Wall clock time and date at job start Tue Mar 31 2020 07:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 240.00440 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.46953 * 179.97438 * 9 7 2 11 11 C 1.33681 * 120.86785 * 269.72335 * 10 9 7 12 12 O 1.21842 * 127.03176 * 359.91435 * 11 10 9 13 13 S 1.72063 * 105.93027 * 179.82314 * 11 10 9 14 14 C 1.77077 * 94.90812 * 0.32955 * 13 11 10 15 15 C 1.34243 * 105.98945 * 359.84085 * 14 13 11 16 16 S 1.77940 * 121.66737 * 179.87806 * 15 14 13 17 17 C 1.82900 * 100.91148 * 16.15425 * 16 15 14 18 18 C 1.53309 * 107.56300 * 310.69469 * 17 16 15 19 19 H 1.08996 * 110.34124 * 310.62398 * 18 17 16 20 20 C 1.53380 * 109.04513 * 190.97356 * 18 17 16 21 21 O 1.42831 * 107.53057 * 305.27242 * 20 18 17 22 22 C 1.35816 * 118.05113 * 310.41029 * 21 20 18 23 23 C 1.39106 * 118.63282 * 197.32812 * 22 21 20 24 24 C 1.37968 * 120.22132 * 180.48589 * 23 22 21 25 25 C 1.38283 * 119.96220 * 0.02562 * 24 23 22 26 26 C 1.38111 * 119.99695 * 359.91806 * 25 24 23 27 27 C 1.38461 * 120.32140 * 359.97438 * 26 25 24 28 28 C 1.49580 * 125.80028 * 179.84289 * 14 13 11 29 29 H 1.08993 * 107.69997 * 315.11609 * 28 14 13 30 30 H 0.97000 * 119.99706 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 32 32 H 1.08992 * 109.47799 * 59.99946 * 9 7 2 33 33 H 1.09004 * 109.28686 * 191.74773 * 17 16 15 34 34 H 1.08996 * 111.06720 * 70.66963 * 17 16 15 35 35 H 1.09000 * 110.36518 * 185.64933 * 20 18 17 36 36 H 1.08996 * 109.81912 * 64.59232 * 20 18 17 37 37 H 1.07999 * 119.88859 * 0.51466 * 23 22 21 38 38 H 1.08004 * 120.02102 * 179.97438 * 24 23 22 39 39 H 1.08002 * 120.00535 * 179.88520 * 25 24 23 40 40 H 1.08001 * 119.84189 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 7 2.2030 -3.6127 -0.0027 11 6 2.6445 -4.1366 -1.1506 12 8 2.3413 -3.7916 -2.2792 13 16 3.7303 -5.3959 -0.7082 14 6 3.5301 -5.1629 1.0357 15 6 2.6611 -4.1494 1.1760 16 16 2.1567 -3.5666 2.7798 17 6 3.4484 -4.3098 3.8402 18 6 3.5523 -5.7942 3.4712 19 1 2.5631 -6.2516 3.4586 20 6 4.4192 -6.5098 4.5147 21 8 5.6664 -5.8173 4.5858 22 6 6.3158 -5.5501 3.4233 23 6 7.6658 -5.2187 3.4748 24 6 8.3551 -4.9314 2.3147 25 6 7.7031 -4.9720 1.0959 26 6 6.3631 -5.3017 1.0403 27 6 5.6663 -5.5933 2.2007 28 6 4.2088 -5.9549 2.1078 29 1 4.1463 -7.0075 1.8322 30 1 -0.4850 -0.8401 -0.0004 31 1 0.6241 -2.5574 0.8881 32 1 0.6247 -2.5564 -0.8919 33 1 3.1561 -4.2120 4.8858 34 1 4.4117 -3.8249 3.6824 35 1 4.5902 -7.5452 4.2201 36 1 3.9269 -6.4809 5.4867 37 1 8.1762 -5.1867 4.4260 38 1 9.4031 -4.6740 2.3585 39 1 8.2416 -4.7454 0.1875 40 1 5.8565 -5.3331 0.0870 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032594742.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:21 Heat of formation + Delta-G solvation = -32.267511 kcal Electronic energy + Delta-G solvation = -28060.591997 eV Core-core repulsion = 24250.522081 eV Total energy + Delta-G solvation = -3810.069916 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 361.059 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.23173 -41.64849 -38.66099 -38.54089 -37.03417 -35.51873 -32.72044 -31.94812 -31.18137 -29.48813 -28.51812 -26.89502 -26.25672 -24.50086 -23.84974 -23.29892 -21.72887 -20.55834 -20.08517 -19.42076 -18.73204 -18.06461 -17.89900 -17.36098 -17.05436 -16.81921 -16.27063 -16.14226 -15.74431 -15.56260 -15.43865 -15.01045 -14.96137 -14.77809 -14.53633 -14.47091 -14.02351 -13.69524 -13.58726 -13.37981 -13.20301 -13.01671 -12.79108 -12.62908 -12.45410 -12.01180 -12.00755 -11.88793 -11.57493 -11.35269 -11.13558 -11.09367 -10.73679 -10.38427 -9.82361 -9.74962 -9.11146 -8.87081 -8.50007 -6.61592 -0.28381 -0.17687 0.00857 0.33732 0.47239 0.68351 0.99352 1.29052 1.44706 1.52130 1.72374 1.83463 2.36449 2.43739 2.77285 2.96868 3.32787 3.37590 3.49845 3.67560 3.81379 3.89311 4.17318 4.18471 4.29888 4.33103 4.38103 4.39701 4.47017 4.56390 4.57875 4.65271 4.67548 4.76161 4.83701 4.96832 5.07376 5.33242 5.48738 5.51150 5.61751 5.62454 5.84644 5.87484 6.16334 6.29487 6.48549 7.14730 8.51765 Molecular weight = 361.06amu Principal moments of inertia in cm(-1) A = 0.011191 B = 0.004119 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.302751 B = 6796.318331 C = 7036.301572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.015 4.015 3 Si 1.114 2.886 4 H -0.272 1.272 5 H -0.263 1.263 6 H -0.279 1.279 7 C -0.616 4.616 8 H 0.040 0.960 9 C 0.236 3.764 10 N -0.508 5.508 11 C 0.456 3.544 12 O -0.525 6.525 13 S 0.060 5.940 14 C -0.206 4.206 15 C 0.106 3.894 16 S -0.071 6.071 17 C -0.085 4.085 18 C -0.117 4.117 19 H 0.128 0.872 20 C 0.075 3.925 21 O -0.318 6.318 22 C 0.133 3.867 23 C -0.157 4.157 24 C -0.083 4.083 25 C -0.161 4.161 26 C -0.103 4.103 27 C -0.166 4.166 28 C 0.048 3.952 29 H 0.119 0.881 30 H 0.257 0.743 31 H 0.041 0.959 32 H 0.010 0.990 33 H 0.154 0.846 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.151 0.849 37 H 0.149 0.851 38 H 0.155 0.845 39 H 0.134 0.866 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.507 -17.015 14.597 26.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.215 4.215 3 Si 0.934 3.066 4 H -0.197 1.197 5 H -0.188 1.188 6 H -0.205 1.205 7 C -0.654 4.654 8 H 0.059 0.941 9 C 0.113 3.887 10 N -0.226 5.226 11 C 0.138 3.862 12 O -0.409 6.409 13 S 0.304 5.696 14 C -0.337 4.337 15 C -0.117 4.117 16 S 0.168 5.832 17 C -0.233 4.233 18 C -0.139 4.139 19 H 0.146 0.854 20 C -0.001 4.001 21 O -0.232 6.232 22 C 0.088 3.912 23 C -0.175 4.175 24 C -0.100 4.100 25 C -0.179 4.179 26 C -0.122 4.122 27 C -0.168 4.168 28 C 0.028 3.972 29 H 0.137 0.863 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.028 0.972 33 H 0.172 0.828 34 H 0.104 0.896 35 H 0.111 0.889 36 H 0.169 0.831 37 H 0.167 0.833 38 H 0.173 0.827 39 H 0.152 0.848 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 13.854 -15.180 13.668 24.682 hybrid contribution -0.409 -1.132 -0.963 1.541 sum 13.445 -16.312 12.705 24.663 Atomic orbital electron populations 1.70935 1.07508 1.29851 1.46998 1.27268 0.96397 1.06030 0.91818 0.82982 0.74371 0.71254 0.77960 1.19655 1.18763 1.20459 1.22124 0.93974 0.92010 1.57273 0.94128 1.19407 0.88216 0.84243 0.96828 1.46100 1.40901 1.31498 1.04077 1.21958 0.87912 0.89859 0.86500 1.90866 1.63054 1.66575 1.20432 1.84108 1.47264 1.37310 1.00883 1.23545 1.08887 1.04736 0.96483 1.21866 1.01089 0.96943 0.91773 1.86583 1.37016 1.67358 0.92228 1.24147 0.99506 0.97475 1.02149 1.22059 1.03291 0.94812 0.93748 0.85396 1.23409 0.80361 0.95111 1.01216 1.85952 1.36260 1.73362 1.27658 1.18728 0.91767 0.96664 0.84087 1.20878 0.91209 1.05003 1.00441 1.21280 1.01024 0.96668 0.91072 1.21285 0.94371 1.02890 0.99390 1.21375 0.95237 0.97720 0.97889 1.19643 0.94986 1.08586 0.93537 1.17887 0.89439 0.99213 0.90690 0.86349 0.93410 0.94156 0.97244 0.82807 0.89591 0.88876 0.83144 0.83309 0.82720 0.84766 0.86509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.16 13.65 21.45 0.29 -55.87 16 2 C -0.02 -0.87 5.46 84.66 0.46 -0.41 16 3 Si 1.11 51.37 29.90 68.60 2.05 53.42 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 6 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 7 C -0.62 -36.28 9.39 25.60 0.24 -36.04 16 8 H 0.04 2.46 7.81 -2.91 -0.02 2.44 16 9 C 0.24 12.99 4.32 85.63 0.37 13.36 16 10 N -0.51 -24.14 2.59 -655.88 -1.70 -25.84 16 11 C 0.46 21.70 8.24 129.96 1.07 22.77 16 12 O -0.52 -28.92 17.49 -4.80 -0.08 -29.01 16 13 S 0.06 2.07 20.30 -56.49 -1.15 0.93 16 14 C -0.21 -6.42 5.21 24.42 0.13 -6.29 16 15 C 0.11 4.06 6.89 82.91 0.57 4.63 16 16 S -0.07 -2.35 21.01 -56.49 -1.19 -3.53 16 17 C -0.08 -1.76 5.36 72.09 0.39 -1.38 16 18 C -0.12 -1.87 2.43 -10.84 -0.03 -1.89 16 19 H 0.13 1.66 8.10 -2.39 -0.02 1.64 16 20 C 0.08 0.74 6.56 72.11 0.47 1.21 16 21 O -0.32 -5.18 9.65 -91.49 -0.88 -6.06 16 22 C 0.13 2.68 5.66 22.54 0.13 2.81 16 23 C -0.16 -2.86 9.94 22.41 0.22 -2.63 16 24 C -0.08 -1.46 10.04 22.22 0.22 -1.24 16 25 C -0.16 -3.48 10.04 22.25 0.22 -3.26 16 26 C -0.10 -2.62 9.14 22.29 0.20 -2.42 16 27 C -0.17 -3.82 4.96 -19.83 -0.10 -3.92 16 28 C 0.05 1.05 2.22 -12.99 -0.03 1.02 16 29 H 0.12 2.10 8.13 -2.39 -0.02 2.08 16 30 H 0.26 15.85 7.22 -92.71 -0.67 15.19 16 31 H 0.04 2.20 6.88 -2.39 -0.02 2.18 16 32 H 0.01 0.58 7.61 -2.39 -0.02 0.57 16 33 H 0.15 2.16 8.12 -2.38 -0.02 2.14 16 34 H 0.09 2.11 6.59 -2.39 -0.02 2.09 16 35 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.15 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 38 H 0.16 1.80 8.06 -2.91 -0.02 1.78 16 39 H 0.13 2.49 8.06 -2.91 -0.02 2.47 16 40 H 0.12 3.24 4.79 -8.74 -0.04 3.20 16 Total: -1.00 -77.42 347.48 3.06 -74.36 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: 1.17 Total: 5.27 kcal Atomic # 6 Polarization: -18.23 SS G_CDS: 4.55 Total: -13.68 kcal Atomic # 7 Polarization: -80.30 SS G_CDS: -1.41 Total: -81.71 kcal Atomic # 8 Polarization: -34.10 SS G_CDS: -0.97 Total: -35.07 kcal Atomic # 14 Polarization: 51.37 SS G_CDS: 2.05 Total: 53.42 kcal Atomic # 16 Polarization: -0.27 SS G_CDS: -2.33 Total: -2.60 kcal Total: -77.42 3.06 -74.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032594742.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.092 kcal (2) G-P(sol) polarization free energy of solvation -77.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds