Wall clock time and date at job start Tue Mar 31 2020 05:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35952 * 116.99855 * 2 1 4 4 C 1.38746 * 119.98499 * 180.02562 * 3 2 1 5 5 C 1.38067 * 120.01000 * 180.02562 * 4 3 2 6 6 C 1.38853 * 119.99100 * 359.97438 * 5 4 3 7 7 N 1.40183 * 120.01352 * 180.02562 * 6 5 4 8 8 C 1.36808 * 120.05714 * 90.12919 * 7 6 5 9 9 S 1.76201 * 119.04732 * 0.02562 * 8 7 6 10 10 C 1.76192 * 100.00309 * 180.02562 * 9 8 7 11 11 H 1.07997 * 120.00252 * 359.97438 * 10 9 8 12 12 C 1.38780 * 119.99912 * 179.97438 * 10 9 8 13 13 N 1.31546 * 120.00249 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99681 * 179.97438 * 12 10 9 15 15 H 1.48495 * 109.47410 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.46943 * 120.00755 * 14 12 10 17 17 H 1.48509 * 109.46849 * 240.00119 * 14 12 10 18 18 N 1.30697 * 121.91287 * 180.02562 * 8 7 6 19 19 C 1.36163 * 121.68479 * 359.97085 * 18 8 7 20 20 C 1.40069 * 129.00291 * 180.02562 * 19 18 8 21 21 C 1.32681 * 115.82358 * 179.97438 * 20 19 18 22 22 S 1.75572 * 110.59721 * 0.02562 * 21 20 19 23 23 C 1.39273 * 118.39927 * 0.02562 * 19 18 8 24 24 C 1.34878 * 120.05214 * 270.14309 * 7 6 5 25 25 O 1.21980 * 120.58383 * 359.96097 * 24 7 6 26 26 C 1.38855 * 119.96780 * 0.27527 * 6 5 4 27 27 C 1.38069 * 119.98828 * 359.44929 * 26 6 5 28 28 H 1.09003 * 109.47409 * 299.99540 * 1 2 3 29 29 H 1.09004 * 109.47365 * 59.99524 * 1 2 3 30 30 H 1.09004 * 109.47267 * 179.97438 * 1 2 3 31 31 H 1.08002 * 119.99560 * 359.97438 * 4 3 2 32 32 H 1.08007 * 120.00416 * 179.97438 * 5 4 3 33 33 H 0.96999 * 120.00332 * 179.97438 * 13 12 10 34 34 H 1.07999 * 122.08577 * 359.71112 * 20 19 18 35 35 H 1.08000 * 124.70224 * 179.97438 * 21 20 19 36 36 H 1.08004 * 120.00341 * 179.72577 * 26 6 5 37 37 H 1.08000 * 119.99178 * 180.27471 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 6 3.4317 1.2836 -0.0005 5 6 4.0590 2.5136 0.0000 6 6 3.3031 3.6783 0.0005 7 7 3.9395 4.9273 0.0005 8 6 4.2477 5.5393 -1.1836 9 16 3.8327 4.7353 -2.6956 10 6 4.4355 5.9229 -3.8491 11 1 4.9000 6.8316 -3.4958 12 6 4.3134 5.6906 -5.2119 13 7 3.7472 4.5840 -5.6424 14 14 4.9519 6.9500 -6.4349 15 1 5.5401 8.0990 -5.7007 16 1 5.9920 6.3254 -7.2911 17 1 3.8314 7.4266 -7.2851 18 7 4.8411 6.7030 -1.2259 19 6 5.1854 7.3720 -0.0910 20 6 5.8188 8.6142 0.0423 21 6 6.0308 9.0242 1.2862 22 16 5.4317 7.8414 2.4371 23 6 4.8909 6.7868 1.1380 24 6 4.2492 5.5276 1.1680 25 8 3.9798 4.9935 2.2311 26 6 1.9164 3.6052 0.0063 27 6 1.2902 2.3747 0.0000 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 4.0196 0.3777 -0.0005 32 1 5.1376 2.5697 0.0000 33 1 3.6615 4.4218 -6.5949 34 1 6.1196 9.1995 -0.8139 35 1 6.5068 9.9560 1.5537 36 1 1.3279 4.5108 0.0112 37 1 0.2117 2.3178 0.0000 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032105207.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:24 Heat of formation + Delta-G solvation = 6.563738 kcal Electronic energy + Delta-G solvation = -26434.559973 eV Core-core repulsion = 22588.059474 eV Total energy + Delta-G solvation = -3846.500499 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 360.039 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.84400 -41.02351 -39.25046 -38.59687 -37.12169 -34.84705 -34.42662 -32.30593 -31.18284 -30.16651 -28.14978 -27.81685 -26.49386 -25.20443 -23.91653 -23.28865 -22.18065 -20.65943 -19.55167 -19.34395 -19.04785 -18.19951 -17.83717 -17.64097 -16.97854 -16.65760 -16.57433 -16.34726 -15.73036 -15.22021 -15.07578 -14.91232 -14.79196 -14.60747 -14.45863 -14.20201 -13.72117 -13.63779 -13.57780 -13.31033 -13.03532 -12.97669 -12.85491 -12.14313 -12.07735 -12.02063 -12.01155 -11.46194 -11.31775 -10.97149 -10.96106 -10.79286 -10.17985 -10.09305 -9.57256 -9.29839 -8.55112 -8.54837 -6.36255 -0.83331 0.04613 0.20506 0.31296 0.32435 0.69202 0.97212 1.29227 1.40080 1.41572 1.54423 1.58273 2.12247 2.28522 2.45813 2.51411 2.89409 2.93655 3.36543 3.59302 3.65932 3.75565 3.97373 4.06391 4.17116 4.28331 4.40006 4.43652 4.44838 4.61595 4.76018 4.84153 4.87219 4.96974 5.08508 5.12891 5.27907 5.30621 5.35732 5.49486 5.57803 6.28552 6.31838 6.63521 6.75790 6.93912 8.53199 Molecular weight = 360.04amu Principal moments of inertia in cm(-1) A = 0.006500 B = 0.005306 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4306.690669 B = 5275.584908 C = 9211.638979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.322 6.322 3 C 0.143 3.857 4 C -0.142 4.142 5 C -0.063 4.063 6 C 0.048 3.952 7 N -0.476 5.476 8 C 0.334 3.666 9 S 0.171 5.829 10 C -0.565 4.565 11 H 0.106 0.894 12 C 0.036 3.964 13 N -0.899 5.899 14 Si 0.996 3.004 15 H -0.263 1.263 16 H -0.269 1.269 17 H -0.268 1.268 18 N -0.542 5.542 19 C 0.187 3.813 20 C -0.155 4.155 21 C -0.129 4.129 22 S 0.195 5.805 23 C -0.402 4.402 24 C 0.569 3.431 25 O -0.566 6.566 26 C -0.062 4.062 27 C -0.191 4.191 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.125 0.875 31 H 0.161 0.839 32 H 0.130 0.870 33 H 0.282 0.718 34 H 0.166 0.834 35 H 0.228 0.772 36 H 0.127 0.873 37 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.431 -0.555 10.077 10.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.236 6.236 3 C 0.097 3.903 4 C -0.161 4.161 5 C -0.083 4.083 6 C -0.042 4.042 7 N -0.197 5.197 8 C -0.035 4.035 9 S 0.413 5.587 10 C -0.713 4.713 11 H 0.124 0.876 12 C -0.171 4.171 13 N -0.534 5.534 14 Si 0.817 3.183 15 H -0.187 1.187 16 H -0.194 1.194 17 H -0.193 1.193 18 N -0.271 5.271 19 C 0.054 3.946 20 C -0.186 4.186 21 C -0.266 4.266 22 S 0.457 5.543 23 C -0.528 4.528 24 C 0.367 3.633 25 O -0.447 6.447 26 C -0.082 4.082 27 C -0.210 4.210 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.143 0.857 31 H 0.178 0.822 32 H 0.148 0.852 33 H 0.092 0.908 34 H 0.183 0.817 35 H 0.244 0.756 36 H 0.145 0.855 37 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -2.960 -1.930 11.162 11.708 hybrid contribution 0.540 1.586 -1.450 2.216 sum -2.420 -0.344 9.712 10.015 Atomic orbital electron populations 1.23454 0.76074 1.06044 1.02539 1.86080 1.23795 1.25659 1.88018 1.19136 0.92318 0.84863 0.93995 1.20448 0.92130 0.97899 1.05645 1.21038 1.00218 0.90843 0.96180 1.17748 0.92429 0.83243 1.10750 1.43808 1.51897 1.18298 1.05653 1.26361 0.92266 0.91912 0.92916 1.83790 1.65388 1.23069 0.86421 1.23797 1.46090 1.09032 0.92383 0.87562 1.26017 0.93801 0.98139 0.99174 1.69986 1.40684 1.25607 1.17137 0.84935 0.78374 0.77925 0.77045 1.18715 1.19379 1.19331 1.68987 1.23019 1.07592 1.27501 1.19713 0.92998 0.94717 0.87199 1.19727 1.04326 0.94579 0.99983 1.26221 1.01748 1.04201 0.94453 1.83588 1.56589 1.08938 1.05230 1.24420 1.23130 1.04190 1.01012 1.16150 0.79236 0.85066 0.82881 1.90833 1.57516 1.67731 1.28665 1.21048 0.92172 0.99134 0.95847 1.21313 1.01748 0.90330 1.07625 0.91344 0.91648 0.85672 0.82153 0.85176 0.90825 0.81704 0.75590 0.85530 0.81560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 9.81 113.37 1.11 1.30 16 2 O -0.32 -7.60 10.50 -93.01 -0.98 -8.57 16 3 C 0.14 3.99 6.69 22.51 0.15 4.14 16 4 C -0.14 -4.21 9.98 22.35 0.22 -3.98 16 5 C -0.06 -2.22 9.96 22.38 0.22 -2.00 16 6 C 0.05 1.87 3.19 38.10 0.12 1.99 16 7 N -0.48 -20.65 2.66 -471.77 -1.25 -21.91 16 8 C 0.33 15.50 7.75 179.63 1.39 16.89 16 9 S 0.17 8.38 20.40 -56.49 -1.15 7.23 16 10 C -0.56 -29.99 9.24 67.95 0.63 -29.36 16 11 H 0.11 5.74 6.51 -2.91 -0.02 5.72 16 12 C 0.04 1.85 5.49 84.87 0.47 2.31 16 13 N -0.90 -47.89 13.22 21.64 0.29 -47.60 16 14 Si 1.00 40.60 29.55 68.60 2.03 42.63 16 15 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 16 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 17 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 18 N -0.54 -25.19 8.47 -188.96 -1.60 -26.79 16 19 C 0.19 7.48 6.99 39.16 0.27 7.75 16 20 C -0.15 -4.63 10.16 21.54 0.22 -4.41 16 21 C -0.13 -2.86 11.12 66.65 0.74 -2.12 16 22 S 0.19 5.56 23.29 -56.49 -1.32 4.24 16 23 C -0.40 -16.03 6.47 23.29 0.15 -15.88 16 24 C 0.57 25.22 7.43 84.99 0.63 25.85 16 25 O -0.57 -26.57 17.14 -5.25 -0.09 -26.66 16 26 C -0.06 -2.15 9.96 22.38 0.22 -1.93 16 27 C -0.19 -5.30 9.03 22.35 0.20 -5.10 16 28 H 0.07 0.85 7.66 -2.39 -0.02 0.84 16 29 H 0.06 0.90 7.66 -2.38 -0.02 0.88 16 30 H 0.13 1.19 8.14 -2.38 -0.02 1.17 16 31 H 0.16 3.87 8.06 -2.91 -0.02 3.85 16 32 H 0.13 4.45 8.06 -2.91 -0.02 4.43 16 33 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 34 H 0.17 4.37 8.06 -2.91 -0.02 4.34 16 35 H 0.23 2.55 8.06 -2.91 -0.02 2.52 16 36 H 0.13 4.25 8.06 -2.91 -0.02 4.22 16 37 H 0.17 3.37 6.29 -2.91 -0.02 3.36 16 Total: -1.00 -70.85 354.67 3.82 -67.03 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: 1.14 Total: 14.94 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: 6.76 Total: -4.54 kcal Atomic # 7 Polarization: -93.73 SS G_CDS: -2.57 Total: -96.29 kcal Atomic # 8 Polarization: -34.17 SS G_CDS: -1.07 Total: -35.23 kcal Atomic # 14 Polarization: 40.60 SS G_CDS: 2.03 Total: 42.63 kcal Atomic # 16 Polarization: 13.94 SS G_CDS: -2.47 Total: 11.47 kcal Total: -70.85 3.82 -67.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032105207.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.590 kcal (2) G-P(sol) polarization free energy of solvation -70.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds