Wall clock time and date at job start Tue Mar 31 2020 05:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35952 * 116.99855 * 2 1 4 4 C 1.38746 * 119.98499 * 180.02562 * 3 2 1 5 5 C 1.38067 * 120.01000 * 180.02562 * 4 3 2 6 6 C 1.38853 * 119.99100 * 359.97438 * 5 4 3 7 7 N 1.40183 * 120.01352 * 180.02562 * 6 5 4 8 8 C 1.36808 * 120.05714 * 90.12919 * 7 6 5 9 9 S 1.76201 * 119.04732 * 0.02562 * 8 7 6 10 10 C 1.76192 * 100.00309 * 180.02562 * 9 8 7 11 11 H 1.07997 * 120.00252 * 359.97438 * 10 9 8 12 12 C 1.38780 * 119.99912 * 179.97438 * 10 9 8 13 13 N 1.31546 * 120.00249 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99681 * 179.97438 * 12 10 9 15 15 H 1.48495 * 109.47410 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.46943 * 120.00755 * 14 12 10 17 17 H 1.48509 * 109.46849 * 240.00119 * 14 12 10 18 18 N 1.30697 * 121.91287 * 180.02562 * 8 7 6 19 19 C 1.36163 * 121.68479 * 359.97085 * 18 8 7 20 20 C 1.40069 * 129.00291 * 180.02562 * 19 18 8 21 21 C 1.32681 * 115.82358 * 179.97438 * 20 19 18 22 22 S 1.75572 * 110.59721 * 0.02562 * 21 20 19 23 23 C 1.39273 * 118.39927 * 0.02562 * 19 18 8 24 24 C 1.34878 * 120.05214 * 270.14309 * 7 6 5 25 25 O 1.21980 * 120.58383 * 359.96097 * 24 7 6 26 26 C 1.38855 * 119.96780 * 0.27527 * 6 5 4 27 27 C 1.38069 * 119.98828 * 359.44929 * 26 6 5 28 28 H 1.09003 * 109.47409 * 299.99540 * 1 2 3 29 29 H 1.09004 * 109.47365 * 59.99524 * 1 2 3 30 30 H 1.09004 * 109.47267 * 179.97438 * 1 2 3 31 31 H 1.08002 * 119.99560 * 359.97438 * 4 3 2 32 32 H 1.08007 * 120.00416 * 179.97438 * 5 4 3 33 33 H 0.96999 * 120.00332 * 179.97438 * 13 12 10 34 34 H 1.07999 * 122.08577 * 359.71112 * 20 19 18 35 35 H 1.08000 * 124.70224 * 179.97438 * 21 20 19 36 36 H 1.08004 * 120.00341 * 179.72577 * 26 6 5 37 37 H 1.08000 * 119.99178 * 180.27471 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 6 3.4317 1.2836 -0.0005 5 6 4.0590 2.5136 0.0000 6 6 3.3031 3.6783 0.0005 7 7 3.9395 4.9273 0.0005 8 6 4.2477 5.5393 -1.1836 9 16 3.8327 4.7353 -2.6956 10 6 4.4355 5.9229 -3.8491 11 1 4.9000 6.8316 -3.4958 12 6 4.3134 5.6906 -5.2119 13 7 3.7472 4.5840 -5.6424 14 14 4.9519 6.9500 -6.4349 15 1 5.5401 8.0990 -5.7007 16 1 5.9920 6.3254 -7.2911 17 1 3.8314 7.4266 -7.2851 18 7 4.8411 6.7030 -1.2259 19 6 5.1854 7.3720 -0.0910 20 6 5.8188 8.6142 0.0423 21 6 6.0308 9.0242 1.2862 22 16 5.4317 7.8414 2.4371 23 6 4.8909 6.7868 1.1380 24 6 4.2492 5.5276 1.1680 25 8 3.9798 4.9935 2.2311 26 6 1.9164 3.6052 0.0063 27 6 1.2902 2.3747 0.0000 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 4.0196 0.3777 -0.0005 32 1 5.1376 2.5697 0.0000 33 1 3.6615 4.4218 -6.5949 34 1 6.1196 9.1995 -0.8139 35 1 6.5068 9.9560 1.5537 36 1 1.3279 4.5108 0.0112 37 1 0.2117 2.3178 0.0000 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032105207.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:25 Heat of formation + Delta-G solvation = 23.801430 kcal Electronic energy + Delta-G solvation = -26433.812491 eV Core-core repulsion = 22588.059474 eV Total energy + Delta-G solvation = -3845.753017 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 360.039 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.30938 -39.88449 -37.89464 -37.15090 -35.72979 -33.12957 -32.81331 -31.10787 -29.70303 -28.94590 -27.22362 -25.95555 -24.99705 -23.70124 -22.70859 -22.04832 -20.76971 -19.07132 -18.27386 -17.81540 -17.68620 -16.58287 -16.54282 -16.25142 -15.75957 -15.21251 -15.13459 -14.77052 -14.55219 -13.81460 -13.75904 -13.71467 -13.42288 -13.16446 -12.94053 -12.83401 -12.64383 -12.35700 -12.21117 -11.90735 -11.48869 -11.28689 -11.28523 -11.12340 -10.90659 -10.79530 -10.40420 -9.79860 -9.53194 -9.48672 -9.25740 -9.09312 -8.95304 -8.69409 -8.09027 -7.98542 -6.92681 -6.69448 -4.44292 0.62360 1.30642 1.42133 1.71447 1.84204 2.18426 2.41833 2.78060 3.06021 3.06754 3.12249 3.20648 3.24984 3.73897 3.83642 4.03320 4.55080 4.77639 4.79791 4.88872 4.96225 5.05028 5.07937 5.08922 5.29343 5.37440 5.38271 5.45151 5.50218 5.61151 5.84763 6.03233 6.08045 6.25577 6.30616 6.38156 6.53892 6.61963 6.91282 6.95347 7.35777 7.38290 8.22941 8.26166 8.39443 8.83600 10.37345 Molecular weight = 360.04amu Principal moments of inertia in cm(-1) A = 0.006500 B = 0.005306 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4306.690669 B = 5275.584908 C = 9211.638979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.316 6.316 3 C 0.138 3.862 4 C -0.141 4.141 5 C -0.049 4.049 6 C 0.084 3.916 7 N -0.482 5.482 8 C 0.329 3.671 9 S 0.199 5.801 10 C -0.543 4.543 11 H 0.118 0.882 12 C 0.078 3.922 13 N -0.867 5.867 14 Si 0.934 3.066 15 H -0.263 1.263 16 H -0.276 1.276 17 H -0.276 1.276 18 N -0.521 5.521 19 C 0.207 3.793 20 C -0.128 4.128 21 C -0.175 4.175 22 S 0.156 5.844 23 C -0.371 4.371 24 C 0.581 3.419 25 O -0.542 6.542 26 C -0.048 4.048 27 C -0.198 4.198 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.098 0.902 31 H 0.138 0.862 32 H 0.133 0.867 33 H 0.278 0.722 34 H 0.149 0.851 35 H 0.172 0.828 36 H 0.129 0.871 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.544 -1.643 9.045 9.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.229 6.229 3 C 0.093 3.907 4 C -0.160 4.160 5 C -0.069 4.069 6 C -0.006 4.006 7 N -0.204 5.204 8 C -0.036 4.036 9 S 0.443 5.557 10 C -0.692 4.692 11 H 0.136 0.864 12 C -0.133 4.133 13 N -0.501 5.501 14 Si 0.759 3.241 15 H -0.186 1.186 16 H -0.202 1.202 17 H -0.202 1.202 18 N -0.250 5.250 19 C 0.074 3.926 20 C -0.161 4.161 21 C -0.312 4.312 22 S 0.417 5.583 23 C -0.498 4.498 24 C 0.377 3.623 25 O -0.421 6.421 26 C -0.068 4.068 27 C -0.218 4.218 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.117 0.883 31 H 0.156 0.844 32 H 0.151 0.849 33 H 0.088 0.912 34 H 0.167 0.833 35 H 0.190 0.810 36 H 0.147 0.853 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.078 -3.038 10.080 10.968 hybrid contribution 0.593 1.908 -1.430 2.457 sum -2.485 -1.130 8.650 9.070 Atomic orbital electron populations 1.23077 0.78401 1.03856 1.01612 1.86071 1.21425 1.26822 1.88582 1.19037 0.92293 0.84073 0.95297 1.20198 0.91311 0.97969 1.06565 1.20967 1.00216 0.90404 0.95305 1.17396 0.91423 0.83674 1.08141 1.43802 1.52585 1.17706 1.06295 1.26561 0.92335 0.91793 0.92928 1.83945 1.63295 1.22453 0.86031 1.23699 1.45282 1.08797 0.91376 0.86375 1.25203 0.93789 0.96435 0.97848 1.69918 1.39430 1.24124 1.16609 0.85842 0.78688 0.80305 0.79283 1.18642 1.20182 1.20201 1.69064 1.23177 1.07290 1.25482 1.19167 0.92225 0.93241 0.87967 1.19548 1.02942 0.95530 0.98047 1.25596 1.05308 1.03844 0.96500 1.83696 1.58041 1.10068 1.06504 1.24035 1.23022 1.04027 0.98705 1.15792 0.79111 0.84402 0.82979 1.90874 1.56147 1.66927 1.28156 1.20929 0.92786 0.97995 0.95054 1.21014 1.00131 0.91439 1.09188 0.92620 0.92300 0.88321 0.84385 0.84874 0.91223 0.83322 0.81032 0.85335 0.84763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.32 -4.01 10.50 -19.59 -0.21 -4.22 16 3 C 0.14 1.98 6.69 -39.21 -0.26 1.72 16 4 C -0.14 -2.08 9.98 -39.46 -0.39 -2.48 16 5 C -0.05 -0.83 9.96 -39.42 -0.39 -1.22 16 6 C 0.08 1.56 3.19 -83.58 -0.27 1.30 16 7 N -0.48 -9.97 2.66 -63.16 -0.17 -10.13 16 8 C 0.33 7.28 7.75 -88.58 -0.69 6.60 16 9 S 0.20 4.62 20.40 -107.50 -2.19 2.43 16 10 C -0.54 -13.88 9.24 30.93 0.29 -13.59 16 11 H 0.12 3.07 6.51 -52.49 -0.34 2.73 16 12 C 0.08 1.96 5.49 -17.47 -0.10 1.86 16 13 N -0.87 -22.52 13.22 55.49 0.73 -21.79 16 14 Si 0.93 19.60 29.55 -169.99 -5.02 14.57 16 15 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 16 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 17 H -0.28 -5.70 7.11 56.52 0.40 -5.29 16 18 N -0.52 -11.70 8.47 -11.08 -0.09 -11.79 16 19 C 0.21 4.15 6.99 -84.87 -0.59 3.55 16 20 C -0.13 -2.04 10.16 -40.79 -0.41 -2.46 16 21 C -0.18 -2.30 11.12 28.84 0.32 -1.98 16 22 S 0.16 2.41 23.29 -107.50 -2.50 -0.10 16 23 C -0.37 -7.38 6.47 -38.01 -0.25 -7.63 16 24 C 0.58 12.47 7.43 -15.03 -0.11 12.36 16 25 O -0.54 -12.38 17.14 4.94 0.08 -12.29 16 26 C -0.05 -0.80 9.96 -39.42 -0.39 -1.19 16 27 C -0.20 -2.80 9.03 -39.46 -0.36 -3.16 16 28 H 0.06 0.42 7.66 -51.93 -0.40 0.03 16 29 H 0.06 0.48 7.66 -51.93 -0.40 0.08 16 30 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.14 1.71 8.06 -52.49 -0.42 1.28 16 32 H 0.13 2.12 8.06 -52.48 -0.42 1.70 16 33 H 0.28 6.70 8.31 -40.82 -0.34 6.36 16 34 H 0.15 2.13 8.06 -52.49 -0.42 1.71 16 35 H 0.17 1.54 8.06 -52.49 -0.42 1.12 16 36 H 0.13 2.05 8.06 -52.48 -0.42 1.63 16 37 H 0.13 1.48 6.29 -52.49 -0.33 1.15 16 LS Contribution 354.67 15.07 5.34 5.34 Total: -1.00 -30.98 354.67 -9.78 -40.76 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -3.14 Total: 2.32 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: -2.61 Total: -5.11 kcal Atomic # 7 Polarization: -44.18 SS G_CDS: 0.47 Total: -43.71 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -0.12 Total: -16.51 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.02 Total: 14.57 kcal Atomic # 16 Polarization: 7.03 SS G_CDS: -4.70 Total: 2.33 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.98 -9.78 -40.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032105207.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.562 kcal (2) G-P(sol) polarization free energy of solvation -30.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds