Wall clock time and date at job start Tue Mar 31 2020 07:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46727 * 2 1 4 4 N 1.46499 * 109.47161 * 119.99707 * 2 1 3 5 5 C 1.34772 * 120.00192 * 274.99966 * 4 2 1 6 6 O 1.21609 * 119.99971 * 0.02562 * 5 4 2 7 7 C 1.47427 * 119.99644 * 179.97438 * 5 4 2 8 8 C 1.39678 * 120.22010 * 0.02562 * 7 5 4 9 9 C 1.37801 * 119.93948 * 180.02562 * 8 7 5 10 10 C 1.38653 * 120.38439 * 0.02562 * 9 8 7 11 11 C 1.37915 * 120.43805 * 359.97438 * 10 9 8 12 12 C 1.39108 * 120.04653 * 359.72582 * 11 10 9 13 13 S 1.76208 * 120.18739 * 180.27800 * 12 11 10 14 14 C 1.76198 * 99.99974 * 6.86202 * 13 12 11 15 15 H 1.07998 * 119.99809 * 5.66715 * 14 13 12 16 16 C 1.38804 * 119.99984 * 185.65812 * 14 13 12 17 17 N 1.31561 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00079 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47572 * 59.99993 * 18 16 14 20 20 H 1.48504 * 109.47163 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.46968 * 299.99544 * 18 16 14 22 22 C 1.50697 * 109.47086 * 240.00118 * 2 1 3 23 23 C 1.38261 * 119.99361 * 280.02173 * 22 2 1 24 24 C 1.38214 * 120.02828 * 179.97438 * 23 22 2 25 25 C 1.38233 * 120.01282 * 0.02562 * 24 23 22 26 26 C 1.38334 * 119.98853 * 359.76648 * 25 24 23 27 27 Cl 1.73597 * 120.01523 * 180.27486 * 26 25 24 28 28 C 1.38189 * 119.99608 * 99.99494 * 22 2 1 29 29 H 1.09004 * 109.47208 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46814 * 300.00162 * 1 2 3 31 31 H 1.08995 * 109.47359 * 60.00042 * 1 2 3 32 32 H 0.97003 * 119.99230 * 94.99954 * 4 2 1 33 33 H 1.08002 * 120.02647 * 0.02562 * 8 7 5 34 34 H 1.08004 * 119.80885 * 179.97438 * 9 8 7 35 35 H 1.08002 * 119.78539 * 179.97438 * 10 9 8 36 36 H 1.08003 * 119.97246 * 180.02562 * 11 10 9 37 37 H 0.96998 * 120.00013 * 179.97438 * 17 16 14 38 38 H 1.07999 * 119.98704 * 359.97438 * 23 22 2 39 39 H 1.08008 * 119.99592 * 180.02562 * 24 23 22 40 40 H 1.08010 * 120.00598 * 180.02562 * 25 24 23 41 41 H 1.08000 * 120.00685 * 0.03063 * 28 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.1471 -0.0182 2.3571 6 8 1.8574 1.1616 2.4118 7 6 2.6380 -0.7134 3.5609 8 6 2.9715 -2.0685 3.5034 9 6 3.4293 -2.7127 4.6322 10 6 3.5611 -2.0235 5.8281 11 6 3.2363 -0.6852 5.9028 12 6 2.7784 -0.0156 4.7727 13 16 2.3694 1.6960 4.8621 14 6 2.9170 2.0565 6.4976 15 1 3.4387 1.3041 7.0704 16 6 2.6779 3.3074 7.0497 17 7 2.0420 4.2237 6.3519 18 14 3.2590 3.6897 8.7833 19 1 4.7350 3.5424 8.8545 20 1 2.8825 5.0824 9.1357 21 1 2.6209 2.7483 9.7382 22 6 2.0323 -0.7104 -1.2305 23 6 2.0663 -2.0921 -1.2654 24 6 2.5263 -2.7444 -2.3937 25 6 2.9534 -2.0155 -3.4879 26 6 2.9157 -0.6331 -3.4553 27 17 3.4451 0.2828 -4.8316 28 6 2.4585 0.0193 -2.3239 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 2.2490 -1.6317 1.1526 33 1 2.8706 -2.6109 2.5749 34 1 3.6861 -3.7607 4.5854 35 1 3.9204 -2.5381 6.7071 36 1 3.3423 -0.1557 6.8381 37 1 1.8746 5.0977 6.7379 38 1 1.7331 -2.6620 -0.4106 39 1 2.5522 -3.8238 -2.4206 40 1 3.3125 -2.5254 -4.3698 41 1 2.4320 1.0986 -2.2965 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032973793.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:43 Heat of formation + Delta-G solvation = -9.989857 kcal Electronic energy + Delta-G solvation = -25978.960913 eV Core-core repulsion = 22167.813323 eV Total energy + Delta-G solvation = -3811.147591 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 361.064 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.35210 -40.28142 -38.95495 -37.57918 -36.40104 -34.75997 -33.33725 -31.86917 -31.76578 -31.37310 -30.06358 -27.83363 -25.60393 -24.37586 -23.74249 -23.40064 -22.05086 -21.25583 -20.03769 -18.99107 -17.96215 -17.50086 -17.11923 -16.94798 -16.45581 -16.18209 -15.92004 -15.84595 -15.41211 -15.30381 -14.90919 -14.69161 -14.62550 -14.46046 -14.32787 -13.93849 -13.46024 -13.29481 -13.21166 -12.97185 -12.90525 -12.76257 -12.55347 -12.43485 -12.31384 -12.19968 -12.05886 -11.71182 -11.48537 -11.38889 -11.26430 -10.40410 -10.23292 -9.92654 -9.89126 -9.76194 -9.67000 -8.45852 -8.44593 -6.23626 0.05015 0.13892 0.25034 0.55738 1.13452 1.26623 1.37698 1.43737 1.65443 2.03544 2.14570 2.26311 2.65485 2.88246 3.05829 3.25400 3.45306 3.85651 3.92776 4.02132 4.09369 4.20423 4.22507 4.28002 4.32359 4.46298 4.59925 4.63837 4.67074 4.75660 4.86673 4.90893 4.94246 5.12590 5.19922 5.25735 5.34252 5.36662 5.37656 5.46788 5.57017 5.61967 5.69246 5.81509 6.10689 6.17514 6.62032 6.96358 7.36625 8.60505 Molecular weight = 361.06amu Principal moments of inertia in cm(-1) A = 0.014234 B = 0.002346 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.610846 B =11933.527219 C =13165.053583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.187 3.813 3 H 0.070 0.930 4 N -0.708 5.708 5 C 0.549 3.451 6 O -0.553 6.553 7 C -0.182 4.182 8 C -0.053 4.053 9 C -0.157 4.157 10 C -0.070 4.070 11 C -0.176 4.176 12 C -0.073 4.073 13 S 0.065 5.935 14 C -0.603 4.603 15 H 0.094 0.906 16 C 0.024 3.976 17 N -0.905 5.905 18 Si 0.992 3.008 19 H -0.262 1.262 20 H -0.274 1.274 21 H -0.260 1.260 22 C -0.080 4.080 23 C -0.109 4.109 24 C -0.094 4.094 25 C -0.112 4.112 26 C -0.043 4.043 27 Cl -0.076 7.076 28 C -0.114 4.114 29 H 0.079 0.921 30 H 0.039 0.961 31 H 0.077 0.923 32 H 0.411 0.589 33 H 0.162 0.838 34 H 0.167 0.833 35 H 0.149 0.851 36 H 0.118 0.882 37 H 0.275 0.725 38 H 0.151 0.849 39 H 0.168 0.832 40 H 0.152 0.848 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.362 -20.455 -17.854 27.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.082 3.918 3 H 0.088 0.912 4 N -0.363 5.363 5 C 0.338 3.662 6 O -0.433 6.433 7 C -0.195 4.195 8 C -0.073 4.073 9 C -0.179 4.179 10 C -0.091 4.091 11 C -0.201 4.201 12 C -0.191 4.191 13 S 0.324 5.676 14 C -0.749 4.749 15 H 0.112 0.888 16 C -0.181 4.181 17 N -0.540 5.540 18 Si 0.813 3.187 19 H -0.187 1.187 20 H -0.199 1.199 21 H -0.184 1.184 22 C -0.081 4.081 23 C -0.127 4.127 24 C -0.111 4.111 25 C -0.131 4.131 26 C -0.070 4.070 27 Cl -0.047 7.047 28 C -0.134 4.134 29 H 0.098 0.902 30 H 0.059 0.941 31 H 0.096 0.904 32 H 0.251 0.749 33 H 0.179 0.821 34 H 0.185 0.815 35 H 0.166 0.834 36 H 0.135 0.865 37 H 0.085 0.915 38 H 0.168 0.832 39 H 0.186 0.814 40 H 0.170 0.830 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.547 -18.248 -18.709 26.140 hybrid contribution 0.830 0.229 1.828 2.021 sum 1.377 -18.018 -16.880 24.729 Atomic orbital electron populations 1.22110 0.93378 1.03380 1.02136 1.19647 0.94774 0.95897 0.81480 0.91221 1.45746 1.68270 1.14266 1.08062 1.18483 0.77563 0.86173 0.83973 1.90792 1.50678 1.17298 1.84507 1.19475 1.12035 0.96154 0.91836 1.21443 0.94813 0.90876 1.00175 1.21329 1.03275 1.01557 0.91787 1.21545 0.95498 0.92410 0.99636 1.21450 1.04406 0.96556 0.97697 1.22996 0.99275 1.00549 0.96261 1.84920 1.69099 0.98572 1.15037 1.24220 1.43705 1.02966 1.04048 0.88826 1.26139 0.93848 0.94684 1.03461 1.70126 1.38916 1.05503 1.39474 0.85104 0.79193 0.77828 0.76593 1.18662 1.19919 1.18399 1.19727 0.99632 0.94793 0.93978 1.21330 0.98780 0.92759 0.99812 1.21474 0.96415 1.01841 0.91413 1.21411 0.99817 0.91058 1.00813 1.21020 1.03359 0.93073 0.89510 1.98377 1.89004 1.74666 1.42702 1.20949 0.99433 1.00748 0.92226 0.90210 0.94145 0.90425 0.74948 0.82077 0.81547 0.83352 0.86458 0.91538 0.83153 0.81421 0.83032 0.85465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 9.46 71.98 0.68 -2.76 16 2 C 0.19 4.53 2.78 44.25 0.12 4.65 16 3 H 0.07 2.14 7.44 -2.39 -0.02 2.12 16 4 N -0.71 -18.16 4.98 -449.37 -2.24 -20.40 16 5 C 0.55 20.81 7.71 86.66 0.67 21.48 16 6 O -0.55 -26.90 13.43 -4.06 -0.05 -26.95 16 7 C -0.18 -6.82 5.89 -19.95 -0.12 -6.93 16 8 C -0.05 -1.36 9.53 22.51 0.21 -1.14 16 9 C -0.16 -3.64 10.02 22.27 0.22 -3.41 16 10 C -0.07 -2.05 10.03 22.29 0.22 -1.83 16 11 C -0.18 -7.23 9.22 22.40 0.21 -7.02 16 12 C -0.07 -3.37 6.15 23.04 0.14 -3.23 16 13 S 0.06 3.75 18.56 -56.49 -1.05 2.70 16 14 C -0.60 -35.32 9.00 67.96 0.61 -34.71 16 15 H 0.09 5.16 4.98 -2.91 -0.01 5.15 16 16 C 0.02 1.40 5.49 84.87 0.47 1.87 16 17 N -0.91 -55.78 13.22 21.65 0.29 -55.50 16 18 Si 0.99 44.09 29.55 68.60 2.03 46.12 16 19 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 20 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 21 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 22 C -0.08 -1.48 4.95 -19.87 -0.10 -1.58 16 23 C -0.11 -1.36 9.05 22.27 0.20 -1.15 16 24 C -0.09 -0.91 10.04 22.26 0.22 -0.68 16 25 C -0.11 -1.41 9.83 22.29 0.22 -1.19 16 26 C -0.04 -0.74 6.32 22.32 0.14 -0.60 16 27 Cl -0.08 -1.35 28.96 -2.72 -0.08 -1.43 16 28 C -0.11 -2.24 9.45 22.29 0.21 -2.03 16 29 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.04 1.18 8.14 -2.38 -0.02 1.16 16 31 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.41 7.18 4.90 -92.71 -0.45 6.72 16 33 H 0.16 2.41 6.40 -2.91 -0.02 2.39 16 34 H 0.17 2.28 8.06 -2.91 -0.02 2.26 16 35 H 0.15 3.30 8.06 -2.91 -0.02 3.27 16 36 H 0.12 5.25 5.04 -2.91 -0.01 5.23 16 37 H 0.28 15.71 8.31 -92.71 -0.77 14.94 16 38 H 0.15 1.16 6.92 -2.91 -0.02 1.14 16 39 H 0.17 0.51 8.06 -2.91 -0.02 0.49 16 40 H 0.15 1.28 8.06 -2.91 -0.02 1.26 16 41 H 0.13 2.60 8.04 -2.91 -0.02 2.58 16 Total: -1.00 -79.69 373.63 3.87 -75.82 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: 0.64 Total: 19.91 kcal Atomic # 6 Polarization: -44.62 SS G_CDS: 4.34 Total: -40.28 kcal Atomic # 7 Polarization: -73.94 SS G_CDS: -1.95 Total: -75.89 kcal Atomic # 8 Polarization: -26.90 SS G_CDS: -0.05 Total: -26.95 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 16 Polarization: 3.75 SS G_CDS: -1.05 Total: 2.70 kcal Atomic # 17 Polarization: -1.35 SS G_CDS: -0.08 Total: -1.43 kcal Total: -79.69 3.87 -75.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032973793.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.829 kcal (2) G-P(sol) polarization free energy of solvation -79.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds