Wall clock time and date at job start Tue Mar 31 2020 07:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 120.00019 * 2 1 4 4 H 1.48496 * 109.47154 * 269.99908 * 3 2 1 5 5 H 1.48503 * 109.46949 * 29.99855 * 3 2 1 6 6 H 1.48505 * 109.47046 * 149.99524 * 3 2 1 7 7 C 1.37875 * 119.99847 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99921 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00487 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47308 * 179.97438 * 9 7 2 11 11 C 1.33687 * 120.86632 * 89.97726 * 10 9 7 12 12 O 1.21844 * 127.03799 * 359.97125 * 11 10 9 13 13 S 1.72058 * 105.93118 * 180.02562 * 11 10 9 14 14 C 1.77085 * 94.90405 * 0.02562 * 13 11 10 15 15 C 1.34233 * 105.99165 * 359.96083 * 14 13 11 16 16 S 1.75706 * 121.99707 * 181.03409 * 15 14 13 17 17 C 1.81765 * 101.28667 * 343.96777 * 16 15 14 18 18 C 1.53300 * 108.67868 * 48.32513 * 17 16 15 19 19 H 1.08998 * 109.67835 * 50.71257 * 18 17 16 20 20 C 1.53636 * 108.42687 * 170.46505 * 18 17 16 21 21 O 1.44424 * 107.46565 * 56.47666 * 20 18 17 22 22 C 1.35828 * 118.47333 * 48.75881 * 21 20 18 23 23 C 1.39100 * 118.64964 * 162.65170 * 22 21 20 24 24 C 1.37979 * 120.21749 * 179.62132 * 23 22 21 25 25 C 1.38286 * 119.96124 * 359.96459 * 24 23 22 26 26 C 1.38107 * 119.99432 * 0.08086 * 25 24 23 27 27 C 1.38457 * 120.32055 * 0.02562 * 26 25 24 28 28 C 1.49590 * 125.78446 * 179.97438 * 14 13 11 29 29 H 1.09000 * 107.68782 * 44.15113 * 28 14 13 30 30 H 0.96993 * 120.00013 * 0.02562 * 1 2 3 31 31 H 1.09006 * 109.46808 * 59.99656 * 9 7 2 32 32 H 1.08999 * 109.46948 * 299.99792 * 9 7 2 33 33 H 1.09002 * 109.62923 * 288.51772 * 17 16 15 34 34 H 1.09005 * 109.62876 * 168.13136 * 17 16 15 35 35 H 1.09004 * 109.70107 * 175.34463 * 20 18 17 36 36 H 1.09007 * 109.70029 * 295.93817 * 20 18 17 37 37 H 1.07999 * 119.88762 * 359.59210 * 23 22 21 38 38 H 1.07995 * 120.01646 * 179.97438 * 24 23 22 39 39 H 1.08001 * 119.99863 * 180.09948 * 25 24 23 40 40 H 1.08003 * 119.83445 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4401 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 2.6491 -4.1337 1.1481 12 8 2.3520 -3.7847 2.2770 13 16 3.7299 -5.3969 0.7046 14 6 3.5298 -5.1622 -1.0392 15 6 2.6612 -4.1483 -1.1785 16 16 2.1395 -3.5796 -2.7571 17 6 3.3975 -4.3244 -3.8372 18 6 3.5431 -5.8062 -3.4720 19 1 2.5606 -6.2778 -3.4528 20 6 4.4219 -6.4841 -4.5343 21 8 5.6750 -5.7676 -4.5817 22 6 6.3162 -5.5063 -3.4132 23 6 7.6621 -5.1575 -3.4545 24 6 8.3432 -4.8778 -2.2875 25 6 7.6867 -4.9433 -1.0722 26 6 6.3507 -5.2902 -1.0269 27 6 5.6623 -5.5742 -2.1942 28 6 4.2081 -5.9539 -2.1119 29 1 4.1562 -7.0056 -1.8303 30 1 -0.4850 0.8400 -0.0004 31 1 0.6247 -2.5571 -0.8897 32 1 0.6241 -2.5568 0.8903 33 1 4.3510 -3.8164 -3.6931 34 1 3.0872 -4.2326 -4.8781 35 1 4.6075 -7.5202 -4.2510 36 1 3.9204 -6.4513 -5.5016 37 1 8.1758 -5.1059 -4.4031 38 1 9.3882 -4.6077 -2.3233 39 1 8.2188 -4.7230 -0.1585 40 1 5.8404 -5.3402 -0.0763 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032594745.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:34 Heat of formation + Delta-G solvation = -10.649221 kcal Electronic energy + Delta-G solvation = -28033.561159 eV Core-core repulsion = 24224.428683 eV Total energy + Delta-G solvation = -3809.132477 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 361.059 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.15972 -39.94250 -37.63295 -37.04818 -35.72596 -33.13874 -31.73156 -30.66549 -30.12094 -27.99539 -27.53555 -25.75988 -24.63407 -23.30478 -22.78219 -21.70393 -20.25727 -19.26958 -18.76870 -17.80522 -17.13076 -16.84580 -16.38428 -15.97353 -15.64200 -15.25678 -15.23908 -14.87037 -14.55904 -14.36984 -14.11751 -13.89042 -13.62688 -13.53145 -13.30709 -12.71054 -12.60656 -12.35182 -12.19330 -11.97137 -11.74210 -11.66772 -11.37664 -11.18443 -11.13311 -10.82471 -10.79960 -10.56038 -10.30810 -9.90965 -9.83576 -9.33138 -8.90609 -8.76001 -8.61418 -8.23262 -8.19612 -7.02236 -6.23885 -4.30304 1.19683 1.28055 1.38845 1.41835 1.57447 2.05771 2.64146 2.79663 3.05663 3.23362 3.29319 3.34190 3.54637 3.71982 4.26159 4.29029 4.32044 4.42067 4.67798 4.72886 5.00689 5.06818 5.10101 5.11255 5.15310 5.26432 5.34290 5.35232 5.42238 5.51323 5.57488 5.79217 5.82350 5.99177 6.23251 6.43761 6.46155 6.54830 6.67529 6.70081 7.00651 7.29769 7.51913 7.68780 7.87243 7.97756 8.70350 9.35376 10.85060 Molecular weight = 361.06amu Principal moments of inertia in cm(-1) A = 0.011144 B = 0.004126 C = 0.003990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2511.971055 B = 6784.287749 C = 7016.245326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.070 3.930 3 Si 0.903 3.097 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.532 4.532 8 H 0.061 0.939 9 C 0.230 3.770 10 N -0.500 5.500 11 C 0.495 3.505 12 O -0.467 6.467 13 S -0.023 6.023 14 C -0.244 4.244 15 C 0.137 3.863 16 S -0.001 6.001 17 C -0.117 4.117 18 C -0.119 4.119 19 H 0.110 0.890 20 C 0.075 3.925 21 O -0.319 6.319 22 C 0.135 3.865 23 C -0.154 4.154 24 C -0.087 4.087 25 C -0.151 4.151 26 C -0.077 4.077 27 C -0.153 4.153 28 C 0.055 3.945 29 H 0.095 0.905 30 H 0.267 0.733 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.098 0.902 34 H 0.120 0.880 35 H 0.072 0.928 36 H 0.117 0.883 37 H 0.128 0.872 38 H 0.126 0.874 39 H 0.124 0.876 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.014 -14.868 -11.328 21.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.134 4.134 3 Si 0.730 3.270 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.571 4.571 8 H 0.080 0.920 9 C 0.109 3.891 10 N -0.218 5.218 11 C 0.174 3.826 12 O -0.347 6.347 13 S 0.219 5.781 14 C -0.375 4.375 15 C -0.089 4.089 16 S 0.239 5.761 17 C -0.266 4.266 18 C -0.141 4.141 19 H 0.128 0.872 20 C -0.001 4.001 21 O -0.233 6.233 22 C 0.090 3.910 23 C -0.172 4.172 24 C -0.105 4.105 25 C -0.169 4.169 26 C -0.096 4.096 27 C -0.154 4.154 28 C 0.035 3.965 29 H 0.113 0.887 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.117 0.883 34 H 0.138 0.862 35 H 0.090 0.910 36 H 0.135 0.865 37 H 0.146 0.854 38 H 0.144 0.856 39 H 0.142 0.858 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 10.376 -14.493 -10.327 20.600 hybrid contribution 0.505 1.167 0.038 1.272 sum 10.881 -13.327 -10.289 20.046 Atomic orbital electron populations 1.69914 1.06026 1.27597 1.49134 1.24866 0.94918 0.99326 0.94279 0.86400 0.79842 0.82387 0.78376 1.20193 1.20838 1.19704 1.21134 0.93378 0.89566 1.52978 0.92029 1.19892 0.87244 0.81943 0.99992 1.46386 1.40907 1.32239 1.02220 1.21092 0.86467 0.87967 0.87046 1.90920 1.60850 1.63964 1.18923 1.84346 1.51618 1.41529 1.00567 1.22741 1.12153 1.06713 0.95860 1.21320 0.99109 0.95580 0.92881 1.86024 1.34359 1.64327 0.91373 1.23951 1.03082 0.97238 1.02290 1.21961 1.01550 0.96049 0.94544 0.87186 1.23344 0.81945 0.94644 1.00207 1.86167 1.36200 1.72590 1.28376 1.18622 0.91283 0.96946 0.84126 1.20511 0.91404 1.05995 0.99304 1.20932 0.99656 0.98113 0.91826 1.21058 0.94817 1.02956 0.98068 1.21405 0.94184 0.95675 0.98316 1.19693 0.95212 1.07409 0.93095 1.17576 0.89468 0.98912 0.90535 0.88702 0.92293 0.93042 0.92620 0.88341 0.86179 0.91021 0.86466 0.85393 0.85580 0.85834 0.84667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.50 13.29 55.43 0.74 -24.76 16 2 C 0.07 1.94 5.46 -17.82 -0.10 1.85 16 3 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.53 -14.83 9.39 -34.44 -0.32 -15.15 16 8 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 9 C 0.23 5.94 5.00 -5.19 -0.03 5.91 16 10 N -0.50 -11.22 2.59 -121.83 -0.32 -11.53 16 11 C 0.50 11.12 8.24 53.57 0.44 11.56 16 12 O -0.47 -11.92 17.49 5.06 0.09 -11.84 16 13 S -0.02 -0.39 20.24 -107.50 -2.18 -2.56 16 14 C -0.24 -3.90 5.17 -36.25 -0.19 -4.09 16 15 C 0.14 2.58 6.81 -16.48 -0.11 2.46 16 16 S 0.00 -0.02 20.82 -107.50 -2.24 -2.26 16 17 C -0.12 -1.38 5.26 37.31 0.20 -1.18 16 18 C -0.12 -1.18 2.49 -90.58 -0.23 -1.41 16 19 H 0.11 0.95 8.12 -51.93 -0.42 0.52 16 20 C 0.08 0.58 6.64 37.49 0.25 0.83 16 21 O -0.32 -3.41 9.70 -19.20 -0.19 -3.60 16 22 C 0.14 1.64 5.73 -39.17 -0.22 1.41 16 23 C -0.15 -1.72 9.94 -39.36 -0.39 -2.11 16 24 C -0.09 -0.93 10.04 -39.66 -0.40 -1.33 16 25 C -0.15 -1.80 10.04 -39.61 -0.40 -2.20 16 26 C -0.08 -1.05 9.11 -39.55 -0.36 -1.41 16 27 C -0.15 -1.98 5.00 -104.53 -0.52 -2.50 16 28 C 0.06 0.68 2.24 -93.99 -0.21 0.47 16 29 H 0.10 1.04 8.13 -51.93 -0.42 0.62 16 30 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 31 H 0.05 1.33 6.96 -51.93 -0.36 0.97 16 32 H 0.06 1.58 7.76 -51.93 -0.40 1.18 16 33 H 0.10 1.33 6.66 -51.93 -0.35 0.99 16 34 H 0.12 1.09 8.11 -51.93 -0.42 0.67 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.12 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 38 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 39 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 40 H 0.14 1.95 4.71 -41.44 -0.20 1.75 16 LS Contribution 348.58 15.07 5.25 5.25 Total: -1.00 -32.01 348.58 -10.68 -42.69 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: -4.23 Total: -1.09 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -2.59 Total: -6.89 kcal Atomic # 7 Polarization: -36.72 SS G_CDS: 0.42 Total: -36.30 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: -0.10 Total: -15.43 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -0.41 SS G_CDS: -4.41 Total: -4.82 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.01 -10.68 -42.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032594745.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.040 kcal (2) G-P(sol) polarization free energy of solvation -32.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds