1.02195 1.21574 1.00727 0.95681 0.96795 1.21606 0.90344 1.02379 0.99579 1.20496 0.96293 0.88690 0.89527 0.89581 1.26813 1.00826 0.94940 0.97766 1.66150 1.16370 1.36636 0.99156 1.19593 1.01734 0.90784 0.95022 1.20670 0.99335 1.00920 0.89895 1.21137 0.96751 0.94187 1.00188 1.21626 0.97914 0.95673 0.96251 1.20768 0.97665 0.99968 0.91780 1.24203 1.09024 0.99014 0.99577 1.83547 1.59676 1.13835 1.04367 0.91764 0.97533 0.96902 0.75988 0.89488 0.88977 0.91538 0.93238 0.89792 0.93135 0.90003 0.89743 0.92543 0.89150 0.85595 0.82081 0.81086 0.82673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.38 13.96 21.45 0.30 -56.08 16 2 C 0.03 1.66 5.47 84.65 0.46 2.12 16 3 Si 0.94 45.26 27.47 68.60 1.88 47.15 16 4 H -0.26 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 6 H -0.26 -12.90 6.54 99.48 0.65 -12.25 16 7 C -0.55 -31.26 9.83 25.60 0.25 -31.01 16 8 H 0.06 3.47 7.84 -2.91 -0.02 3.45 16 9 C 0.24 12.20 4.50 85.64 0.39 12.59 16 10 N -0.71 -30.52 5.55 -466.78 -2.59 -33.11 16 11 C 0.50 20.50 7.50 87.66 0.66 21.16 16 12 O -0.57 -27.27 14.35 -3.04 -0.04 -27.32 16 13 C 0.05 1.56 5.23 85.55 0.45 2.01 16 14 N -0.52 -14.86 4.18 -880.07 -3.68 -18.54 16 15 C 0.05 1.36 5.11 86.33 0.44 1.80 16 16 C -0.11 -2.38 6.09 30.65 0.19 -2.20 16 17 C -0.11 -1.70 6.00 30.68 0.18 -1.51 16 18 C -0.10 -1.88 5.36 30.65 0.16 -1.71 16 19 C 0.16 3.54 2.33 44.20 0.10 3.64 16 20 H 0.09 1.46 8.13 -2.39 -0.02 1.44 16 21 C 0.08 2.01 4.38 88.68 0.39 2.39 16 22 N -0.47 -14.24 10.12 -182.50 -1.85 -16.09 16 23 C 0.05 1.32 7.00 39.78 0.28 1.60 16 24 C -0.09 -2.09 10.05 22.46 0.23 -1.86 16 25 C -0.10 -1.68 9.94 21.92 0.22 -1.46 16 26 C -0.09 -1.25 10.04 22.26 0.22 -1.03 16 27 C -0.08 -1.28 10.07 22.40 0.23 -1.06 16 28 C -0.20 -4.45 6.56 22.94 0.15 -4.30 16 29 S 0.13 2.48 23.10 -56.49 -1.30 1.18 16 30 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 31 H 0.01 0.37 7.20 -2.39 -0.02 0.35 16 32 H 0.01 0.69 7.57 -2.38 -0.02 0.67 16 33 H 0.41 15.52 8.32 -92.71 -0.77 14.74 16 34 H 0.09 2.15 8.12 -2.39 -0.02 2.13 16 35 H 0.09 2.89 6.28 -2.38 -0.01 2.87 16 36 H 0.07 2.25 5.80 -2.39 -0.01 2.24 16 37 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 40 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.13 3.06 8.06 -2.91 -0.02 3.04 16 45 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 46 H 0.17 1.00 8.06 -2.91 -0.02 0.98 16 47 H 0.16 1.62 8.06 -2.91 -0.02 1.60 16 Total: -1.00 -76.74 391.71 -2.12 -78.85 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: 0.17 Total: 22.78 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: 4.99 Total: 1.18 kcal Atomic # 7 Polarization: -116.00 SS G_CDS: -7.81 Total: -123.82 kcal Atomic # 8 Polarization: -27.27 SS G_CDS: -0.04 Total: -27.32 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.88 Total: 47.15 kcal Atomic # 16 Polarization: 2.48 SS G_CDS: -1.30 Total: 1.18 kcal Total: -76.74 -2.12 -78.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000027372126.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.216 kcal (2) G-P(sol) polarization free energy of solvation -76.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds