Wall clock time and date at job start Tue Mar 31 2020 07:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 120.00013 * 2 1 4 4 H 1.48506 * 109.46691 * 269.99627 * 3 2 1 5 5 H 1.48496 * 109.47373 * 29.99718 * 3 2 1 6 6 H 1.48499 * 109.47343 * 149.99923 * 3 2 1 7 7 C 1.37877 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99834 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99994 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47174 * 179.97438 * 9 7 2 11 11 C 1.33674 * 120.78704 * 269.97411 * 10 9 7 12 12 O 1.21847 * 127.03190 * 359.78479 * 11 10 9 13 13 S 1.72085 * 105.93621 * 179.78029 * 11 10 9 14 14 C 1.76832 * 94.83864 * 359.94143 * 13 11 10 15 15 C 1.34456 * 106.28372 * 0.32886 * 14 13 11 16 16 S 1.77956 * 122.22614 * 179.41742 * 15 14 13 17 17 C 1.82019 * 101.77179 * 10.83681 * 16 15 14 18 18 C 1.52889 * 107.68175 * 315.50491 * 17 16 15 19 19 H 1.09001 * 109.33511 * 314.00484 * 18 17 16 20 20 C 1.52831 * 111.55362 * 192.94120 * 18 17 16 21 21 O 1.43037 * 108.03982 * 175.41676 * 20 18 17 22 22 C 1.35797 * 118.87558 * 45.68488 * 21 20 18 23 23 C 1.39157 * 118.48686 * 166.08370 * 22 21 20 24 24 C 1.37937 * 120.31465 * 178.86207 * 23 22 21 25 25 C 1.38289 * 120.06142 * 0.57275 * 24 23 22 26 26 C 1.38141 * 119.88530 * 359.56734 * 25 24 23 27 27 C 1.38308 * 120.31193 * 0.30973 * 26 25 24 28 28 C 1.49411 * 126.55927 * 180.44607 * 14 13 11 29 29 H 1.08998 * 107.42697 * 85.62115 * 28 14 13 30 30 H 0.97006 * 119.99885 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.47223 * 59.99574 * 9 7 2 32 32 H 1.09007 * 109.47038 * 299.99446 * 9 7 2 33 33 H 1.08997 * 109.81592 * 195.95933 * 17 16 15 34 34 H 1.09002 * 109.86839 * 75.07882 * 17 16 15 35 35 H 1.08998 * 109.74796 * 55.77988 * 20 18 17 36 36 H 1.08993 * 109.78898 * 295.07637 * 20 18 17 37 37 H 1.08000 * 119.84402 * 359.10098 * 23 22 21 38 38 H 1.08001 * 119.97247 * 180.28390 * 24 23 22 39 39 H 1.08002 * 120.05985 * 179.85425 * 25 24 23 40 40 H 1.08004 * 119.84130 * 180.27760 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0463 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6126 0.0005 11 6 2.6472 -4.1330 -1.1478 12 8 2.3451 -3.7861 -2.2761 13 16 3.7330 -5.3930 -0.7068 14 6 3.5370 -5.1561 1.0346 15 6 2.6603 -4.1474 1.1815 16 16 2.1428 -3.5653 2.7816 17 6 3.3161 -4.4154 3.8833 18 6 3.4193 -5.8685 3.4194 19 1 2.4188 -6.2614 3.2381 20 6 4.1251 -6.7405 4.4573 21 8 4.0850 -8.0948 3.9989 22 6 4.3946 -8.3581 2.7032 23 6 4.6413 -9.6770 2.3345 24 6 4.9361 -9.9901 1.0238 25 6 4.9995 -8.9905 0.0703 26 6 4.7583 -7.6790 0.4309 27 6 4.4598 -7.3594 1.7430 28 6 4.2167 -5.9263 2.1196 29 1 5.1838 -5.4559 2.2972 30 1 -0.4850 0.8401 -0.0004 31 1 0.6246 -2.5570 -0.8896 32 1 0.6240 -2.5567 0.8904 33 1 2.9511 -4.3802 4.9097 34 1 4.2940 -3.9377 3.8224 35 1 3.6120 -6.6607 5.4156 36 1 5.1608 -6.4191 4.5663 37 1 4.5981 -10.4598 3.0773 38 1 5.1221 -11.0162 0.7429 39 1 5.2325 -9.2354 -0.9555 40 1 4.8035 -6.8995 -0.3153 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032594743.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:26 Heat of formation + Delta-G solvation = -8.292425 kcal Electronic energy + Delta-G solvation = -27680.631746 eV Core-core repulsion = 23871.601468 eV Total energy + Delta-G solvation = -3809.030278 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 361.059 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.17440 -39.89391 -37.78600 -37.12208 -35.85374 -33.14828 -32.05158 -30.82409 -30.20702 -27.92085 -27.39538 -25.70952 -24.58560 -23.51569 -22.46285 -21.70165 -20.38295 -19.69676 -18.92194 -17.81499 -16.97250 -16.77020 -16.65751 -16.03184 -15.71352 -15.32106 -15.09513 -14.78302 -14.72093 -14.44038 -14.16477 -13.95786 -13.82572 -13.45438 -13.34421 -12.84186 -12.61690 -12.52116 -12.37131 -11.99319 -11.67948 -11.58354 -11.42343 -11.21061 -11.12996 -10.91674 -10.83348 -10.63413 -10.32308 -9.89738 -9.86286 -9.08818 -9.03186 -8.78139 -8.61910 -8.31400 -8.18937 -7.02415 -6.23904 -4.30663 1.11230 1.17691 1.26700 1.48527 1.56836 2.02588 2.62533 2.86465 2.98335 3.22775 3.28799 3.31855 3.52841 3.66991 4.18827 4.23111 4.30866 4.38452 4.58571 4.74111 4.89839 4.96543 5.03879 5.08909 5.12081 5.20903 5.26223 5.30434 5.39094 5.42887 5.45273 5.69837 5.81357 5.90608 6.12784 6.32259 6.41269 6.48553 6.60129 6.72466 7.02791 7.24079 7.56235 7.68640 7.88003 8.05698 8.70058 9.34906 10.84942 Molecular weight = 361.06amu Principal moments of inertia in cm(-1) A = 0.015608 B = 0.003678 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.569426 B = 7610.244221 C = 8904.594743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.069 3.931 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.533 4.533 8 H 0.062 0.938 9 C 0.228 3.772 10 N -0.501 5.501 11 C 0.472 3.528 12 O -0.473 6.473 13 S 0.003 5.997 14 C -0.252 4.252 15 C 0.146 3.854 16 S -0.007 6.007 17 C -0.116 4.116 18 C -0.126 4.126 19 H 0.103 0.897 20 C 0.078 3.922 21 O -0.315 6.315 22 C 0.137 3.863 23 C -0.151 4.151 24 C -0.086 4.086 25 C -0.147 4.147 26 C -0.069 4.069 27 C -0.147 4.147 28 C 0.052 3.948 29 H 0.091 0.909 30 H 0.267 0.733 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.123 0.877 34 H 0.100 0.900 35 H 0.115 0.885 36 H 0.070 0.930 37 H 0.130 0.870 38 H 0.129 0.871 39 H 0.127 0.873 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.986 -17.378 10.982 22.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.135 4.135 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.571 4.571 8 H 0.080 0.920 9 C 0.107 3.893 10 N -0.219 5.219 11 C 0.153 3.847 12 O -0.353 6.353 13 S 0.246 5.754 14 C -0.382 4.382 15 C -0.081 4.081 16 S 0.232 5.768 17 C -0.265 4.265 18 C -0.148 4.148 19 H 0.121 0.879 20 C 0.002 3.998 21 O -0.229 6.229 22 C 0.092 3.908 23 C -0.170 4.170 24 C -0.104 4.104 25 C -0.165 4.165 26 C -0.089 4.089 27 C -0.148 4.148 28 C 0.032 3.968 29 H 0.109 0.891 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.141 0.859 34 H 0.119 0.881 35 H 0.133 0.867 36 H 0.089 0.911 37 H 0.148 0.852 38 H 0.146 0.854 39 H 0.145 0.855 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 9.291 -17.066 9.936 21.824 hybrid contribution 0.552 1.475 0.025 1.575 sum 9.842 -15.591 9.961 20.956 Atomic orbital electron populations 1.69919 1.06050 1.27578 1.49097 1.24884 0.94924 0.99356 0.94312 0.86394 0.79750 0.82366 0.78420 1.20356 1.20820 1.19607 1.21145 0.93365 0.89611 1.53006 0.92018 1.19873 0.87394 0.82090 0.99931 1.46423 1.40865 1.32233 1.02333 1.21965 0.87534 0.88276 0.86894 1.90899 1.61330 1.64022 1.19008 1.84359 1.52583 1.38363 1.00125 1.22830 1.12377 1.06947 0.96026 1.21629 0.98177 0.95939 0.92313 1.86523 1.40822 1.58204 0.91273 1.23830 1.03974 0.96365 1.02350 1.21881 1.02341 0.95383 0.95179 0.87892 1.22934 1.01033 0.78929 0.96925 1.85910 1.84211 1.28776 1.23969 1.18701 0.95919 0.93322 0.82822 1.20525 1.05376 0.93923 0.97161 1.20922 0.98016 0.99394 0.92064 1.21023 1.03162 0.92349 0.99957 1.21062 0.96805 0.96717 0.94300 1.19490 1.07226 0.93869 0.94219 1.17663 0.98173 0.90722 0.90285 0.89143 0.92296 0.92707 0.93167 0.85892 0.88135 0.86688 0.91128 0.85228 0.85354 0.85529 0.85147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.55 13.29 55.43 0.74 -24.81 16 2 C 0.07 1.91 5.46 -17.82 -0.10 1.82 16 3 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.53 -14.82 9.39 -34.44 -0.32 -15.14 16 8 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 9 C 0.23 5.94 5.00 -5.20 -0.03 5.91 16 10 N -0.50 -11.37 2.60 -121.03 -0.31 -11.69 16 11 C 0.47 10.79 8.24 53.56 0.44 11.23 16 12 O -0.47 -12.29 17.48 5.06 0.09 -12.20 16 13 S 0.00 0.05 18.37 -107.50 -1.98 -1.93 16 14 C -0.25 -4.08 6.02 -36.26 -0.22 -4.30 16 15 C 0.15 2.74 6.90 -16.36 -0.11 2.63 16 16 S -0.01 -0.12 20.89 -107.50 -2.25 -2.36 16 17 C -0.12 -1.15 5.91 37.10 0.22 -0.93 16 18 C -0.13 -1.29 1.91 -90.97 -0.17 -1.47 16 19 H 0.10 1.21 8.01 -51.93 -0.42 0.80 16 20 C 0.08 0.62 6.50 37.07 0.24 0.86 16 21 O -0.31 -3.34 10.23 -19.11 -0.20 -3.53 16 22 C 0.14 1.59 6.50 -39.07 -0.25 1.34 16 23 C -0.15 -1.54 9.93 -39.35 -0.39 -1.93 16 24 C -0.09 -0.80 10.03 -39.67 -0.40 -1.20 16 25 C -0.15 -1.55 10.05 -39.60 -0.40 -1.95 16 26 C -0.07 -0.87 8.67 -39.59 -0.34 -1.21 16 27 C -0.15 -1.84 5.54 -104.69 -0.58 -2.42 16 28 C 0.05 0.65 1.98 -94.01 -0.19 0.46 16 29 H 0.09 1.05 8.03 -51.93 -0.42 0.64 16 30 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 31 H 0.05 1.58 7.75 -51.93 -0.40 1.18 16 32 H 0.05 1.31 6.99 -51.92 -0.36 0.95 16 33 H 0.12 0.84 8.13 -51.93 -0.42 0.42 16 34 H 0.10 0.91 8.00 -51.93 -0.42 0.50 16 35 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 38 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 39 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 40 H 0.13 1.77 3.64 -21.14 -0.08 1.69 16 LS Contribution 348.86 15.07 5.26 5.26 Total: -1.00 -32.59 348.86 -10.44 -43.03 By element: Atomic # 1 Polarization: 2.33 SS G_CDS: -4.17 Total: -1.84 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: -2.60 Total: -6.30 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: 0.42 Total: -36.50 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: -0.11 Total: -15.73 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -0.07 SS G_CDS: -4.22 Total: -4.29 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.59 -10.44 -43.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032594743.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.737 kcal (2) G-P(sol) polarization free energy of solvation -32.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds