Wall clock time and date at job start Tue Mar 31 2020 05:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00474 * 2 1 4 4 H 1.48497 * 109.47058 * 270.00030 * 3 2 1 5 5 H 1.48502 * 109.46679 * 29.99800 * 3 2 1 6 6 H 1.48494 * 109.47322 * 149.99789 * 3 2 1 7 7 C 1.37882 * 119.99653 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99818 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00258 * 359.97438 * 7 2 1 10 10 N 1.46495 * 109.47331 * 180.02562 * 9 7 2 11 11 C 1.34782 * 120.00147 * 180.02562 * 10 9 7 12 12 O 1.21274 * 119.99542 * 359.97438 * 11 10 9 13 13 C 1.50698 * 119.99877 * 180.02562 * 11 10 9 14 14 N 1.46498 * 109.46977 * 180.02562 * 13 11 10 15 15 C 1.33870 * 124.18962 * 269.95646 * 14 13 11 16 16 O 1.21538 * 123.79625 * 0.05736 * 15 14 13 17 17 N 1.34690 * 112.40738 * 180.02562 * 15 14 13 18 18 C 1.46817 * 106.42602 * 0.03326 * 17 15 14 19 19 C 1.52565 * 110.49454 * 118.44965 * 18 17 15 20 20 C 1.53480 * 108.36633 * 169.62743 * 19 18 17 21 21 O 1.42820 * 108.46368 * 296.45486 * 20 19 18 22 22 C 1.35822 * 118.05595 * 49.76977 * 21 20 19 23 23 C 1.39084 * 118.67546 * 161.81774 * 22 21 20 24 24 C 1.37979 * 120.21975 * 179.45852 * 23 22 21 25 25 C 1.38295 * 119.95042 * 359.97438 * 24 23 22 26 26 C 1.38097 * 119.99981 * 0.09986 * 25 24 23 27 27 C 1.38483 * 120.34592 * 0.03346 * 26 25 24 28 28 C 1.34913 * 124.19581 * 89.99569 * 14 13 11 29 29 O 1.21234 * 127.25710 * 359.93712 * 28 14 13 30 30 H 0.96998 * 119.99507 * 0.02562 * 1 2 3 31 31 H 1.08996 * 109.46955 * 60.00132 * 9 7 2 32 32 H 1.09001 * 109.46993 * 300.00441 * 9 7 2 33 33 H 0.96997 * 119.99893 * 359.97438 * 10 9 7 34 34 H 1.08996 * 109.47546 * 59.99654 * 13 11 10 35 35 H 1.09008 * 109.46805 * 299.99617 * 13 11 10 36 36 H 0.97001 * 126.78597 * 180.02562 * 17 15 14 37 37 H 1.09001 * 109.68646 * 49.90402 * 19 18 17 38 38 H 1.09009 * 109.71822 * 289.36304 * 19 18 17 39 39 H 1.08994 * 109.64207 * 176.76659 * 20 19 18 40 40 H 1.09001 * 109.81283 * 56.24663 * 20 19 18 41 41 H 1.08003 * 119.89418 * 359.48283 * 23 22 21 42 42 H 1.07997 * 120.02413 * 180.26639 * 24 23 22 43 43 H 1.08004 * 119.99903 * 180.12019 * 25 24 23 44 44 H 1.07998 * 119.82578 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2029 -3.6128 0.0027 11 6 1.7536 -4.8835 0.0033 12 8 0.5613 -5.1050 0.0035 13 6 2.7329 -6.0289 0.0049 14 7 2.0004 -7.2976 0.0047 15 6 1.6237 -7.9490 1.1119 16 8 1.8501 -7.5538 2.2388 17 7 0.9650 -9.0911 0.8367 18 6 0.9073 -9.1948 -0.6267 19 6 1.6354 -10.4482 -1.1025 20 6 1.3273 -10.6502 -2.5924 21 8 -0.0739 -10.8857 -2.7368 22 6 -0.9320 -10.0269 -2.1277 23 6 -2.2566 -9.9948 -2.5509 24 6 -3.1581 -9.1426 -1.9469 25 6 -2.7448 -8.3175 -0.9170 26 6 -1.4302 -8.3453 -0.4951 27 6 -0.5195 -9.1963 -1.0987 28 6 1.6224 -7.9547 -1.1113 29 8 1.8155 -7.6207 -2.2606 30 1 -0.4849 0.8401 -0.0004 31 1 0.6240 -2.5575 -0.8880 32 1 0.6246 -2.5563 0.8919 33 1 3.1566 -3.4355 0.0022 34 1 3.3589 -5.9705 0.8952 35 1 3.3602 -5.9718 -0.8847 36 1 0.6009 -9.7208 1.4785 37 1 1.2884 -11.3120 -0.5354 38 1 2.7095 -10.3249 -0.9630 39 1 1.8836 -11.5087 -2.9685 40 1 1.6084 -9.7580 -3.1520 41 1 -2.5806 -10.6394 -3.3546 42 1 -4.1868 -9.1234 -2.2751 43 1 -3.4503 -7.6515 -0.4424 44 1 -1.1106 -7.7000 0.3098 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000031643079.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:29 Heat of formation + Delta-G solvation = -76.991850 kcal Electronic energy + Delta-G solvation = -32765.800540 eV Core-core repulsion = 28263.722813 eV Total energy + Delta-G solvation = -4502.077727 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 359.136 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.08298 -40.60021 -38.82845 -38.67266 -37.75875 -36.57552 -35.24381 -34.22337 -32.46411 -32.29059 -30.98896 -30.42097 -29.24088 -26.94510 -26.09064 -24.34955 -23.34849 -22.97917 -22.45937 -21.56634 -20.15684 -19.78369 -18.49749 -18.14114 -17.61902 -17.25251 -16.80630 -16.38711 -16.14483 -15.84429 -15.59104 -15.34577 -15.27752 -14.90108 -14.69784 -14.57743 -14.32564 -14.17683 -14.05531 -13.80523 -13.52015 -13.09068 -12.89144 -12.77905 -12.57720 -12.12138 -12.00912 -11.77408 -11.59434 -11.34429 -11.12534 -11.01192 -10.94512 -10.89851 -10.41540 -10.32556 -10.27239 -9.83764 -9.43226 -9.12326 -9.04545 -8.77289 -8.44747 -7.97704 -6.18518 -4.25782 0.89512 1.22276 1.45671 2.00771 2.73064 2.88132 2.95302 3.16642 3.23699 3.29702 3.32148 3.41632 3.80858 3.87420 3.98637 4.04930 4.34087 4.35193 4.61444 4.71474 4.82933 4.90213 5.01697 5.06725 5.12931 5.17811 5.20068 5.21305 5.24808 5.36497 5.40536 5.46411 5.54986 5.75882 6.02212 6.19859 6.35895 6.50931 6.55410 6.84817 7.10758 7.16916 7.24663 7.32104 7.47507 7.61098 7.93023 7.95447 8.50318 8.70957 8.96352 9.40437 10.91702 Molecular weight = 359.14amu Principal moments of inertia in cm(-1) A = 0.014390 B = 0.002684 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.267416 B =10429.066757 C =11201.093524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.544 4.544 8 H 0.064 0.936 9 C 0.251 3.749 10 N -0.704 5.704 11 C 0.486 3.514 12 O -0.545 6.545 13 C 0.095 3.905 14 N -0.556 5.556 15 C 0.710 3.290 16 O -0.531 6.531 17 N -0.714 5.714 18 C 0.176 3.824 19 C -0.152 4.152 20 C 0.058 3.942 21 O -0.312 6.312 22 C 0.156 3.844 23 C -0.155 4.155 24 C -0.070 4.070 25 C -0.149 4.149 26 C -0.050 4.050 27 C -0.179 4.179 28 C 0.540 3.460 29 O -0.452 6.452 30 H 0.266 0.734 31 H 0.028 0.972 32 H 0.028 0.972 33 H 0.393 0.607 34 H 0.125 0.875 35 H 0.121 0.879 36 H 0.441 0.559 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.119 0.881 40 H 0.084 0.916 41 H 0.134 0.866 42 H 0.133 0.867 43 H 0.130 0.870 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.073 -25.761 -3.421 26.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.583 4.583 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.353 5.353 11 C 0.268 3.732 12 O -0.423 6.423 13 C -0.030 4.030 14 N -0.301 5.301 15 C 0.411 3.589 16 O -0.403 6.403 17 N -0.379 5.379 18 C 0.084 3.916 19 C -0.190 4.190 20 C -0.017 4.017 21 O -0.225 6.225 22 C 0.111 3.889 23 C -0.174 4.174 24 C -0.088 4.088 25 C -0.167 4.167 26 C -0.068 4.068 27 C -0.181 4.181 28 C 0.326 3.674 29 O -0.320 6.320 30 H 0.076 0.924 31 H 0.046 0.954 32 H 0.046 0.954 33 H 0.225 0.775 34 H 0.142 0.858 35 H 0.139 0.861 36 H 0.286 0.714 37 H 0.119 0.881 38 H 0.115 0.885 39 H 0.137 0.863 40 H 0.102 0.898 41 H 0.152 0.848 42 H 0.151 0.849 43 H 0.148 0.852 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.310 -25.408 -3.547 25.688 hybrid contribution 0.828 1.106 0.493 1.467 sum 2.139 -24.302 -3.054 24.587 Atomic orbital electron populations 1.69977 1.06135 1.27361 1.48748 1.24958 0.94928 0.99497 0.94628 0.86393 0.79619 0.82543 0.78233 1.20433 1.20990 1.19698 1.21207 0.93303 0.90329 1.53419 0.91777 1.19143 0.88214 0.81704 0.97855 1.46378 1.11394 1.05679 1.71863 1.20477 0.89623 0.84678 0.78373 1.90674 1.16406 1.84661 1.50561 1.21636 0.94232 0.80335 1.06797 1.45858 1.53773 1.22548 1.07946 1.15812 0.78396 0.80536 0.84179 1.91035 1.59437 1.69678 1.20154 1.45469 1.61110 1.25128 1.06150 1.19510 0.94043 0.95687 0.82322 1.22395 1.01992 0.96322 0.98311 1.23146 0.79305 1.04520 0.94749 1.85957 1.16742 1.49361 1.70478 1.18619 0.90324 0.89393 0.90608 1.20563 0.90862 1.02978 1.02962 1.21071 0.99357 0.93816 0.94530 1.21095 0.96023 1.00786 0.98819 1.20984 0.92889 0.94858 0.98103 1.19219 0.93578 1.03980 1.01345 1.20454 0.77370 0.84489 0.85072 1.90785 1.53305 1.70340 1.17608 0.92409 0.95418 0.95393 0.77456 0.85753 0.86058 0.71406 0.88078 0.88542 0.86325 0.89822 0.84773 0.84946 0.85185 0.85345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.16 13.29 55.43 0.74 -25.43 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.91 20.88 29.54 -169.99 -5.02 15.85 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.54 -14.74 9.28 -34.44 -0.32 -15.06 16 8 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 9 C 0.25 6.68 5.43 -5.20 -0.03 6.66 16 10 N -0.70 -14.73 5.55 -61.48 -0.34 -15.07 16 11 C 0.49 9.80 7.90 -10.98 -0.09 9.71 16 12 O -0.54 -13.19 16.43 5.56 0.09 -13.10 16 13 C 0.10 1.38 6.19 -5.20 -0.03 1.35 16 14 N -0.56 -8.19 2.10 -122.10 -0.26 -8.45 16 15 C 0.71 10.32 8.50 -87.80 -0.75 9.57 16 16 O -0.53 -9.33 17.49 5.33 0.09 -9.24 16 17 N -0.71 -7.65 5.12 -54.88 -0.28 -7.93 16 18 C 0.18 1.96 0.89 -134.16 -0.12 1.84 16 19 C -0.15 -1.13 5.32 -26.71 -0.14 -1.28 16 20 C 0.06 0.46 6.98 37.41 0.26 0.72 16 21 O -0.31 -3.20 10.26 -19.18 -0.20 -3.40 16 22 C 0.16 1.81 6.48 -39.16 -0.25 1.55 16 23 C -0.16 -1.61 9.94 -39.36 -0.39 -2.00 16 24 C -0.07 -0.70 10.04 -39.66 -0.40 -1.10 16 25 C -0.15 -1.78 10.04 -39.61 -0.40 -2.17 16 26 C -0.05 -0.68 9.22 -39.54 -0.36 -1.04 16 27 C -0.18 -2.21 4.94 -104.62 -0.52 -2.73 16 28 C 0.54 7.70 6.68 -10.71 -0.07 7.63 16 29 O -0.45 -7.33 16.29 5.60 0.09 -7.24 16 30 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.39 6.81 8.32 -40.82 -0.34 6.47 16 34 H 0.12 1.53 7.86 -51.93 -0.41 1.12 16 35 H 0.12 1.43 8.01 -51.92 -0.42 1.01 16 36 H 0.44 3.54 8.96 -40.82 -0.37 3.17 16 37 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.10 0.58 8.06 -51.92 -0.42 0.16 16 39 H 0.12 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.08 0.81 6.52 -51.93 -0.34 0.47 16 41 H 0.13 1.12 8.06 -52.48 -0.42 0.69 16 42 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 43 H 0.13 1.40 8.06 -52.48 -0.42 0.97 16 44 H 0.13 1.98 7.57 -52.49 -0.40 1.58 16 LS Contribution 378.60 15.07 5.71 5.71 Total: -1.00 -36.92 378.60 -8.26 -45.18 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -5.18 Total: 7.78 kcal Atomic # 6 Polarization: 19.02 SS G_CDS: -3.70 Total: 15.32 kcal Atomic # 7 Polarization: -56.73 SS G_CDS: -0.14 Total: -56.87 kcal Atomic # 8 Polarization: -33.05 SS G_CDS: 0.08 Total: -32.97 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.92 -8.26 -45.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031643079.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.810 kcal (2) G-P(sol) polarization free energy of solvation -36.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds