Wall clock time and date at job start Tue Mar 31 2020 07:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 120.00019 * 2 1 4 4 H 1.48496 * 109.47154 * 269.99908 * 3 2 1 5 5 H 1.48503 * 109.46949 * 29.99855 * 3 2 1 6 6 H 1.48505 * 109.47046 * 149.99524 * 3 2 1 7 7 C 1.37875 * 119.99847 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99921 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00487 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47308 * 179.97438 * 9 7 2 11 11 C 1.33687 * 120.86632 * 89.97726 * 10 9 7 12 12 O 1.21844 * 127.03799 * 359.97125 * 11 10 9 13 13 S 1.72058 * 105.93118 * 180.02562 * 11 10 9 14 14 C 1.77085 * 94.90405 * 0.02562 * 13 11 10 15 15 C 1.34233 * 105.99165 * 359.96083 * 14 13 11 16 16 S 1.75706 * 121.99707 * 181.03409 * 15 14 13 17 17 C 1.81765 * 101.28667 * 343.96777 * 16 15 14 18 18 C 1.53300 * 108.67868 * 48.32513 * 17 16 15 19 19 H 1.08998 * 109.67835 * 50.71257 * 18 17 16 20 20 C 1.53636 * 108.42687 * 170.46505 * 18 17 16 21 21 O 1.44424 * 107.46565 * 56.47666 * 20 18 17 22 22 C 1.35828 * 118.47333 * 48.75881 * 21 20 18 23 23 C 1.39100 * 118.64964 * 162.65170 * 22 21 20 24 24 C 1.37979 * 120.21749 * 179.62132 * 23 22 21 25 25 C 1.38286 * 119.96124 * 359.96459 * 24 23 22 26 26 C 1.38107 * 119.99432 * 0.08086 * 25 24 23 27 27 C 1.38457 * 120.32055 * 0.02562 * 26 25 24 28 28 C 1.49590 * 125.78446 * 179.97438 * 14 13 11 29 29 H 1.09000 * 107.68782 * 44.15113 * 28 14 13 30 30 H 0.96993 * 120.00013 * 0.02562 * 1 2 3 31 31 H 1.09006 * 109.46808 * 59.99656 * 9 7 2 32 32 H 1.08999 * 109.46948 * 299.99792 * 9 7 2 33 33 H 1.09002 * 109.62923 * 288.51772 * 17 16 15 34 34 H 1.09005 * 109.62876 * 168.13136 * 17 16 15 35 35 H 1.09004 * 109.70107 * 175.34463 * 20 18 17 36 36 H 1.09007 * 109.70029 * 295.93817 * 20 18 17 37 37 H 1.07999 * 119.88762 * 359.59210 * 23 22 21 38 38 H 1.07995 * 120.01646 * 179.97438 * 24 23 22 39 39 H 1.08001 * 119.99863 * 180.09948 * 25 24 23 40 40 H 1.08003 * 119.83445 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4401 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 2.6491 -4.1337 1.1481 12 8 2.3520 -3.7847 2.2770 13 16 3.7299 -5.3969 0.7046 14 6 3.5298 -5.1622 -1.0392 15 6 2.6612 -4.1483 -1.1785 16 16 2.1395 -3.5796 -2.7571 17 6 3.3975 -4.3244 -3.8372 18 6 3.5431 -5.8062 -3.4720 19 1 2.5606 -6.2778 -3.4528 20 6 4.4219 -6.4841 -4.5343 21 8 5.6750 -5.7676 -4.5817 22 6 6.3162 -5.5063 -3.4132 23 6 7.6621 -5.1575 -3.4545 24 6 8.3432 -4.8778 -2.2875 25 6 7.6867 -4.9433 -1.0722 26 6 6.3507 -5.2902 -1.0269 27 6 5.6623 -5.5742 -2.1942 28 6 4.2081 -5.9539 -2.1119 29 1 4.1562 -7.0056 -1.8303 30 1 -0.4850 0.8400 -0.0004 31 1 0.6247 -2.5571 -0.8897 32 1 0.6241 -2.5568 0.8903 33 1 4.3510 -3.8164 -3.6931 34 1 3.0872 -4.2326 -4.8781 35 1 4.6075 -7.5202 -4.2510 36 1 3.9204 -6.4513 -5.5016 37 1 8.1758 -5.1059 -4.4031 38 1 9.3882 -4.6077 -2.3233 39 1 8.2188 -4.7230 -0.1585 40 1 5.8404 -5.3402 -0.0763 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032594745.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:34 Heat of formation + Delta-G solvation = -29.328284 kcal Electronic energy + Delta-G solvation = -28034.371144 eV Core-core repulsion = 24224.428683 eV Total energy + Delta-G solvation = -3809.942461 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 361.059 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.10370 -41.52655 -38.59065 -38.43299 -36.92877 -35.19304 -32.73608 -32.00049 -31.14032 -29.69476 -28.49220 -26.88827 -26.45099 -24.40315 -23.76683 -23.13511 -21.65874 -20.48468 -20.02665 -19.02278 -18.67525 -18.03940 -17.76148 -17.23781 -17.03530 -16.75578 -16.47679 -16.21630 -15.95735 -15.39247 -15.27124 -14.92756 -14.90897 -14.58987 -14.47793 -14.42870 -13.87112 -13.60604 -13.55345 -13.28240 -13.07056 -13.00007 -12.74010 -12.69098 -12.45165 -12.38196 -12.01290 -11.92247 -11.70321 -11.51567 -11.03853 -11.01606 -10.75280 -10.37105 -9.78799 -9.71071 -9.08056 -8.42746 -8.35076 -6.52916 -0.18876 -0.06043 0.08827 0.36919 0.50218 0.76342 1.08631 1.32136 1.33778 1.39872 1.44534 1.94776 2.30535 2.33462 2.80153 2.94514 3.38889 3.41140 3.53909 3.73556 3.84930 3.96491 4.20832 4.24591 4.34026 4.40695 4.47507 4.54984 4.59440 4.60870 4.68368 4.70648 4.80082 4.80578 4.96919 5.00226 5.10465 5.35880 5.50228 5.54066 5.64546 5.73936 5.76371 5.85937 6.25601 6.49208 6.51719 7.16461 8.71262 Molecular weight = 361.06amu Principal moments of inertia in cm(-1) A = 0.011144 B = 0.004126 C = 0.003990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2511.971055 B = 6784.287749 C = 7016.245326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.024 3.976 3 Si 0.966 3.034 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.276 1.276 7 C -0.546 4.546 8 H 0.046 0.954 9 C 0.249 3.751 10 N -0.511 5.511 11 C 0.457 3.543 12 O -0.525 6.525 13 S 0.051 5.949 14 C -0.212 4.212 15 C 0.099 3.901 16 S -0.047 6.047 17 C -0.097 4.097 18 C -0.115 4.115 19 H 0.130 0.870 20 C 0.077 3.923 21 O -0.324 6.324 22 C 0.135 3.865 23 C -0.159 4.159 24 C -0.083 4.083 25 C -0.163 4.163 26 C -0.103 4.103 27 C -0.166 4.166 28 C 0.049 3.951 29 H 0.118 0.882 30 H 0.273 0.727 31 H 0.047 0.953 32 H 0.015 0.985 33 H 0.082 0.918 34 H 0.156 0.844 35 H 0.093 0.907 36 H 0.154 0.846 37 H 0.148 0.852 38 H 0.154 0.846 39 H 0.134 0.866 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.421 -16.312 -14.652 25.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.177 4.177 3 Si 0.790 3.210 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.201 1.201 7 C -0.584 4.584 8 H 0.065 0.935 9 C 0.126 3.874 10 N -0.229 5.229 11 C 0.139 3.861 12 O -0.409 6.409 13 S 0.295 5.705 14 C -0.343 4.343 15 C -0.124 4.124 16 S 0.193 5.807 17 C -0.245 4.245 18 C -0.136 4.136 19 H 0.148 0.852 20 C 0.001 3.999 21 O -0.238 6.238 22 C 0.090 3.910 23 C -0.177 4.177 24 C -0.101 4.101 25 C -0.181 4.181 26 C -0.122 4.122 27 C -0.168 4.168 28 C 0.029 3.971 29 H 0.135 0.865 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.033 0.967 33 H 0.101 0.899 34 H 0.173 0.827 35 H 0.111 0.889 36 H 0.171 0.829 37 H 0.166 0.834 38 H 0.172 0.828 39 H 0.152 0.848 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 12.801 -15.980 -13.698 24.635 hybrid contribution -0.109 1.464 0.964 1.756 sum 12.692 -14.516 -12.735 23.107 Atomic orbital electron populations 1.70007 1.07324 1.28746 1.49455 1.25709 0.95799 1.02658 0.93580 0.85431 0.78233 0.78211 0.79136 1.18461 1.19803 1.20148 1.21241 0.92701 0.90949 1.53481 0.93533 1.19316 0.87483 0.82872 0.97680 1.46280 1.40859 1.31919 1.03871 1.21918 0.87737 0.89801 0.86596 1.90862 1.63151 1.66461 1.20436 1.84073 1.47846 1.37483 1.01103 1.23489 1.09514 1.04914 0.96349 1.21622 1.01126 0.97192 0.92433 1.86057 1.36994 1.66164 0.91520 1.24081 1.00207 0.97885 1.02326 1.22051 1.03001 0.94977 0.93608 0.85217 1.23688 0.80215 0.94928 1.01022 1.86173 1.37259 1.72863 1.27505 1.18709 0.91731 0.96523 0.84068 1.20867 0.91374 1.05190 1.00311 1.21266 1.00951 0.96812 0.91088 1.21276 0.94459 1.02998 0.99366 1.21402 0.95224 0.97609 0.97925 1.19678 0.95161 1.08478 0.93444 1.17874 0.89283 0.99155 0.90781 0.86482 0.91805 0.93493 0.96696 0.89902 0.82664 0.88910 0.82853 0.83426 0.82824 0.84835 0.86376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.32 13.29 21.45 0.28 -54.04 16 2 C 0.02 1.35 5.46 84.65 0.46 1.82 16 3 Si 0.97 45.04 29.54 68.60 2.03 47.07 16 4 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 5 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 6 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 7 C -0.55 -31.96 9.39 25.60 0.24 -31.72 16 8 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 9 C 0.25 13.79 5.00 85.63 0.43 14.22 16 10 N -0.51 -24.32 2.59 -658.13 -1.71 -26.03 16 11 C 0.46 21.85 8.24 129.96 1.07 22.92 16 12 O -0.52 -28.96 17.49 -4.81 -0.08 -29.04 16 13 S 0.05 1.78 20.24 -56.49 -1.14 0.63 16 14 C -0.21 -6.63 5.17 24.43 0.13 -6.50 16 15 C 0.10 3.81 6.81 82.91 0.56 4.37 16 16 S -0.05 -1.56 20.82 -56.49 -1.18 -2.74 16 17 C -0.10 -2.01 5.26 72.08 0.38 -1.63 16 18 C -0.11 -1.82 2.49 -10.77 -0.03 -1.85 16 19 H 0.13 1.66 8.12 -2.39 -0.02 1.64 16 20 C 0.08 0.77 6.64 72.20 0.48 1.24 16 21 O -0.32 -5.44 9.70 -91.62 -0.89 -6.33 16 22 C 0.14 2.81 5.73 22.54 0.13 2.94 16 23 C -0.16 -3.01 9.94 22.42 0.22 -2.79 16 24 C -0.08 -1.54 10.04 22.22 0.22 -1.31 16 25 C -0.16 -3.62 10.04 22.25 0.22 -3.40 16 26 C -0.10 -2.66 9.11 22.29 0.20 -2.46 16 27 C -0.17 -3.91 5.00 -19.81 -0.10 -4.01 16 28 C 0.05 1.09 2.24 -12.98 -0.03 1.06 16 29 H 0.12 2.12 8.13 -2.39 -0.02 2.10 16 30 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 31 H 0.05 2.60 6.96 -2.38 -0.02 2.59 16 32 H 0.01 0.93 7.76 -2.39 -0.02 0.91 16 33 H 0.08 2.04 6.66 -2.39 -0.02 2.03 16 34 H 0.16 2.14 8.11 -2.39 -0.02 2.12 16 35 H 0.09 0.64 8.14 -2.38 -0.02 0.62 16 36 H 0.15 0.51 8.14 -2.38 -0.02 0.49 16 37 H 0.15 2.17 8.06 -2.91 -0.02 2.14 16 38 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 39 H 0.13 2.57 8.06 -2.91 -0.02 2.54 16 40 H 0.12 3.34 4.71 -9.93 -0.05 3.29 16 Total: -1.00 -75.61 348.58 2.97 -72.64 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: 1.06 Total: 4.94 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: 4.60 Total: -7.09 kcal Atomic # 7 Polarization: -78.64 SS G_CDS: -1.42 Total: -80.07 kcal Atomic # 8 Polarization: -34.40 SS G_CDS: -0.97 Total: -35.37 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Atomic # 16 Polarization: 0.21 SS G_CDS: -2.32 Total: -2.11 kcal Total: -75.61 2.97 -72.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032594745.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.311 kcal (2) G-P(sol) polarization free energy of solvation -75.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds