Wall clock time and date at job start Tue Mar 31 2020 07:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 240.00440 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.46953 * 179.97438 * 9 7 2 11 11 C 1.33681 * 120.86785 * 269.72335 * 10 9 7 12 12 O 1.21842 * 127.03176 * 359.91435 * 11 10 9 13 13 S 1.72063 * 105.93027 * 179.82314 * 11 10 9 14 14 C 1.77077 * 94.90812 * 0.32955 * 13 11 10 15 15 C 1.34243 * 105.98945 * 359.84085 * 14 13 11 16 16 S 1.77940 * 121.66737 * 179.87806 * 15 14 13 17 17 C 1.82900 * 100.91148 * 16.15425 * 16 15 14 18 18 C 1.53309 * 107.56300 * 310.69469 * 17 16 15 19 19 H 1.08996 * 110.34124 * 310.62398 * 18 17 16 20 20 C 1.53380 * 109.04513 * 190.97356 * 18 17 16 21 21 O 1.42831 * 107.53057 * 305.27242 * 20 18 17 22 22 C 1.35816 * 118.05113 * 310.41029 * 21 20 18 23 23 C 1.39106 * 118.63282 * 197.32812 * 22 21 20 24 24 C 1.37968 * 120.22132 * 180.48589 * 23 22 21 25 25 C 1.38283 * 119.96220 * 0.02562 * 24 23 22 26 26 C 1.38111 * 119.99695 * 359.91806 * 25 24 23 27 27 C 1.38461 * 120.32140 * 359.97438 * 26 25 24 28 28 C 1.49580 * 125.80028 * 179.84289 * 14 13 11 29 29 H 1.08993 * 107.69997 * 315.11609 * 28 14 13 30 30 H 0.97000 * 119.99706 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 32 32 H 1.08992 * 109.47799 * 59.99946 * 9 7 2 33 33 H 1.09004 * 109.28686 * 191.74773 * 17 16 15 34 34 H 1.08996 * 111.06720 * 70.66963 * 17 16 15 35 35 H 1.09000 * 110.36518 * 185.64933 * 20 18 17 36 36 H 1.08996 * 109.81912 * 64.59232 * 20 18 17 37 37 H 1.07999 * 119.88859 * 0.51466 * 23 22 21 38 38 H 1.08004 * 120.02102 * 179.97438 * 24 23 22 39 39 H 1.08002 * 120.00535 * 179.88520 * 25 24 23 40 40 H 1.08001 * 119.84189 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 7 2.2030 -3.6127 -0.0027 11 6 2.6445 -4.1366 -1.1506 12 8 2.3413 -3.7916 -2.2792 13 16 3.7303 -5.3959 -0.7082 14 6 3.5301 -5.1629 1.0357 15 6 2.6611 -4.1494 1.1760 16 16 2.1567 -3.5666 2.7798 17 6 3.4484 -4.3098 3.8402 18 6 3.5523 -5.7942 3.4712 19 1 2.5631 -6.2516 3.4586 20 6 4.4192 -6.5098 4.5147 21 8 5.6664 -5.8173 4.5858 22 6 6.3158 -5.5501 3.4233 23 6 7.6658 -5.2187 3.4748 24 6 8.3551 -4.9314 2.3147 25 6 7.7031 -4.9720 1.0959 26 6 6.3631 -5.3017 1.0403 27 6 5.6663 -5.5933 2.2007 28 6 4.2088 -5.9549 2.1078 29 1 4.1463 -7.0075 1.8322 30 1 -0.4850 -0.8401 -0.0004 31 1 0.6241 -2.5574 0.8881 32 1 0.6247 -2.5564 -0.8919 33 1 3.1561 -4.2120 4.8858 34 1 4.4117 -3.8249 3.6824 35 1 4.5902 -7.5452 4.2201 36 1 3.9269 -6.4809 5.4867 37 1 8.1762 -5.1867 4.4260 38 1 9.4031 -4.6740 2.3585 39 1 8.2416 -4.7454 0.1875 40 1 5.8565 -5.3331 0.0870 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032594742.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:22 Heat of formation + Delta-G solvation = -12.859171 kcal Electronic energy + Delta-G solvation = -28059.750388 eV Core-core repulsion = 24250.522081 eV Total energy + Delta-G solvation = -3809.228307 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 361.059 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.31480 -40.04672 -37.73712 -37.12954 -35.81560 -33.45605 -31.73524 -30.68049 -30.14990 -27.85596 -27.47665 -25.77648 -24.38010 -23.34972 -22.83689 -21.89419 -20.36142 -19.29456 -18.86974 -17.85932 -17.40008 -17.07721 -16.45412 -16.06357 -15.71931 -15.43866 -15.28162 -14.88163 -14.41619 -14.31094 -13.99227 -13.85754 -13.74748 -13.58957 -13.41956 -12.83140 -12.70136 -12.41712 -12.25574 -12.05861 -11.85831 -11.67215 -11.46463 -11.23257 -11.19312 -10.91202 -10.75159 -10.55696 -10.17279 -9.96182 -9.49783 -9.45687 -8.91838 -8.72060 -8.56316 -8.27381 -8.19360 -7.12743 -6.58199 -4.32624 1.11312 1.21059 1.32367 1.34109 1.49719 1.97074 2.54120 2.70336 3.07961 3.36995 3.39514 3.43829 3.58043 3.66412 4.23101 4.24094 4.37189 4.41168 4.63133 4.67653 4.96950 5.02425 5.05598 5.08799 5.18241 5.22217 5.28911 5.31565 5.37251 5.46733 5.52945 5.72137 5.78128 5.94535 6.18823 6.25243 6.40138 6.48802 6.50604 6.66406 6.67068 7.27233 7.34885 7.65407 7.84741 8.21831 8.57559 9.35903 10.79858 Molecular weight = 361.06amu Principal moments of inertia in cm(-1) A = 0.011191 B = 0.004119 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.302751 B = 6796.318331 C = 7036.301572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.030 3.970 3 Si 1.072 2.928 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.286 1.286 7 C -0.610 4.610 8 H 0.056 0.944 9 C 0.221 3.779 10 N -0.496 5.496 11 C 0.494 3.506 12 O -0.467 6.467 13 S -0.016 6.016 14 C -0.240 4.240 15 C 0.146 3.854 16 S -0.023 6.023 17 C -0.105 4.105 18 C -0.122 4.122 19 H 0.109 0.891 20 C 0.073 3.927 21 O -0.315 6.315 22 C 0.133 3.867 23 C -0.152 4.152 24 C -0.087 4.087 25 C -0.150 4.150 26 C -0.077 4.077 27 C -0.153 4.153 28 C 0.055 3.945 29 H 0.096 0.904 30 H 0.267 0.733 31 H 0.041 0.959 32 H 0.045 0.955 33 H 0.119 0.881 34 H 0.100 0.900 35 H 0.072 0.928 36 H 0.115 0.885 37 H 0.129 0.871 38 H 0.127 0.873 39 H 0.124 0.876 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.837 -15.348 11.313 22.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.176 4.176 3 Si 0.899 3.101 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.212 1.212 7 C -0.648 4.648 8 H 0.074 0.926 9 C 0.099 3.901 10 N -0.214 5.214 11 C 0.173 3.827 12 O -0.346 6.346 13 S 0.226 5.774 14 C -0.370 4.370 15 C -0.080 4.080 16 S 0.216 5.784 17 C -0.253 4.253 18 C -0.144 4.144 19 H 0.128 0.872 20 C -0.004 4.004 21 O -0.229 6.229 22 C 0.088 3.912 23 C -0.171 4.171 24 C -0.105 4.105 25 C -0.168 4.168 26 C -0.096 4.096 27 C -0.154 4.154 28 C 0.034 3.966 29 H 0.114 0.886 30 H 0.077 0.923 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.138 0.862 34 H 0.119 0.881 35 H 0.090 0.910 36 H 0.133 0.867 37 H 0.147 0.853 38 H 0.145 0.855 39 H 0.142 0.858 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 11.162 -13.453 10.336 20.308 hybrid contribution 0.270 -1.476 -0.050 1.501 sum 11.432 -14.929 10.286 21.433 Atomic orbital electron populations 1.70831 1.06756 1.30456 1.45354 1.25831 0.96278 1.02569 0.92896 0.83497 0.74975 0.74804 0.76872 1.20372 1.21039 1.21194 1.21982 0.94697 0.90603 1.57497 0.92571 1.19922 0.87947 0.83502 0.98697 1.46175 1.40940 1.31822 1.02418 1.21104 0.86616 0.88002 0.86955 1.90922 1.60745 1.64059 1.18920 1.84382 1.51142 1.41423 1.00430 1.22784 1.11621 1.06635 0.95943 1.21561 0.98972 0.95253 0.92209 1.86541 1.34176 1.65521 0.92114 1.24018 1.02420 0.96809 1.02083 1.21985 1.01829 0.95898 0.94664 0.87246 1.23088 0.82028 0.94847 1.00394 1.85941 1.35293 1.73133 1.28509 1.18639 0.91298 0.97063 0.84184 1.20520 0.91277 1.05861 0.99412 1.20941 0.99699 0.98015 0.91831 1.21066 0.94762 1.02884 0.98076 1.21378 0.94174 0.95749 0.98310 1.19668 0.95127 1.07468 0.93149 1.17586 0.89538 0.98939 0.90516 0.88635 0.92254 0.94146 0.93701 0.86244 0.88136 0.91006 0.86661 0.85316 0.85506 0.85783 0.84767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.58 13.65 55.43 0.76 -25.82 16 2 C 0.03 0.84 5.46 -17.82 -0.10 0.75 16 3 Si 1.07 25.26 29.90 -169.99 -5.08 20.17 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.61 -17.14 9.39 -34.44 -0.32 -17.47 16 8 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 9 C 0.22 5.68 4.32 -5.19 -0.02 5.65 16 10 N -0.50 -11.18 2.59 -121.12 -0.31 -11.49 16 11 C 0.49 11.12 8.24 53.57 0.44 11.56 16 12 O -0.47 -11.95 17.49 5.06 0.09 -11.86 16 13 S -0.02 -0.27 20.30 -107.50 -2.18 -2.46 16 14 C -0.24 -3.83 5.21 -36.25 -0.19 -4.02 16 15 C 0.15 2.75 6.89 -16.48 -0.11 2.64 16 16 S -0.02 -0.38 21.01 -107.50 -2.26 -2.64 16 17 C -0.10 -1.24 5.36 37.32 0.20 -1.04 16 18 C -0.12 -1.21 2.43 -90.69 -0.22 -1.43 16 19 H 0.11 0.95 8.10 -51.93 -0.42 0.53 16 20 C 0.07 0.56 6.56 37.35 0.25 0.81 16 21 O -0.31 -3.30 9.65 -19.16 -0.18 -3.49 16 22 C 0.13 1.58 5.66 -39.16 -0.22 1.36 16 23 C -0.15 -1.66 9.94 -39.36 -0.39 -2.05 16 24 C -0.09 -0.90 10.04 -39.66 -0.40 -1.30 16 25 C -0.15 -1.76 10.04 -39.61 -0.40 -2.16 16 26 C -0.08 -1.04 9.14 -39.55 -0.36 -1.40 16 27 C -0.15 -1.96 4.96 -104.56 -0.52 -2.47 16 28 C 0.05 0.67 2.22 -94.01 -0.21 0.46 16 29 H 0.10 1.03 8.13 -51.93 -0.42 0.61 16 30 H 0.27 7.82 7.22 -40.82 -0.29 7.53 16 31 H 0.04 1.03 6.88 -51.93 -0.36 0.67 16 32 H 0.05 1.25 7.61 -51.93 -0.40 0.86 16 33 H 0.12 1.10 8.12 -51.93 -0.42 0.67 16 34 H 0.10 1.36 6.59 -51.93 -0.34 1.02 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.12 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 38 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 39 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 40 H 0.13 1.91 4.79 -43.32 -0.21 1.71 16 LS Contribution 347.48 15.07 5.24 5.24 Total: -1.00 -32.85 347.48 -10.70 -43.54 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: -4.18 Total: -1.08 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: -2.58 Total: -10.12 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: 0.44 Total: -37.31 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: -0.10 Total: -15.35 kcal Atomic # 14 Polarization: 25.26 SS G_CDS: -5.08 Total: 20.17 kcal Atomic # 16 Polarization: -0.65 SS G_CDS: -4.44 Total: -5.09 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.85 -10.70 -43.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032594742.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.686 kcal (2) G-P(sol) polarization free energy of solvation -32.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds