Wall clock time and date at job start Tue Mar 31 2020 04:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47101 * 2 1 4 4 H 1.08997 * 109.47182 * 304.99714 * 3 2 1 5 5 O 1.42897 * 109.47137 * 65.00525 * 3 2 1 6 6 C 1.35904 * 116.99610 * 261.87734 * 5 3 2 7 7 C 1.38766 * 120.04973 * 356.89368 * 6 5 3 8 8 C 1.38121 * 119.97074 * 180.02562 * 7 6 5 9 9 C 1.38262 * 120.07217 * 0.02562 * 8 7 6 10 10 C 1.38369 * 120.09475 * 359.95427 * 9 8 7 11 11 Cl 1.73605 * 119.98208 * 179.74325 * 10 9 8 12 12 C 1.38275 * 120.03133 * 0.02562 * 10 9 8 13 13 C 1.50709 * 109.46938 * 185.00024 * 3 2 1 14 14 O 1.21279 * 119.99840 * 244.99857 * 13 3 2 15 15 N 1.34773 * 119.99941 * 65.00248 * 13 3 2 16 16 C 1.39242 * 120.00105 * 185.50112 * 15 13 3 17 17 C 1.39472 * 119.83590 * 213.24126 * 16 15 13 18 18 C 1.36373 * 120.17180 * 179.75683 * 17 16 15 19 19 C 1.40867 * 119.82523 * 0.51875 * 18 17 16 20 20 C 1.41151 * 120.16562 * 179.71611 * 19 18 17 21 21 H 1.08001 * 119.99907 * 158.62488 * 20 19 18 22 22 C 1.39909 * 119.99880 * 338.62374 * 20 19 18 23 23 N 1.30865 * 120.00099 * 332.54250 * 22 20 19 24 24 Si 1.86803 * 119.99748 * 152.53968 * 22 20 19 25 25 H 1.48498 * 109.47253 * 94.98881 * 24 22 20 26 26 H 1.48497 * 109.47011 * 214.99022 * 24 22 20 27 27 H 1.48498 * 109.47200 * 334.98790 * 24 22 20 28 28 C 1.40871 * 119.67462 * 359.73840 * 19 18 17 29 29 C 1.36384 * 119.82748 * 359.97438 * 28 19 18 30 30 H 1.09000 * 109.47093 * 60.00145 * 1 2 3 31 31 H 1.09001 * 109.46987 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46847 * 299.99923 * 1 2 3 33 33 H 1.08999 * 109.47351 * 239.99927 * 2 1 3 34 34 H 1.09005 * 109.47675 * 120.00233 * 2 1 3 35 35 H 1.08008 * 120.01053 * 359.97438 * 7 6 5 36 36 H 1.08004 * 119.96911 * 179.97438 * 8 7 6 37 37 H 1.08002 * 119.95410 * 179.97438 * 9 8 7 38 38 H 1.08000 * 120.03683 * 180.02562 * 12 10 9 39 39 H 0.96999 * 119.99939 * 5.49797 * 15 13 3 40 40 H 1.08009 * 119.91481 * 0.02562 * 17 16 15 41 41 H 1.08001 * 120.08893 * 180.25141 * 18 17 16 42 42 H 0.96997 * 119.99990 * 180.02562 * 23 22 20 43 43 H 1.07999 * 120.08907 * 179.97438 * 28 19 18 44 44 H 1.07996 * 119.91780 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 8 1.6620 2.0813 1.2211 6 6 0.5509 2.8634 1.1900 7 6 -0.1240 3.0645 -0.0057 8 6 -1.2527 3.8600 -0.0355 9 6 -1.7106 4.4567 1.1247 10 6 -1.0401 4.2577 2.3186 11 17 -1.6137 5.0137 3.7722 12 6 0.0901 3.4618 2.3532 13 6 3.5419 1.4443 -0.1238 14 8 4.2250 1.8610 0.7875 15 7 4.1260 0.9828 -1.2474 16 6 5.5126 0.8771 -1.3183 17 6 6.1632 1.0875 -2.5339 18 6 7.5213 0.9907 -2.6102 19 6 8.2663 0.6664 -1.4595 20 6 9.6718 0.5584 -1.5315 21 1 10.2675 0.6554 -0.6359 22 6 10.2933 0.3258 -2.7633 23 7 9.6500 -0.3060 -3.7117 24 14 12.0413 0.9171 -3.0539 25 1 12.9916 -0.1873 -2.7667 26 1 12.1908 1.3435 -4.4684 27 1 12.3310 2.0650 -2.1576 28 6 7.6016 0.4500 -0.2364 29 6 6.2433 0.5562 -0.1744 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 0.2337 2.5998 -0.9127 36 1 -1.7778 4.0169 -0.9662 37 1 -2.5932 5.0787 1.0991 38 1 0.6133 3.3061 3.2851 39 1 3.5804 0.7242 -2.0065 40 1 5.5902 1.3321 -3.4163 41 1 8.0241 1.1578 -3.5513 42 1 10.0810 -0.4676 -4.5655 43 1 8.1661 0.2007 0.6499 44 1 5.7323 0.3902 0.7623 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000030852341.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:13 Heat of formation + Delta-G solvation = -46.681165 kcal Electronic energy + Delta-G solvation = -28227.959252 eV Core-core repulsion = 24135.612309 eV Total energy + Delta-G solvation = -4092.346943 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 359.108 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.99237 -40.84743 -39.27729 -38.53385 -37.29102 -36.25586 -35.17887 -34.39478 -31.86108 -31.50380 -31.19364 -30.87980 -28.73333 -26.57228 -24.25500 -23.74452 -23.59908 -22.96589 -22.23322 -21.03733 -19.75749 -19.32958 -18.80728 -17.84386 -17.12440 -17.04366 -16.95120 -16.84269 -16.13306 -15.98333 -15.72836 -15.29093 -15.06264 -14.91062 -14.65959 -14.48333 -14.37144 -14.01291 -13.81665 -13.68850 -13.47212 -13.34276 -13.00542 -12.89726 -12.82132 -12.70900 -12.52771 -12.42530 -12.34258 -11.98097 -11.97110 -11.84467 -11.58742 -11.53798 -11.20892 -10.78270 -10.49375 -9.91634 -9.50215 -9.28395 -8.97785 -8.72469 -6.25602 0.07167 0.30175 0.75126 0.97634 1.11713 1.35843 1.40326 1.53022 1.66638 1.72435 2.19753 2.53961 2.63488 2.66290 3.46028 3.57391 3.67102 3.74363 3.77489 4.06550 4.10566 4.12996 4.33857 4.35799 4.39322 4.43395 4.46128 4.72796 4.76876 4.89055 5.01596 5.06656 5.07713 5.12281 5.13925 5.23739 5.25846 5.31438 5.33897 5.40420 5.52968 5.62018 5.83592 5.99391 6.05845 6.24713 6.34015 6.60326 6.66745 6.88481 6.96096 7.31096 8.22638 Molecular weight = 359.11amu Principal moments of inertia in cm(-1) A = 0.021447 B = 0.001796 C = 0.001740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.200484 B =15586.026997 C =16083.844683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.134 4.134 3 C 0.076 3.924 4 H 0.138 0.862 5 O -0.307 6.307 6 C 0.130 3.870 7 C -0.208 4.208 8 C -0.055 4.055 9 C -0.151 4.151 10 C -0.003 4.003 11 Cl -0.066 7.066 12 C -0.169 4.169 13 C 0.494 3.506 14 O -0.565 6.565 15 N -0.630 5.630 16 C -0.003 4.003 17 C -0.100 4.100 18 C -0.183 4.183 19 C 0.080 3.920 20 C -0.499 4.499 21 H 0.072 0.928 22 C 0.047 3.953 23 N -0.802 5.802 24 Si 0.975 3.025 25 H -0.261 1.261 26 H -0.259 1.259 27 H -0.264 1.264 28 C -0.244 4.244 29 C -0.082 4.082 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.045 0.955 33 H 0.107 0.893 34 H 0.060 0.940 35 H 0.160 0.840 36 H 0.173 0.827 37 H 0.156 0.844 38 H 0.127 0.873 39 H 0.420 0.580 40 H 0.130 0.870 41 H 0.106 0.894 42 H 0.294 0.706 43 H 0.090 0.910 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.960 4.720 -0.214 25.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.172 4.172 3 C 0.017 3.983 4 H 0.155 0.845 5 O -0.220 6.220 6 C 0.085 3.915 7 C -0.226 4.226 8 C -0.073 4.073 9 C -0.169 4.169 10 C -0.030 4.030 11 Cl -0.037 7.037 12 C -0.188 4.188 13 C 0.281 3.719 14 O -0.443 6.443 15 N -0.277 5.277 16 C -0.096 4.096 17 C -0.120 4.120 18 C -0.203 4.203 19 C 0.078 3.922 20 C -0.527 4.527 21 H 0.091 0.909 22 C -0.172 4.172 23 N -0.426 5.426 24 Si 0.795 3.205 25 H -0.185 1.185 26 H -0.183 1.183 27 H -0.187 1.187 28 C -0.264 4.264 29 C -0.102 4.102 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.064 0.936 33 H 0.125 0.875 34 H 0.079 0.921 35 H 0.177 0.823 36 H 0.190 0.810 37 H 0.174 0.826 38 H 0.145 0.855 39 H 0.258 0.742 40 H 0.147 0.853 41 H 0.124 0.876 42 H 0.105 0.895 43 H 0.108 0.892 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -24.433 4.906 0.509 24.926 hybrid contribution 1.032 -0.047 0.182 1.049 sum -23.401 4.858 0.691 23.910 Atomic orbital electron populations 1.21851 0.92528 1.03522 1.02677 1.22015 0.98715 0.91961 1.04525 1.22498 0.90031 0.97115 0.88674 0.84508 1.86210 1.41601 1.59850 1.34325 1.19024 0.86670 0.91222 0.94612 1.21682 0.99013 1.04705 0.97179 1.21306 0.94114 0.92832 0.99015 1.21310 1.02071 1.03058 0.90481 1.20686 0.95666 0.97696 0.88963 1.98378 1.88147 1.80378 1.36807 1.20254 0.98386 1.02007 0.98180 1.21044 0.90752 0.77411 0.82702 1.90724 1.66055 1.46777 1.40698 1.42671 1.04997 1.63258 1.16749 1.17075 0.82555 1.15201 0.94748 1.20443 0.94355 1.01197 0.95983 1.20773 0.93296 1.07565 0.98694 1.17947 0.93968 0.88619 0.91707 1.19746 0.92414 1.45328 0.95241 0.90937 1.26717 1.04600 0.91290 0.94557 1.69896 1.41085 1.25921 1.05733 0.85311 0.76560 0.79693 0.78916 1.18533 1.18345 1.18750 1.20713 0.93995 1.13567 0.98131 1.20336 0.93897 0.99073 0.96865 0.89921 0.90666 0.93615 0.87463 0.92082 0.82287 0.80955 0.82626 0.85479 0.74217 0.85267 0.87575 0.89511 0.89212 0.88565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 8.60 71.98 0.62 -1.23 16 2 C -0.13 -2.33 5.61 30.59 0.17 -2.16 16 3 C 0.08 1.71 2.54 29.85 0.08 1.78 16 4 H 0.14 2.01 5.15 -2.39 -0.01 2.00 16 5 O -0.31 -8.51 9.14 -73.48 -0.67 -9.19 16 6 C 0.13 2.89 5.38 22.50 0.12 3.01 16 7 C -0.21 -3.05 7.61 22.37 0.17 -2.88 16 8 C -0.05 -0.60 10.04 22.25 0.22 -0.38 16 9 C -0.15 -2.03 9.83 22.31 0.22 -1.81 16 10 C 0.00 -0.06 6.32 22.31 0.14 0.08 16 11 Cl -0.07 -1.19 28.95 -2.72 -0.08 -1.27 16 12 C -0.17 -3.84 9.77 22.39 0.22 -3.62 16 13 C 0.49 16.47 6.90 87.66 0.60 17.08 16 14 O -0.56 -25.56 14.18 15.97 0.23 -25.33 16 15 N -0.63 -19.85 5.19 -303.11 -1.57 -21.42 16 16 C 0.00 -0.12 6.29 38.56 0.24 0.13 16 17 C -0.10 -4.33 9.89 22.13 0.22 -4.11 16 18 C -0.18 -9.35 8.70 22.48 0.20 -9.15 16 19 C 0.08 4.42 5.59 -21.28 -0.12 4.30 16 20 C -0.50 -27.25 8.98 23.39 0.21 -27.04 16 21 H 0.07 3.90 7.98 -2.91 -0.02 3.88 16 22 C 0.05 2.31 4.92 85.24 0.42 2.73 16 23 N -0.80 -40.16 11.37 21.82 0.25 -39.91 16 24 Si 0.98 37.32 29.64 68.60 2.03 39.35 16 25 H -0.26 -9.55 7.11 99.48 0.71 -8.85 16 26 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 27 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 28 C -0.24 -13.01 9.74 22.48 0.22 -12.79 16 29 C -0.08 -4.03 8.57 22.14 0.19 -3.84 16 30 H 0.08 0.63 7.23 -2.39 -0.02 0.62 16 31 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.04 0.72 6.61 -2.39 -0.02 0.70 16 33 H 0.11 1.44 7.94 -2.39 -0.02 1.42 16 34 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 35 H 0.16 1.52 4.89 -2.91 -0.01 1.51 16 36 H 0.17 0.63 8.06 -2.91 -0.02 0.60 16 37 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 38 H 0.13 3.11 8.06 -2.91 -0.02 3.09 16 39 H 0.42 8.97 8.71 -92.71 -0.81 8.16 16 40 H 0.13 4.51 8.06 -2.91 -0.02 4.48 16 41 H 0.11 5.50 6.29 -2.91 -0.02 5.48 16 42 H 0.29 13.03 8.30 -92.71 -0.77 12.26 16 43 H 0.09 4.68 8.06 -2.91 -0.02 4.65 16 44 H 0.10 4.77 6.41 -2.91 -0.02 4.75 16 Total: -1.00 -72.05 381.15 4.58 -67.48 By element: Atomic # 1 Polarization: 29.92 SS G_CDS: 0.25 Total: 30.17 kcal Atomic # 6 Polarization: -44.03 SS G_CDS: 4.14 Total: -39.89 kcal Atomic # 7 Polarization: -60.01 SS G_CDS: -1.33 Total: -61.33 kcal Atomic # 8 Polarization: -34.07 SS G_CDS: -0.45 Total: -34.52 kcal Atomic # 14 Polarization: 37.32 SS G_CDS: 2.03 Total: 39.35 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -0.08 Total: -1.27 kcal Total: -72.05 4.58 -67.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000030852341.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.796 kcal (2) G-P(sol) polarization free energy of solvation -72.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds