Wall clock time and date at job start Tue Mar 31 2020 05:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00110 * 2 1 4 4 H 1.48498 * 109.47284 * 270.00129 * 3 2 1 5 5 H 1.48505 * 109.47020 * 30.00205 * 3 2 1 6 6 H 1.48499 * 109.46995 * 149.99681 * 3 2 1 7 7 C 1.37873 * 120.00013 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00404 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00192 * 0.02562 * 7 2 1 10 10 N 1.46492 * 109.47448 * 180.02562 * 9 7 2 11 11 C 1.34777 * 120.00318 * 179.97438 * 10 9 7 12 12 O 1.21286 * 119.99683 * 0.02562 * 11 10 9 13 13 C 1.50698 * 120.00212 * 179.97438 * 11 10 9 14 14 N 1.46501 * 109.47000 * 180.02562 * 13 11 10 15 15 C 1.33864 * 124.19793 * 90.03079 * 14 13 11 16 16 O 1.21535 * 123.79002 * 0.08919 * 15 14 13 17 17 N 1.34688 * 112.42486 * 180.02562 * 15 14 13 18 18 C 1.46835 * 106.40363 * 359.92806 * 17 15 14 19 19 C 1.52566 * 110.48047 * 241.50225 * 18 17 15 20 20 C 1.53495 * 108.33831 * 284.28367 * 19 18 17 21 21 O 1.42788 * 108.49304 * 296.48293 * 20 19 18 22 22 C 1.35816 * 118.17104 * 49.35016 * 21 20 19 23 23 C 1.39093 * 118.67513 * 162.43471 * 22 21 20 24 24 C 1.37968 * 120.22950 * 179.36231 * 23 22 21 25 25 C 1.38294 * 119.95535 * 0.03161 * 24 23 22 26 26 C 1.38098 * 119.99294 * 0.10445 * 25 24 23 27 27 C 1.38481 * 120.34580 * 359.95627 * 26 25 24 28 28 C 1.34927 * 124.19691 * 270.04657 * 14 13 11 29 29 O 1.21233 * 127.25556 * 359.96500 * 28 14 13 30 30 H 0.97004 * 119.99658 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.46994 * 59.99569 * 9 7 2 32 32 H 1.09005 * 109.46846 * 300.00349 * 9 7 2 33 33 H 0.97001 * 120.00435 * 359.97438 * 10 9 7 34 34 H 1.08997 * 109.46907 * 60.00620 * 13 11 10 35 35 H 1.08996 * 109.47430 * 300.00206 * 13 11 10 36 36 H 0.97001 * 126.80159 * 179.97438 * 17 15 14 37 37 H 1.09002 * 109.69863 * 44.00795 * 19 18 17 38 38 H 1.09000 * 109.69519 * 164.56332 * 19 18 17 39 39 H 1.08998 * 109.63303 * 56.12962 * 20 19 18 40 40 H 1.08998 * 109.63443 * 176.73449 * 20 19 18 41 41 H 1.07999 * 119.88501 * 359.35041 * 23 22 21 42 42 H 1.08000 * 120.02253 * 180.02562 * 24 23 22 43 43 H 1.08003 * 120.00176 * 180.13178 * 25 24 23 44 44 H 1.07999 * 119.83259 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 7 2.2030 -3.6126 -0.0015 11 6 1.7538 -4.8833 -0.0019 12 8 0.5613 -5.1049 -0.0029 13 6 2.7330 -6.0288 -0.0022 14 7 2.0005 -7.2975 -0.0032 15 6 1.6252 -7.9487 -1.1109 16 8 1.8552 -7.5546 -2.2374 17 7 0.9652 -9.0904 -0.8370 18 6 0.9059 -9.1942 0.6265 19 6 1.6315 -10.4490 1.1024 20 6 0.7382 -11.6630 0.8118 21 8 -0.4584 -11.5394 1.5811 22 6 -1.1281 -10.3585 1.5398 23 6 -2.4527 -10.3274 1.9631 24 6 -3.1593 -9.1425 1.9471 25 6 -2.5501 -7.9810 1.5085 26 6 -1.2360 -8.0083 1.0848 27 6 -0.5214 -9.1945 1.0971 28 6 1.6201 -7.9544 1.1123 29 8 1.8122 -7.6210 2.2619 30 1 -0.4850 0.8401 0.0004 31 1 0.6247 -2.5563 -0.8919 32 1 0.6240 -2.5574 0.8880 33 1 3.1567 -3.4355 -0.0010 34 1 3.3596 -5.9713 0.8879 35 1 3.3597 -5.9708 -0.8921 36 1 0.6016 -9.7198 -1.4793 37 1 2.5763 -10.5519 0.5686 38 1 1.8204 -10.3801 2.1737 39 1 0.4894 -11.6890 -0.2491 40 1 1.2611 -12.5777 1.0910 41 1 -2.9298 -11.2339 2.3051 42 1 -4.1875 -9.1220 2.2768 43 1 -3.1019 -7.0526 1.4977 44 1 -0.7629 -7.0998 0.7424 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000031643076.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:24 Heat of formation + Delta-G solvation = -106.927540 kcal Electronic energy + Delta-G solvation = -32710.054082 eV Core-core repulsion = 28206.678247 eV Total energy + Delta-G solvation = -4503.375836 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 359.136 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -44.12438 -41.52670 -40.45935 -39.89190 -38.59816 -37.64802 -36.51307 -36.06840 -34.44249 -33.17588 -31.85154 -31.27014 -30.74247 -28.78425 -27.19847 -25.12587 -24.86300 -24.39468 -23.62854 -22.36986 -21.43491 -21.23119 -19.48192 -19.37268 -18.96216 -18.20407 -18.05554 -17.54587 -17.44900 -17.15764 -16.86587 -16.64966 -16.47500 -16.38073 -16.12130 -15.73910 -15.54284 -15.41285 -14.97336 -14.83022 -14.64678 -14.52268 -14.32847 -14.05885 -13.71276 -13.47028 -13.27127 -12.97303 -12.81385 -12.72991 -12.60113 -12.26335 -12.23585 -12.09766 -11.97520 -11.75746 -11.52961 -11.29981 -10.84195 -10.83725 -10.62212 -10.06242 -9.95412 -9.33307 -8.32086 -6.49105 -0.00473 0.28326 0.34303 0.91135 1.41718 1.44254 1.53043 1.55507 1.70108 1.84736 2.19938 2.29017 2.45689 2.53314 2.80703 3.03063 3.12409 3.27294 3.57964 3.70305 3.72573 3.86763 4.06212 4.08655 4.09205 4.19346 4.26896 4.36381 4.39391 4.41880 4.56578 4.74917 4.80438 4.87781 5.03939 5.12496 5.17449 5.29918 5.39958 5.47745 5.60048 5.60482 5.66468 5.75008 5.79287 6.08705 6.31889 6.60118 6.72013 6.88948 7.17901 7.33470 8.80223 Molecular weight = 359.14amu Principal moments of inertia in cm(-1) A = 0.015938 B = 0.002635 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.352720 B =10625.418516 C =11624.380905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.986 3.014 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.254 1.254 7 C -0.556 4.556 8 H 0.087 0.913 9 C 0.270 3.730 10 N -0.698 5.698 11 C 0.479 3.521 12 O -0.591 6.591 13 C 0.103 3.897 14 N -0.563 5.563 15 C 0.708 3.292 16 O -0.567 6.567 17 N -0.694 5.694 18 C 0.178 3.822 19 C -0.151 4.151 20 C 0.064 3.936 21 O -0.313 6.313 22 C 0.157 3.843 23 C -0.152 4.152 24 C -0.060 4.060 25 C -0.166 4.166 26 C -0.087 4.087 27 C -0.186 4.186 28 C 0.538 3.462 29 O -0.478 6.478 30 H 0.269 0.731 31 H -0.014 1.014 32 H -0.013 1.013 33 H 0.413 0.587 34 H 0.155 0.845 35 H 0.153 0.847 36 H 0.451 0.549 37 H 0.126 0.874 38 H 0.101 0.899 39 H 0.083 0.917 40 H 0.157 0.843 41 H 0.164 0.836 42 H 0.165 0.835 43 H 0.124 0.876 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.527 -28.745 2.919 29.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.809 3.191 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.177 1.177 7 C -0.594 4.594 8 H 0.105 0.895 9 C 0.147 3.853 10 N -0.348 5.348 11 C 0.265 3.735 12 O -0.472 6.472 13 C -0.021 4.021 14 N -0.308 5.308 15 C 0.409 3.591 16 O -0.442 6.442 17 N -0.360 5.360 18 C 0.088 3.912 19 C -0.190 4.190 20 C -0.010 4.010 21 O -0.226 6.226 22 C 0.111 3.889 23 C -0.170 4.170 24 C -0.078 4.078 25 C -0.185 4.185 26 C -0.105 4.105 27 C -0.189 4.189 28 C 0.326 3.674 29 O -0.347 6.347 30 H 0.078 0.922 31 H 0.004 0.996 32 H 0.005 0.995 33 H 0.249 0.751 34 H 0.173 0.827 35 H 0.171 0.829 36 H 0.299 0.701 37 H 0.144 0.856 38 H 0.120 0.880 39 H 0.102 0.898 40 H 0.175 0.825 41 H 0.182 0.818 42 H 0.183 0.817 43 H 0.142 0.858 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.805 -28.477 3.055 28.778 hybrid contribution 0.186 1.817 -0.573 1.914 sum 2.991 -26.660 2.482 26.942 Atomic orbital electron populations 1.70145 1.08346 1.28606 1.49901 1.26093 0.95789 1.04014 0.93782 0.85133 0.78531 0.76801 0.78614 1.19598 1.20985 1.17719 1.21616 0.94449 0.90354 1.52988 0.89471 1.18544 0.88593 0.84168 0.94006 1.46064 1.11599 1.05007 1.72126 1.21520 0.90084 0.85522 0.76397 1.90636 1.18960 1.85382 1.52254 1.21700 0.92703 0.77944 1.09778 1.46008 1.53941 1.22476 1.08390 1.15942 0.78467 0.81154 0.83551 1.91001 1.61151 1.70720 1.21367 1.45503 1.59639 1.24082 1.06749 1.19660 0.93608 0.96311 0.81668 1.22606 1.00831 0.90790 1.04746 1.23363 0.82190 0.99087 0.96387 1.85983 1.39271 1.30676 1.66678 1.18706 0.91661 0.83684 0.94844 1.20959 0.91004 1.00409 1.04626 1.21388 1.01070 0.90533 0.94783 1.21226 0.94643 1.00197 1.02409 1.21069 0.95841 0.96535 0.97102 1.19191 0.94137 0.94437 1.11099 1.20828 0.76945 0.85115 0.84537 1.90785 1.54128 1.71317 1.18519 0.92239 0.99606 0.99495 0.75063 0.82731 0.82898 0.70120 0.85563 0.88012 0.89842 0.82533 0.81815 0.81730 0.85804 0.88904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.98 13.29 21.45 0.28 -56.70 16 2 C 0.00 0.16 5.46 84.65 0.46 0.62 16 3 Si 0.99 42.72 29.54 68.60 2.03 44.74 16 4 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 5 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 6 H -0.25 -10.15 7.11 99.48 0.71 -9.45 16 7 C -0.56 -30.53 9.28 25.60 0.24 -30.29 16 8 H 0.09 4.27 7.60 -2.91 -0.02 4.25 16 9 C 0.27 15.08 5.43 85.63 0.46 15.55 16 10 N -0.70 -29.87 5.55 -466.80 -2.59 -32.46 16 11 C 0.48 19.90 7.90 87.66 0.69 20.60 16 12 O -0.59 -30.17 15.55 -3.05 -0.05 -30.22 16 13 C 0.10 2.95 6.19 85.63 0.53 3.48 16 14 N -0.56 -16.70 2.10 -777.35 -1.63 -18.33 16 15 C 0.71 20.79 8.63 179.37 1.55 22.34 16 16 O -0.57 -20.29 17.48 -3.83 -0.07 -20.36 16 17 N -0.69 -14.51 5.73 -445.87 -2.56 -17.07 16 18 C 0.18 3.85 0.86 1.90 0.00 3.85 16 19 C -0.15 -1.85 5.21 30.62 0.16 -1.69 16 20 C 0.06 0.51 7.02 72.15 0.51 1.01 16 21 O -0.31 -4.68 10.25 -91.49 -0.94 -5.62 16 22 C 0.16 3.14 6.49 22.55 0.15 3.29 16 23 C -0.15 -2.65 9.94 22.41 0.22 -2.43 16 24 C -0.06 -1.13 10.04 22.22 0.22 -0.91 16 25 C -0.17 -4.45 10.04 22.25 0.22 -4.23 16 26 C -0.09 -2.71 9.13 22.29 0.20 -2.51 16 27 C -0.19 -4.62 5.11 -19.86 -0.10 -4.72 16 28 C 0.54 15.62 5.66 87.76 0.50 16.12 16 29 O -0.48 -16.22 17.77 -2.89 -0.05 -16.27 16 30 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 31 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 32 H -0.01 -0.81 8.14 -2.38 -0.02 -0.83 16 33 H 0.41 14.10 8.32 -92.71 -0.77 13.33 16 34 H 0.16 3.41 8.01 -2.39 -0.02 3.39 16 35 H 0.15 3.53 7.86 -2.39 -0.02 3.51 16 36 H 0.45 6.74 8.69 -92.71 -0.81 5.94 16 37 H 0.13 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.10 1.40 8.13 -2.39 -0.02 1.38 16 39 H 0.08 0.45 7.76 -2.39 -0.02 0.43 16 40 H 0.16 0.17 8.14 -2.39 -0.02 0.15 16 41 H 0.16 1.89 8.06 -2.91 -0.02 1.86 16 42 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16 43 H 0.12 3.31 8.06 -2.91 -0.02 3.29 16 44 H 0.09 3.71 6.44 -2.91 -0.02 3.69 16 Total: -1.00 -86.85 378.82 -0.05 -86.89 By element: Atomic # 1 Polarization: 25.82 SS G_CDS: -0.49 Total: 25.33 kcal Atomic # 6 Polarization: 34.05 SS G_CDS: 6.02 Total: 40.07 kcal Atomic # 7 Polarization: -118.07 SS G_CDS: -6.49 Total: -124.56 kcal Atomic # 8 Polarization: -71.36 SS G_CDS: -1.10 Total: -72.47 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.74 kcal Total: -86.85 -0.05 -86.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031643076.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.037 kcal (2) G-P(sol) polarization free energy of solvation -86.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds