Wall clock time and date at job start Tue Mar 31 2020 07:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46727 * 2 1 4 4 N 1.46499 * 109.47161 * 119.99707 * 2 1 3 5 5 C 1.34772 * 120.00192 * 274.99966 * 4 2 1 6 6 O 1.21609 * 119.99971 * 0.02562 * 5 4 2 7 7 C 1.47427 * 119.99644 * 179.97438 * 5 4 2 8 8 C 1.39678 * 120.22010 * 0.02562 * 7 5 4 9 9 C 1.37801 * 119.93948 * 180.02562 * 8 7 5 10 10 C 1.38653 * 120.38439 * 0.02562 * 9 8 7 11 11 C 1.37915 * 120.43805 * 359.97438 * 10 9 8 12 12 C 1.39108 * 120.04653 * 359.72582 * 11 10 9 13 13 S 1.76208 * 120.18739 * 180.27800 * 12 11 10 14 14 C 1.76198 * 99.99974 * 6.86202 * 13 12 11 15 15 H 1.07998 * 119.99809 * 5.66715 * 14 13 12 16 16 C 1.38804 * 119.99984 * 185.65812 * 14 13 12 17 17 N 1.31561 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00079 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47572 * 59.99993 * 18 16 14 20 20 H 1.48504 * 109.47163 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.46968 * 299.99544 * 18 16 14 22 22 C 1.50697 * 109.47086 * 240.00118 * 2 1 3 23 23 C 1.38261 * 119.99361 * 280.02173 * 22 2 1 24 24 C 1.38214 * 120.02828 * 179.97438 * 23 22 2 25 25 C 1.38233 * 120.01282 * 0.02562 * 24 23 22 26 26 C 1.38334 * 119.98853 * 359.76648 * 25 24 23 27 27 Cl 1.73597 * 120.01523 * 180.27486 * 26 25 24 28 28 C 1.38189 * 119.99608 * 99.99494 * 22 2 1 29 29 H 1.09004 * 109.47208 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46814 * 300.00162 * 1 2 3 31 31 H 1.08995 * 109.47359 * 60.00042 * 1 2 3 32 32 H 0.97003 * 119.99230 * 94.99954 * 4 2 1 33 33 H 1.08002 * 120.02647 * 0.02562 * 8 7 5 34 34 H 1.08004 * 119.80885 * 179.97438 * 9 8 7 35 35 H 1.08002 * 119.78539 * 179.97438 * 10 9 8 36 36 H 1.08003 * 119.97246 * 180.02562 * 11 10 9 37 37 H 0.96998 * 120.00013 * 179.97438 * 17 16 14 38 38 H 1.07999 * 119.98704 * 359.97438 * 23 22 2 39 39 H 1.08008 * 119.99592 * 180.02562 * 24 23 22 40 40 H 1.08010 * 120.00598 * 180.02562 * 25 24 23 41 41 H 1.08000 * 120.00685 * 0.03063 * 28 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.1471 -0.0182 2.3571 6 8 1.8574 1.1616 2.4118 7 6 2.6380 -0.7134 3.5609 8 6 2.9715 -2.0685 3.5034 9 6 3.4293 -2.7127 4.6322 10 6 3.5611 -2.0235 5.8281 11 6 3.2363 -0.6852 5.9028 12 6 2.7784 -0.0156 4.7727 13 16 2.3694 1.6960 4.8621 14 6 2.9170 2.0565 6.4976 15 1 3.4387 1.3041 7.0704 16 6 2.6779 3.3074 7.0497 17 7 2.0420 4.2237 6.3519 18 14 3.2590 3.6897 8.7833 19 1 4.7350 3.5424 8.8545 20 1 2.8825 5.0824 9.1357 21 1 2.6209 2.7483 9.7382 22 6 2.0323 -0.7104 -1.2305 23 6 2.0663 -2.0921 -1.2654 24 6 2.5263 -2.7444 -2.3937 25 6 2.9534 -2.0155 -3.4879 26 6 2.9157 -0.6331 -3.4553 27 17 3.4451 0.2828 -4.8316 28 6 2.4585 0.0193 -2.3239 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 2.2490 -1.6317 1.1526 33 1 2.8706 -2.6109 2.5749 34 1 3.6861 -3.7607 4.5854 35 1 3.9204 -2.5381 6.7071 36 1 3.3423 -0.1557 6.8381 37 1 1.8746 5.0977 6.7379 38 1 1.7331 -2.6620 -0.4106 39 1 2.5522 -3.8238 -2.4206 40 1 3.3125 -2.5254 -4.3698 41 1 2.4320 1.0986 -2.2965 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032973793.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:44 Heat of formation + Delta-G solvation = 7.661600 kcal Electronic energy + Delta-G solvation = -25978.195489 eV Core-core repulsion = 22167.813323 eV Total energy + Delta-G solvation = -3810.382166 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 361.064 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.25937 -39.20425 -37.56919 -36.79807 -35.28389 -32.76668 -32.15106 -31.06805 -30.31679 -30.28235 -29.09052 -25.83870 -24.50035 -23.32950 -22.92927 -21.99261 -20.98713 -19.95045 -18.48551 -17.56285 -16.91864 -16.24998 -15.92158 -15.62342 -15.17342 -15.09937 -14.63889 -14.56573 -14.12337 -13.98040 -13.84924 -13.74258 -13.51608 -13.07606 -12.96737 -12.81281 -12.38560 -12.01871 -11.92646 -11.75428 -11.60605 -11.56422 -11.37049 -11.23016 -11.19277 -10.97010 -10.90744 -10.34664 -9.84764 -9.68084 -9.52339 -9.26641 -9.02177 -8.85590 -8.74672 -8.36155 -8.09142 -6.55474 -6.47364 -4.18159 0.81272 0.91974 1.50609 1.82371 1.99755 3.09672 3.13155 3.17443 3.21609 3.40065 3.47295 3.52342 4.05416 4.28079 4.46477 4.49054 4.70644 4.86673 4.93662 5.04933 5.07726 5.11379 5.25469 5.31045 5.37832 5.41529 5.51074 5.57915 5.69283 5.82827 5.88418 5.92345 5.98080 6.08738 6.18295 6.22660 6.36580 6.44865 6.56974 6.71559 6.82674 7.00581 7.11334 7.43022 7.57125 7.83626 8.14507 8.74109 8.98752 10.55825 Molecular weight = 361.06amu Principal moments of inertia in cm(-1) A = 0.014234 B = 0.002346 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.610846 B =11933.527219 C =13165.053583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.185 3.815 3 H 0.100 0.900 4 N -0.734 5.734 5 C 0.555 3.445 6 O -0.507 6.507 7 C -0.178 4.178 8 C -0.061 4.061 9 C -0.187 4.187 10 C -0.076 4.076 11 C -0.153 4.153 12 C -0.057 4.057 13 S 0.187 5.813 14 C -0.597 4.597 15 H 0.090 0.910 16 C 0.084 3.916 17 N -0.858 5.858 18 Si 0.919 3.081 19 H -0.270 1.270 20 H -0.280 1.280 21 H -0.270 1.270 22 C -0.071 4.071 23 C -0.110 4.110 24 C -0.103 4.103 25 C -0.114 4.114 26 C -0.031 4.031 27 Cl -0.071 7.071 28 C -0.099 4.099 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.394 0.606 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.139 0.861 37 H 0.276 0.724 38 H 0.129 0.871 39 H 0.133 0.867 40 H 0.132 0.868 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.169 -14.551 -16.978 22.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.080 3.920 3 H 0.118 0.882 4 N -0.389 5.389 5 C 0.344 3.656 6 O -0.383 6.383 7 C -0.193 4.193 8 C -0.081 4.081 9 C -0.212 4.212 10 C -0.099 4.099 11 C -0.178 4.178 12 C -0.177 4.177 13 S 0.452 5.548 14 C -0.743 4.743 15 H 0.108 0.892 16 C -0.127 4.127 17 N -0.490 5.490 18 Si 0.744 3.256 19 H -0.195 1.195 20 H -0.205 1.205 21 H -0.195 1.195 22 C -0.071 4.071 23 C -0.129 4.129 24 C -0.121 4.121 25 C -0.133 4.133 26 C -0.057 4.057 27 Cl -0.042 7.042 28 C -0.118 4.118 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.230 0.770 33 H 0.127 0.873 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.156 0.844 37 H 0.086 0.914 38 H 0.146 0.854 39 H 0.151 0.849 40 H 0.150 0.850 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.669 -12.203 -17.781 21.576 hybrid contribution 1.144 -1.165 1.812 2.439 sum 0.475 -13.368 -15.969 20.831 Atomic orbital electron populations 1.22180 0.94037 1.02314 1.03108 1.19695 0.94281 0.97013 0.81007 0.88171 1.45986 1.69997 1.13723 1.09211 1.18308 0.77932 0.86605 0.82713 1.90786 1.48745 1.15040 1.83773 1.19072 1.13069 0.94346 0.92839 1.20870 0.96831 0.92928 0.97461 1.20625 1.07661 0.99349 0.93517 1.21088 0.97323 0.94321 0.97125 1.21440 1.02858 0.94551 0.98951 1.23092 0.97426 1.03151 0.93993 1.84735 1.63865 0.92824 1.13392 1.24021 1.43619 1.02503 1.04200 0.89196 1.25095 0.93639 0.94964 0.99017 1.69965 1.36588 1.05045 1.37426 0.86207 0.79541 0.77808 0.82058 1.19466 1.20542 1.19484 1.19992 0.98042 0.93851 0.95256 1.21073 0.99412 0.93833 0.98541 1.21095 0.98198 1.00217 0.92616 1.21068 1.00757 0.91778 0.99711 1.20898 1.02757 0.92261 0.89830 1.98379 1.88942 1.74310 1.42607 1.20944 0.98520 1.00870 0.91472 0.92440 0.90860 0.91716 0.77039 0.87342 0.87085 0.87012 0.84370 0.91449 0.85354 0.84890 0.84990 0.84507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.79 9.46 37.16 0.35 -1.44 16 2 C 0.18 2.25 2.78 -69.08 -0.19 2.05 16 3 H 0.10 1.41 7.44 -51.93 -0.39 1.02 16 4 N -0.73 -9.93 4.98 -56.01 -0.28 -10.20 16 5 C 0.55 10.32 7.71 -12.52 -0.10 10.22 16 6 O -0.51 -11.37 13.43 5.27 0.07 -11.30 16 7 C -0.18 -3.42 5.89 -104.75 -0.62 -4.03 16 8 C -0.06 -0.93 9.53 -39.20 -0.37 -1.30 16 9 C -0.19 -2.79 10.02 -39.59 -0.40 -3.19 16 10 C -0.08 -1.28 10.03 -39.55 -0.40 -1.67 16 11 C -0.15 -3.14 9.22 -39.38 -0.36 -3.50 16 12 C -0.06 -1.27 6.15 -38.39 -0.24 -1.50 16 13 S 0.19 4.94 18.56 -107.50 -2.00 2.95 16 14 C -0.60 -16.30 9.00 30.94 0.28 -16.02 16 15 H 0.09 2.32 4.98 -52.49 -0.26 2.06 16 16 C 0.08 2.28 5.49 -17.46 -0.10 2.19 16 17 N -0.86 -24.54 13.22 55.49 0.73 -23.81 16 18 Si 0.92 20.53 29.55 -169.99 -5.02 15.50 16 19 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 20 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 21 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 22 C -0.07 -0.71 4.95 -104.63 -0.52 -1.23 16 23 C -0.11 -0.92 9.05 -39.58 -0.36 -1.28 16 24 C -0.10 -0.75 10.04 -39.59 -0.40 -1.15 16 25 C -0.11 -0.91 9.83 -39.55 -0.39 -1.30 16 26 C -0.03 -0.29 6.32 -39.50 -0.25 -0.54 16 27 Cl -0.07 -0.65 28.96 -51.86 -1.50 -2.16 16 28 C -0.10 -0.99 9.45 -39.55 -0.37 -1.36 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.39 4.25 4.90 -40.82 -0.20 4.05 16 33 H 0.11 1.23 6.40 -52.49 -0.34 0.89 16 34 H 0.11 1.31 8.06 -52.48 -0.42 0.88 16 35 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 36 H 0.14 2.96 5.04 -52.48 -0.26 2.70 16 37 H 0.28 7.32 8.31 -40.82 -0.34 6.98 16 38 H 0.13 0.87 6.92 -52.49 -0.36 0.51 16 39 H 0.13 0.64 8.06 -52.48 -0.42 0.21 16 40 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 41 H 0.14 1.30 8.04 -52.49 -0.42 0.87 16 LS Contribution 373.63 15.07 5.63 5.63 Total: -1.00 -31.41 373.63 -11.12 -42.53 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -4.33 Total: 5.91 kcal Atomic # 6 Polarization: -20.64 SS G_CDS: -4.42 Total: -25.06 kcal Atomic # 7 Polarization: -34.47 SS G_CDS: 0.45 Total: -34.01 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.07 Total: -11.30 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: 4.94 SS G_CDS: -2.00 Total: 2.95 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.50 Total: -2.16 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.41 -11.12 -42.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032973793.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.192 kcal (2) G-P(sol) polarization free energy of solvation -31.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds