Wall clock time and date at job start Tue Mar 31 2020 05:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00110 * 2 1 4 4 H 1.48498 * 109.47284 * 270.00129 * 3 2 1 5 5 H 1.48505 * 109.47020 * 30.00205 * 3 2 1 6 6 H 1.48499 * 109.46995 * 149.99681 * 3 2 1 7 7 C 1.37873 * 120.00013 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00404 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00192 * 0.02562 * 7 2 1 10 10 N 1.46492 * 109.47448 * 180.02562 * 9 7 2 11 11 C 1.34777 * 120.00318 * 179.97438 * 10 9 7 12 12 O 1.21286 * 119.99683 * 0.02562 * 11 10 9 13 13 C 1.50698 * 120.00212 * 179.97438 * 11 10 9 14 14 N 1.46501 * 109.47000 * 180.02562 * 13 11 10 15 15 C 1.33864 * 124.19793 * 90.03079 * 14 13 11 16 16 O 1.21535 * 123.79002 * 0.08919 * 15 14 13 17 17 N 1.34688 * 112.42486 * 180.02562 * 15 14 13 18 18 C 1.46835 * 106.40363 * 359.92806 * 17 15 14 19 19 C 1.52566 * 110.48047 * 241.50225 * 18 17 15 20 20 C 1.53495 * 108.33831 * 284.28367 * 19 18 17 21 21 O 1.42788 * 108.49304 * 296.48293 * 20 19 18 22 22 C 1.35816 * 118.17104 * 49.35016 * 21 20 19 23 23 C 1.39093 * 118.67513 * 162.43471 * 22 21 20 24 24 C 1.37968 * 120.22950 * 179.36231 * 23 22 21 25 25 C 1.38294 * 119.95535 * 0.03161 * 24 23 22 26 26 C 1.38098 * 119.99294 * 0.10445 * 25 24 23 27 27 C 1.38481 * 120.34580 * 359.95627 * 26 25 24 28 28 C 1.34927 * 124.19691 * 270.04657 * 14 13 11 29 29 O 1.21233 * 127.25556 * 359.96500 * 28 14 13 30 30 H 0.97004 * 119.99658 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.46994 * 59.99569 * 9 7 2 32 32 H 1.09005 * 109.46846 * 300.00349 * 9 7 2 33 33 H 0.97001 * 120.00435 * 359.97438 * 10 9 7 34 34 H 1.08997 * 109.46907 * 60.00620 * 13 11 10 35 35 H 1.08996 * 109.47430 * 300.00206 * 13 11 10 36 36 H 0.97001 * 126.80159 * 179.97438 * 17 15 14 37 37 H 1.09002 * 109.69863 * 44.00795 * 19 18 17 38 38 H 1.09000 * 109.69519 * 164.56332 * 19 18 17 39 39 H 1.08998 * 109.63303 * 56.12962 * 20 19 18 40 40 H 1.08998 * 109.63443 * 176.73449 * 20 19 18 41 41 H 1.07999 * 119.88501 * 359.35041 * 23 22 21 42 42 H 1.08000 * 120.02253 * 180.02562 * 24 23 22 43 43 H 1.08003 * 120.00176 * 180.13178 * 25 24 23 44 44 H 1.07999 * 119.83259 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 7 2.2030 -3.6126 -0.0015 11 6 1.7538 -4.8833 -0.0019 12 8 0.5613 -5.1049 -0.0029 13 6 2.7330 -6.0288 -0.0022 14 7 2.0005 -7.2975 -0.0032 15 6 1.6252 -7.9487 -1.1109 16 8 1.8552 -7.5546 -2.2374 17 7 0.9652 -9.0904 -0.8370 18 6 0.9059 -9.1942 0.6265 19 6 1.6315 -10.4490 1.1024 20 6 0.7382 -11.6630 0.8118 21 8 -0.4584 -11.5394 1.5811 22 6 -1.1281 -10.3585 1.5398 23 6 -2.4527 -10.3274 1.9631 24 6 -3.1593 -9.1425 1.9471 25 6 -2.5501 -7.9810 1.5085 26 6 -1.2360 -8.0083 1.0848 27 6 -0.5214 -9.1945 1.0971 28 6 1.6201 -7.9544 1.1123 29 8 1.8122 -7.6210 2.2619 30 1 -0.4850 0.8401 0.0004 31 1 0.6247 -2.5563 -0.8919 32 1 0.6240 -2.5574 0.8880 33 1 3.1567 -3.4355 -0.0010 34 1 3.3596 -5.9713 0.8879 35 1 3.3597 -5.9708 -0.8921 36 1 0.6016 -9.7198 -1.4793 37 1 2.5763 -10.5519 0.5686 38 1 1.8204 -10.3801 2.1737 39 1 0.4894 -11.6890 -0.2491 40 1 1.2611 -12.5777 1.0910 41 1 -2.9298 -11.2339 2.3051 42 1 -4.1875 -9.1220 2.2768 43 1 -3.1019 -7.0526 1.4977 44 1 -0.7629 -7.0998 0.7424 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000031643076.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:25 Heat of formation + Delta-G solvation = -78.161894 kcal Electronic energy + Delta-G solvation = -32708.806710 eV Core-core repulsion = 28206.678247 eV Total energy + Delta-G solvation = -4502.128464 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 359.136 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.07222 -40.63449 -38.82337 -38.68857 -37.79950 -36.54046 -35.23104 -34.23699 -32.45458 -32.25485 -31.07342 -30.39102 -29.25295 -27.05138 -26.18013 -24.35624 -23.37850 -23.04696 -22.49006 -21.02247 -20.50343 -19.79396 -18.44906 -18.21435 -17.57979 -17.24792 -16.85292 -16.39324 -16.10452 -15.85165 -15.70944 -15.35645 -15.27429 -14.89040 -14.73553 -14.58126 -14.30307 -14.22525 -14.02002 -13.80569 -13.73547 -12.99576 -12.90372 -12.65771 -12.57597 -12.10777 -12.01234 -11.71772 -11.60176 -11.35599 -11.23686 -11.05701 -10.96844 -10.90150 -10.41785 -10.30620 -10.24525 -9.80641 -9.43779 -9.16294 -9.06859 -8.77962 -8.47931 -7.98882 -6.19025 -4.26283 0.90352 1.21792 1.44599 2.01500 2.74715 2.86736 2.91156 3.14973 3.23513 3.29552 3.31851 3.41235 3.69222 3.96143 4.00513 4.05188 4.27534 4.34156 4.59954 4.64091 4.81194 4.85974 4.97736 5.04185 5.13487 5.17400 5.18785 5.20418 5.25596 5.33092 5.44723 5.45301 5.49940 5.77397 6.02792 6.21425 6.38719 6.50515 6.55001 6.85764 7.06817 7.18262 7.24025 7.31151 7.46704 7.60461 7.92504 7.96763 8.49204 8.70063 8.95187 9.40008 10.91155 Molecular weight = 359.14amu Principal moments of inertia in cm(-1) A = 0.015938 B = 0.002635 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.352720 B =10625.418516 C =11624.380905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.544 4.544 8 H 0.064 0.936 9 C 0.251 3.749 10 N -0.704 5.704 11 C 0.487 3.513 12 O -0.547 6.547 13 C 0.095 3.905 14 N -0.558 5.558 15 C 0.711 3.289 16 O -0.532 6.532 17 N -0.717 5.717 18 C 0.174 3.826 19 C -0.157 4.157 20 C 0.068 3.932 21 O -0.312 6.312 22 C 0.152 3.848 23 C -0.155 4.155 24 C -0.070 4.070 25 C -0.146 4.146 26 C -0.056 4.056 27 C -0.175 4.175 28 C 0.543 3.457 29 O -0.449 6.449 30 H 0.266 0.734 31 H 0.028 0.972 32 H 0.028 0.972 33 H 0.393 0.607 34 H 0.122 0.878 35 H 0.125 0.875 36 H 0.438 0.562 37 H 0.100 0.900 38 H 0.105 0.895 39 H 0.067 0.933 40 H 0.119 0.881 41 H 0.134 0.866 42 H 0.133 0.867 43 H 0.132 0.868 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.745 -26.156 2.502 26.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.583 4.583 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.352 5.352 11 C 0.270 3.730 12 O -0.426 6.426 13 C -0.030 4.030 14 N -0.303 5.303 15 C 0.412 3.588 16 O -0.404 6.404 17 N -0.382 5.382 18 C 0.083 3.917 19 C -0.195 4.195 20 C -0.007 4.007 21 O -0.226 6.226 22 C 0.106 3.894 23 C -0.174 4.174 24 C -0.088 4.088 25 C -0.164 4.164 26 C -0.074 4.074 27 C -0.177 4.177 28 C 0.329 3.671 29 O -0.316 6.316 30 H 0.076 0.924 31 H 0.046 0.954 32 H 0.046 0.954 33 H 0.226 0.774 34 H 0.140 0.860 35 H 0.143 0.857 36 H 0.283 0.717 37 H 0.119 0.881 38 H 0.123 0.877 39 H 0.085 0.915 40 H 0.137 0.863 41 H 0.152 0.848 42 H 0.151 0.849 43 H 0.150 0.850 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.983 -25.814 2.639 25.968 hybrid contribution 0.830 1.102 -0.471 1.458 sum 1.814 -24.712 2.168 24.873 Atomic orbital electron populations 1.69974 1.06130 1.27365 1.48748 1.24951 0.94927 0.99493 0.94623 0.86397 0.79615 0.82551 0.78244 1.20430 1.20992 1.19705 1.21205 0.93307 0.90332 1.53422 0.91780 1.19147 0.88206 0.81695 0.97869 1.46378 1.11427 1.05679 1.71724 1.20478 0.89594 0.84683 0.78271 1.90640 1.16463 1.84669 1.50816 1.21633 0.94240 0.80287 1.06840 1.45882 1.53856 1.22600 1.07974 1.15793 0.78359 0.80508 0.84145 1.91029 1.59480 1.69663 1.20227 1.45616 1.61064 1.25166 1.06329 1.19546 0.93985 0.96065 0.82106 1.22513 0.99816 0.92447 1.04773 1.22958 0.83547 0.98584 0.95595 1.85968 1.38280 1.32087 1.66249 1.18605 0.91180 0.83657 0.95932 1.20540 0.91313 0.99542 1.06010 1.21082 0.99746 0.91651 0.96303 1.21131 0.95023 0.99019 1.01235 1.21272 0.94596 0.97042 0.94516 1.19163 0.93771 0.94555 1.10257 1.20266 0.77520 0.84294 0.85039 1.90814 1.52953 1.70322 1.17558 0.92407 0.95372 0.95387 0.77423 0.86017 0.85744 0.71748 0.88117 0.87670 0.91472 0.86283 0.84824 0.84921 0.85047 0.84519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.04 13.29 55.43 0.74 -25.30 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.54 -14.66 9.28 -34.44 -0.32 -14.98 16 8 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 9 C 0.25 6.62 5.43 -5.20 -0.03 6.59 16 10 N -0.70 -14.52 5.55 -61.48 -0.34 -14.86 16 11 C 0.49 9.65 7.90 -10.99 -0.09 9.57 16 12 O -0.55 -12.91 15.55 5.55 0.09 -12.82 16 13 C 0.10 1.37 6.19 -5.19 -0.03 1.33 16 14 N -0.56 -8.17 2.10 -122.11 -0.26 -8.43 16 15 C 0.71 10.37 8.63 -87.81 -0.76 9.62 16 16 O -0.53 -9.40 17.48 5.33 0.09 -9.30 16 17 N -0.72 -7.74 5.73 -54.88 -0.31 -8.05 16 18 C 0.17 1.94 0.86 -134.16 -0.12 1.83 16 19 C -0.16 -1.18 5.21 -26.70 -0.14 -1.32 16 20 C 0.07 0.41 7.02 37.41 0.26 0.67 16 21 O -0.31 -2.88 10.25 -19.16 -0.20 -3.08 16 22 C 0.15 1.66 6.49 -39.16 -0.25 1.41 16 23 C -0.16 -1.55 9.94 -39.36 -0.39 -1.94 16 24 C -0.07 -0.70 10.04 -39.66 -0.40 -1.10 16 25 C -0.15 -1.84 10.04 -39.61 -0.40 -2.23 16 26 C -0.06 -0.81 9.13 -39.54 -0.36 -1.17 16 27 C -0.18 -2.18 5.11 -104.62 -0.53 -2.71 16 28 C 0.54 7.77 5.66 -10.72 -0.06 7.71 16 29 O -0.45 -7.43 17.77 5.60 0.10 -7.33 16 30 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.39 6.74 8.32 -40.82 -0.34 6.40 16 34 H 0.12 1.42 8.01 -51.93 -0.42 1.00 16 35 H 0.12 1.52 7.86 -51.93 -0.41 1.11 16 36 H 0.44 3.57 8.69 -40.82 -0.35 3.22 16 37 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.10 0.85 8.13 -51.93 -0.42 0.43 16 39 H 0.07 0.32 7.76 -51.93 -0.40 -0.08 16 40 H 0.12 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 42 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 43 H 0.13 1.56 8.06 -52.48 -0.42 1.14 16 44 H 0.14 2.44 6.44 -52.49 -0.34 2.10 16 LS Contribution 378.82 15.07 5.71 5.71 Total: -1.00 -36.58 378.82 -8.29 -44.87 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -5.18 Total: 7.87 kcal Atomic # 6 Polarization: 18.65 SS G_CDS: -3.71 Total: 14.94 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: -0.18 Total: -56.64 kcal Atomic # 8 Polarization: -32.62 SS G_CDS: 0.08 Total: -32.54 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.58 -8.29 -44.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031643076.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.295 kcal (2) G-P(sol) polarization free energy of solvation -36.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds