Wall clock time and date at job start Tue Mar 31 2020 05:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00474 * 2 1 4 4 H 1.48497 * 109.47058 * 270.00030 * 3 2 1 5 5 H 1.48502 * 109.46679 * 29.99800 * 3 2 1 6 6 H 1.48494 * 109.47322 * 149.99789 * 3 2 1 7 7 C 1.37882 * 119.99653 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99818 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00258 * 359.97438 * 7 2 1 10 10 N 1.46495 * 109.47331 * 180.02562 * 9 7 2 11 11 C 1.34782 * 120.00147 * 180.02562 * 10 9 7 12 12 O 1.21274 * 119.99542 * 359.97438 * 11 10 9 13 13 C 1.50698 * 119.99877 * 180.02562 * 11 10 9 14 14 N 1.46498 * 109.46977 * 180.02562 * 13 11 10 15 15 C 1.33870 * 124.18962 * 269.95646 * 14 13 11 16 16 O 1.21538 * 123.79625 * 0.05736 * 15 14 13 17 17 N 1.34690 * 112.40738 * 180.02562 * 15 14 13 18 18 C 1.46817 * 106.42602 * 0.03326 * 17 15 14 19 19 C 1.52565 * 110.49454 * 118.44965 * 18 17 15 20 20 C 1.53480 * 108.36633 * 169.62743 * 19 18 17 21 21 O 1.42820 * 108.46368 * 296.45486 * 20 19 18 22 22 C 1.35822 * 118.05595 * 49.76977 * 21 20 19 23 23 C 1.39084 * 118.67546 * 161.81774 * 22 21 20 24 24 C 1.37979 * 120.21975 * 179.45852 * 23 22 21 25 25 C 1.38295 * 119.95042 * 359.97438 * 24 23 22 26 26 C 1.38097 * 119.99981 * 0.09986 * 25 24 23 27 27 C 1.38483 * 120.34592 * 0.03346 * 26 25 24 28 28 C 1.34913 * 124.19581 * 89.99569 * 14 13 11 29 29 O 1.21234 * 127.25710 * 359.93712 * 28 14 13 30 30 H 0.96998 * 119.99507 * 0.02562 * 1 2 3 31 31 H 1.08996 * 109.46955 * 60.00132 * 9 7 2 32 32 H 1.09001 * 109.46993 * 300.00441 * 9 7 2 33 33 H 0.96997 * 119.99893 * 359.97438 * 10 9 7 34 34 H 1.08996 * 109.47546 * 59.99654 * 13 11 10 35 35 H 1.09008 * 109.46805 * 299.99617 * 13 11 10 36 36 H 0.97001 * 126.78597 * 180.02562 * 17 15 14 37 37 H 1.09001 * 109.68646 * 49.90402 * 19 18 17 38 38 H 1.09009 * 109.71822 * 289.36304 * 19 18 17 39 39 H 1.08994 * 109.64207 * 176.76659 * 20 19 18 40 40 H 1.09001 * 109.81283 * 56.24663 * 20 19 18 41 41 H 1.08003 * 119.89418 * 359.48283 * 23 22 21 42 42 H 1.07997 * 120.02413 * 180.26639 * 24 23 22 43 43 H 1.08004 * 119.99903 * 180.12019 * 25 24 23 44 44 H 1.07998 * 119.82578 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2029 -3.6128 0.0027 11 6 1.7536 -4.8835 0.0033 12 8 0.5613 -5.1050 0.0035 13 6 2.7329 -6.0289 0.0049 14 7 2.0004 -7.2976 0.0047 15 6 1.6237 -7.9490 1.1119 16 8 1.8501 -7.5538 2.2388 17 7 0.9650 -9.0911 0.8367 18 6 0.9073 -9.1948 -0.6267 19 6 1.6354 -10.4482 -1.1025 20 6 1.3273 -10.6502 -2.5924 21 8 -0.0739 -10.8857 -2.7368 22 6 -0.9320 -10.0269 -2.1277 23 6 -2.2566 -9.9948 -2.5509 24 6 -3.1581 -9.1426 -1.9469 25 6 -2.7448 -8.3175 -0.9170 26 6 -1.4302 -8.3453 -0.4951 27 6 -0.5195 -9.1963 -1.0987 28 6 1.6224 -7.9547 -1.1113 29 8 1.8155 -7.6207 -2.2606 30 1 -0.4849 0.8401 -0.0004 31 1 0.6240 -2.5575 -0.8880 32 1 0.6246 -2.5563 0.8919 33 1 3.1566 -3.4355 0.0022 34 1 3.3589 -5.9705 0.8952 35 1 3.3602 -5.9718 -0.8847 36 1 0.6009 -9.7208 1.4785 37 1 1.2884 -11.3120 -0.5354 38 1 2.7095 -10.3249 -0.9630 39 1 1.8836 -11.5087 -2.9685 40 1 1.6084 -9.7580 -3.1520 41 1 -2.5806 -10.6394 -3.3546 42 1 -4.1868 -9.1234 -2.2751 43 1 -3.4503 -7.6515 -0.4424 44 1 -1.1106 -7.7000 0.3098 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000031643079.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:28 Heat of formation + Delta-G solvation = -105.532212 kcal Electronic energy + Delta-G solvation = -32767.038143 eV Core-core repulsion = 28263.722813 eV Total energy + Delta-G solvation = -4503.315330 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 359.136 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -44.12954 -41.52346 -40.46761 -39.86365 -38.57718 -37.67979 -36.52112 -36.07256 -34.44222 -33.22296 -31.79766 -31.29210 -30.74838 -28.73740 -27.07225 -25.16608 -24.83839 -24.36744 -23.41259 -22.86000 -21.56070 -20.93267 -19.51322 -19.40021 -18.91441 -18.23944 -18.05336 -17.56551 -17.50176 -17.10944 -16.83015 -16.63148 -16.51834 -16.34369 -16.11282 -15.74176 -15.54686 -15.39701 -14.98616 -14.77519 -14.68912 -14.33199 -14.31599 -14.05445 -13.77474 -13.62980 -13.27160 -12.97179 -12.85064 -12.72814 -12.62959 -12.26366 -12.24301 -12.17400 -11.82424 -11.72225 -11.52948 -11.33033 -10.85596 -10.84031 -10.63814 -10.00266 -9.95579 -9.31713 -8.31989 -6.49083 -0.02321 0.30588 0.36477 0.91488 1.41933 1.44515 1.53215 1.55813 1.68582 1.83557 2.20076 2.29086 2.47113 2.54899 2.88753 3.03098 3.04541 3.26491 3.59282 3.69020 3.71778 3.85501 4.06394 4.09294 4.13050 4.19947 4.26299 4.38162 4.40418 4.42900 4.52950 4.73711 4.82585 4.88194 5.03828 5.13766 5.17184 5.30301 5.39864 5.46763 5.59937 5.60889 5.67671 5.75254 5.79267 6.08341 6.31079 6.60175 6.71967 6.88621 7.17913 7.33470 8.80380 Molecular weight = 359.14amu Principal moments of inertia in cm(-1) A = 0.014390 B = 0.002684 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.267416 B =10429.066757 C =11201.093524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.987 3.013 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.254 1.254 7 C -0.556 4.556 8 H 0.088 0.912 9 C 0.269 3.731 10 N -0.698 5.698 11 C 0.479 3.521 12 O -0.592 6.592 13 C 0.104 3.896 14 N -0.563 5.563 15 C 0.707 3.293 16 O -0.567 6.567 17 N -0.692 5.692 18 C 0.180 3.820 19 C -0.145 4.145 20 C 0.053 3.947 21 O -0.312 6.312 22 C 0.152 3.848 23 C -0.156 4.156 24 C -0.063 4.063 25 C -0.166 4.166 26 C -0.075 4.075 27 C -0.191 4.191 28 C 0.534 3.466 29 O -0.476 6.476 30 H 0.269 0.731 31 H -0.013 1.013 32 H -0.014 1.014 33 H 0.413 0.587 34 H 0.153 0.847 35 H 0.156 0.844 36 H 0.453 0.547 37 H 0.126 0.874 38 H 0.117 0.883 39 H 0.159 0.841 40 H 0.064 0.936 41 H 0.160 0.840 42 H 0.164 0.836 43 H 0.132 0.868 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.093 -27.513 -4.402 28.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.810 3.190 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.177 1.177 7 C -0.594 4.594 8 H 0.106 0.894 9 C 0.146 3.854 10 N -0.348 5.348 11 C 0.264 3.736 12 O -0.473 6.473 13 C -0.021 4.021 14 N -0.307 5.307 15 C 0.408 3.592 16 O -0.442 6.442 17 N -0.357 5.357 18 C 0.089 3.911 19 C -0.183 4.183 20 C -0.021 4.021 21 O -0.226 6.226 22 C 0.105 3.895 23 C -0.174 4.174 24 C -0.081 4.081 25 C -0.184 4.184 26 C -0.094 4.094 27 C -0.193 4.193 28 C 0.321 3.679 29 O -0.346 6.346 30 H 0.078 0.922 31 H 0.004 0.996 32 H 0.004 0.996 33 H 0.250 0.750 34 H 0.171 0.829 35 H 0.174 0.826 36 H 0.301 0.699 37 H 0.144 0.856 38 H 0.135 0.865 39 H 0.177 0.823 40 H 0.082 0.918 41 H 0.177 0.823 42 H 0.182 0.818 43 H 0.150 0.850 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.371 -27.229 -4.534 27.809 hybrid contribution 0.101 1.590 0.746 1.759 sum 3.472 -25.639 -3.788 26.149 Atomic orbital electron populations 1.70147 1.08362 1.28619 1.49889 1.26104 0.95790 1.04033 0.93766 0.85125 0.78514 0.76759 0.78641 1.19525 1.21020 1.17730 1.21618 0.94457 0.90331 1.53011 0.89438 1.18546 0.88612 0.84205 0.93990 1.46068 1.11596 1.05011 1.72155 1.21535 0.90082 0.85543 0.76398 1.90656 1.19026 1.85423 1.52227 1.21704 0.92663 0.77924 1.09809 1.45995 1.53922 1.22428 1.08391 1.15952 0.78480 0.81156 0.83597 1.91006 1.61129 1.70725 1.21328 1.45360 1.59662 1.24054 1.06617 1.19645 0.93656 0.95972 0.81865 1.22508 1.02796 0.94807 0.98190 1.23411 0.78374 1.05509 0.94845 1.85971 1.17724 1.48738 1.70137 1.18805 0.91194 0.89225 0.90246 1.20960 0.90448 1.02877 1.03154 1.21403 1.00886 0.92572 0.93220 1.21280 0.95606 1.01652 0.99842 1.20885 0.94259 0.95709 0.98507 1.19290 0.93769 1.04258 1.01993 1.21017 0.76935 0.85285 0.84614 1.90764 1.54247 1.71193 1.18351 0.92232 0.99554 0.99605 0.75049 0.82919 0.82629 0.69870 0.85601 0.86476 0.82331 0.91779 0.82264 0.81834 0.85013 0.88393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.98 13.29 21.45 0.28 -56.69 16 2 C 0.00 0.15 5.46 84.66 0.46 0.61 16 3 Si 0.99 42.63 29.54 68.60 2.03 44.66 16 4 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 5 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 6 H -0.25 -10.14 7.11 99.48 0.71 -9.43 16 7 C -0.56 -30.51 9.28 25.60 0.24 -30.27 16 8 H 0.09 4.28 7.60 -2.91 -0.02 4.26 16 9 C 0.27 15.08 5.43 85.63 0.46 15.54 16 10 N -0.70 -29.89 5.55 -466.80 -2.59 -32.48 16 11 C 0.48 19.91 7.90 87.66 0.69 20.61 16 12 O -0.59 -30.49 16.43 -3.01 -0.05 -30.54 16 13 C 0.10 2.94 6.19 85.63 0.53 3.47 16 14 N -0.56 -16.52 2.10 -777.32 -1.63 -18.15 16 15 C 0.71 20.67 8.50 179.36 1.52 22.20 16 16 O -0.57 -20.22 17.49 -3.84 -0.07 -20.29 16 17 N -0.69 -14.56 5.12 -445.86 -2.28 -16.85 16 18 C 0.18 3.85 0.89 1.91 0.00 3.85 16 19 C -0.14 -1.76 5.32 30.61 0.16 -1.60 16 20 C 0.05 0.70 6.98 72.14 0.50 1.20 16 21 O -0.31 -5.63 10.26 -91.55 -0.94 -6.57 16 22 C 0.15 3.30 6.48 22.54 0.15 3.44 16 23 C -0.16 -2.96 9.94 22.41 0.22 -2.74 16 24 C -0.06 -1.20 10.04 22.22 0.22 -0.97 16 25 C -0.17 -4.09 10.04 22.25 0.22 -3.87 16 26 C -0.07 -2.14 9.22 22.29 0.21 -1.94 16 27 C -0.19 -4.70 4.94 -19.87 -0.10 -4.80 16 28 C 0.53 15.09 6.68 87.77 0.59 15.68 16 29 O -0.48 -15.38 16.29 -2.89 -0.05 -15.43 16 30 H 0.27 15.34 8.31 -92.71 -0.77 14.56 16 31 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 32 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 33 H 0.41 14.07 8.32 -92.71 -0.77 13.30 16 34 H 0.15 3.50 7.86 -2.39 -0.02 3.48 16 35 H 0.16 3.35 8.01 -2.38 -0.02 3.33 16 36 H 0.45 6.99 8.96 -92.71 -0.83 6.16 16 37 H 0.13 0.97 8.14 -2.39 -0.02 0.96 16 38 H 0.12 0.99 8.06 -2.38 -0.02 0.97 16 39 H 0.16 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.06 1.13 6.52 -2.39 -0.02 1.12 16 41 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 42 H 0.16 2.00 8.06 -2.91 -0.02 1.97 16 43 H 0.13 3.04 8.06 -2.91 -0.02 3.02 16 44 H 0.10 3.34 7.57 -2.91 -0.02 3.32 16 Total: -1.00 -86.06 378.60 0.27 -85.79 By element: Atomic # 1 Polarization: 26.64 SS G_CDS: -0.52 Total: 26.13 kcal Atomic # 6 Polarization: 34.33 SS G_CDS: 6.09 Total: 40.42 kcal Atomic # 7 Polarization: -117.95 SS G_CDS: -6.22 Total: -124.17 kcal Atomic # 8 Polarization: -71.72 SS G_CDS: -1.10 Total: -72.82 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -86.06 0.27 -85.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031643079.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.742 kcal (2) G-P(sol) polarization free energy of solvation -86.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds