Wall clock time and date at job start Tue Mar 31 2020 06:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31490 * 1 3 3 Si 1.86802 * 119.99926 * 2 1 4 4 H 1.48502 * 109.46882 * 269.99804 * 3 2 1 5 5 H 1.48503 * 109.47426 * 29.99744 * 3 2 1 6 6 H 1.48494 * 109.47290 * 149.99971 * 3 2 1 7 7 C 1.38747 * 120.00363 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99499 * 0.02562 * 7 2 1 9 9 O 1.34774 * 120.00078 * 180.02562 * 7 2 1 10 10 C 1.35564 * 116.99667 * 185.11214 * 9 7 2 11 11 C 1.39159 * 119.92671 * 353.74496 * 10 9 7 12 12 C 1.37635 * 120.07915 * 180.02562 * 11 10 9 13 13 C 1.39806 * 119.92304 * 0.02562 * 12 11 10 14 14 C 1.47681 * 120.07758 * 180.02562 * 13 12 11 15 15 O 1.21800 * 119.99813 * 359.97438 * 14 13 12 16 16 C 1.41814 * 119.99814 * 179.97438 * 14 13 12 17 17 C 1.35227 * 119.99692 * 186.47372 * 16 14 13 18 18 C 1.46891 * 120.00041 * 14.75561 * 17 16 14 19 19 C 1.40047 * 120.12000 * 218.93273 * 18 17 16 20 20 C 1.37632 * 119.88089 * 179.97438 * 19 18 17 21 21 C 1.39044 * 120.12187 * 0.25727 * 20 19 18 22 22 O 1.35720 * 119.88380 * 179.72211 * 21 20 19 23 23 C 1.42899 * 117.00109 * 179.97438 * 22 21 20 24 24 F 1.39898 * 109.47523 * 300.00173 * 23 22 21 25 25 F 1.39904 * 109.46856 * 60.00421 * 23 22 21 26 26 C 1.39050 * 120.23337 * 359.48655 * 21 20 19 27 27 C 1.37633 * 120.12335 * 0.51035 * 26 21 20 28 28 C 1.39802 * 119.84528 * 0.27137 * 13 12 11 29 29 C 1.37637 * 119.92021 * 359.47225 * 28 13 12 30 30 H 0.96992 * 120.00245 * 0.02562 * 1 2 3 31 31 H 1.08005 * 119.95876 * 359.97207 * 11 10 9 32 32 H 1.08004 * 120.04294 * 179.97438 * 12 11 10 33 33 H 1.07994 * 120.00096 * 6.47541 * 16 14 13 34 34 H 1.07999 * 119.99960 * 194.75617 * 17 16 14 35 35 H 1.07995 * 120.05521 * 359.95561 * 19 18 17 36 36 H 1.08002 * 119.93581 * 179.97438 * 20 19 18 37 37 H 1.09003 * 109.47236 * 180.02562 * 23 22 21 38 38 H 1.08005 * 119.93927 * 180.23602 * 26 21 20 39 39 H 1.08003 * 120.06374 * 179.76763 * 27 26 21 40 40 H 1.07998 * 120.03557 * 179.70624 * 28 13 12 41 41 H 1.08006 * 119.96090 * 180.25094 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3149 0.0000 0.0000 3 14 2.2489 1.6178 0.0000 4 1 2.4964 2.0464 -1.4001 5 1 1.4463 2.6528 0.7000 6 1 3.5464 1.4403 0.7000 7 6 2.0087 -1.2015 0.0005 8 1 1.4687 -2.1369 0.0005 9 8 3.3564 -1.2015 0.0011 10 6 3.9719 -2.4046 -0.1061 11 6 3.2189 -3.5745 -0.0788 12 6 3.8406 -4.7977 -0.1868 13 6 5.2304 -4.8640 -0.3235 14 6 5.9009 -6.1746 -0.4402 15 8 5.2431 -7.1994 -0.4169 16 6 7.3107 -6.2399 -0.5792 17 6 7.9123 -7.4274 -0.8172 18 6 7.1138 -8.5814 -1.2510 19 6 7.4052 -9.8612 -0.7624 20 6 6.6534 -10.9390 -1.1717 21 6 5.6097 -10.7598 -2.0728 22 8 4.8751 -11.8269 -2.4775 23 6 3.8173 -11.5724 -3.4040 24 9 2.9024 -10.6808 -2.8339 25 9 4.3456 -11.0146 -4.5732 26 6 5.3127 -9.4906 -2.5569 27 6 6.0580 -8.4059 -2.1541 28 6 5.9844 -3.6869 -0.3442 29 6 5.3556 -2.4669 -0.2410 30 1 -0.4850 0.8400 -0.0004 31 1 2.1454 -3.5226 0.0280 32 1 3.2556 -5.7053 -0.1652 33 1 7.9038 -5.3413 -0.4951 34 1 8.9799 -7.5272 -0.6882 35 1 8.2184 -10.0020 -0.0660 36 1 6.8776 -11.9263 -0.7959 37 1 3.3114 -12.5077 -3.6437 38 1 4.4985 -9.3563 -3.2537 39 1 5.8289 -7.4210 -2.5337 40 1 7.0586 -3.7348 -0.4448 41 1 5.9371 -1.5570 -0.2611 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000033466824.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:52 Heat of formation + Delta-G solvation = -136.334528 kcal Electronic energy + Delta-G solvation = -30293.516180 eV Core-core repulsion = 25547.766233 eV Total energy + Delta-G solvation = -4745.749947 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 360.101 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -50.36348 -48.37142 -41.53742 -40.95763 -40.30896 -38.54518 -37.80715 -34.58966 -34.55505 -32.10542 -32.07446 -31.66780 -30.06950 -27.62356 -27.11798 -25.58367 -24.07027 -23.66751 -23.35076 -22.07530 -20.30101 -20.07500 -19.49433 -19.37084 -19.09197 -18.92885 -17.89000 -17.18371 -16.97061 -16.57174 -16.05814 -15.92095 -15.81086 -15.72945 -15.57163 -15.56705 -15.08115 -15.00297 -14.71124 -14.59494 -14.55479 -14.43053 -14.33695 -14.10935 -14.06486 -13.87278 -13.45798 -13.29637 -13.12700 -12.92446 -12.58514 -12.52118 -12.30779 -11.97760 -11.97275 -11.40012 -10.98099 -10.70142 -10.62665 -9.97797 -9.93869 -9.21321 -8.84563 -8.57821 -6.31702 -0.66057 0.13987 0.43285 0.49755 0.90112 1.31216 1.35294 1.51380 1.59353 2.16148 2.23936 2.54263 2.75467 2.79638 2.93585 3.11953 3.41871 3.46419 3.64070 3.76041 3.79042 3.82106 3.95138 4.02190 4.23670 4.28030 4.39020 4.43519 4.52834 4.60331 4.68034 4.83518 4.96696 5.03226 5.06750 5.12754 5.20417 5.31967 5.37117 5.43867 5.52366 5.55313 5.65630 5.72991 5.78158 6.05189 6.07840 6.74286 6.80847 7.42632 8.53156 Molecular weight = 360.10amu Principal moments of inertia in cm(-1) A = 0.014502 B = 0.002102 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.361299 B =13314.937535 C =14803.153559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.013 3.987 3 Si 0.975 3.025 4 H -0.263 1.263 5 H -0.267 1.267 6 H -0.256 1.256 7 C -0.409 4.409 8 H 0.080 0.920 9 O -0.226 6.226 10 C 0.152 3.848 11 C -0.252 4.252 12 C -0.026 4.026 13 C -0.248 4.248 14 C 0.421 3.579 15 O -0.497 6.497 16 C -0.250 4.250 17 C 0.010 3.990 18 C -0.117 4.117 19 C -0.058 4.058 20 C -0.154 4.154 21 C 0.100 3.900 22 O -0.325 6.325 23 C 0.402 3.598 24 F -0.216 7.216 25 F -0.211 7.211 26 C -0.222 4.222 27 C -0.022 4.022 28 C -0.011 4.011 29 C -0.199 4.199 30 H 0.288 0.712 31 H 0.110 0.890 32 H 0.116 0.884 33 H 0.172 0.828 34 H 0.183 0.817 35 H 0.171 0.829 36 H 0.157 0.843 37 H 0.238 0.762 38 H 0.119 0.881 39 H 0.107 0.893 40 H 0.181 0.819 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.810 -22.301 -4.914 30.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.187 4.187 3 Si 0.796 3.204 4 H -0.188 1.188 5 H -0.192 1.192 6 H -0.180 1.180 7 C -0.484 4.484 8 H 0.097 0.903 9 O -0.131 6.131 10 C 0.100 3.900 11 C -0.272 4.272 12 C -0.044 4.044 13 C -0.250 4.250 14 C 0.308 3.692 15 O -0.380 6.380 16 C -0.268 4.268 17 C -0.008 4.008 18 C -0.118 4.118 19 C -0.076 4.076 20 C -0.173 4.173 21 C 0.057 3.943 22 O -0.243 6.243 23 C 0.313 3.687 24 F -0.198 7.198 25 F -0.193 7.193 26 C -0.240 4.240 27 C -0.040 4.040 28 C -0.029 4.029 29 C -0.218 4.218 30 H 0.098 0.902 31 H 0.127 0.873 32 H 0.134 0.866 33 H 0.190 0.810 34 H 0.200 0.800 35 H 0.188 0.812 36 H 0.174 0.826 37 H 0.254 0.746 38 H 0.137 0.863 39 H 0.125 0.875 40 H 0.198 0.802 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 19.345 -22.607 -4.844 30.145 hybrid contribution -1.557 1.149 -0.217 1.947 sum 17.787 -21.458 -5.061 28.328 Atomic orbital electron populations 1.69697 1.07224 1.30078 1.48545 1.25400 0.95901 1.02520 0.94837 0.85162 0.78963 0.76735 0.79549 1.18773 1.19154 1.18013 1.20751 0.77906 0.96289 1.53483 0.90269 1.83457 1.21444 1.27354 1.80861 1.19976 0.93546 0.84637 0.91807 1.21175 1.00474 0.92906 1.12610 1.21042 0.94869 0.96021 0.92490 1.20456 0.93586 0.96101 1.14817 1.19519 0.90620 0.86838 0.72225 1.90712 1.69569 1.36915 1.40846 1.22734 0.94481 1.00748 1.08799 1.22984 1.01049 0.89444 0.87316 1.19286 0.97755 0.94969 0.99752 1.21466 0.98850 0.89735 0.97552 1.20623 0.95640 1.01653 0.99352 1.19274 0.93269 0.85391 0.96354 1.86536 1.44283 1.33650 1.59799 1.24343 0.78698 0.91956 0.73653 1.93093 1.67880 1.73509 1.85293 1.93071 1.87291 1.88446 1.50466 1.21381 1.03857 0.92950 1.05858 1.20997 0.91880 0.96933 0.94183 1.21424 1.01085 0.88865 0.91485 1.20615 0.90089 1.00368 1.10690 0.90210 0.87253 0.86553 0.81032 0.79983 0.81206 0.82561 0.74606 0.86318 0.87515 0.80187 0.83350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.15 13.96 21.63 0.30 -53.84 16 2 C 0.01 0.75 5.50 84.87 0.47 1.22 16 3 Si 0.97 43.78 28.62 68.60 1.96 45.74 16 4 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 6 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 7 C -0.41 -23.77 9.94 67.94 0.68 -23.09 16 8 H 0.08 4.91 5.42 -2.91 -0.02 4.90 16 9 O -0.23 -11.83 8.57 -20.13 -0.17 -12.00 16 10 C 0.15 6.90 6.66 22.71 0.15 7.05 16 11 C -0.25 -11.53 9.14 22.35 0.20 -11.33 16 12 C -0.03 -1.02 9.59 22.51 0.22 -0.81 16 13 C -0.25 -8.09 5.88 -20.03 -0.12 -8.21 16 14 C 0.42 12.04 5.81 25.65 0.15 12.19 16 15 O -0.50 -17.17 12.07 -4.67 -0.06 -17.23 16 16 C -0.25 -4.56 9.17 22.46 0.21 -4.35 16 17 C 0.01 0.15 9.81 23.84 0.23 0.38 16 18 C -0.12 -2.48 4.60 -20.14 -0.09 -2.57 16 19 C -0.06 -1.00 9.79 22.57 0.22 -0.78 16 20 C -0.15 -2.95 9.97 22.32 0.22 -2.73 16 21 C 0.10 2.39 6.50 22.66 0.15 2.54 16 22 O -0.33 -6.46 10.42 -90.42 -0.94 -7.40 16 23 C 0.40 6.29 5.98 113.37 0.68 6.97 16 24 F -0.22 -4.92 15.55 44.97 0.70 -4.22 16 25 F -0.21 -4.12 15.58 44.97 0.70 -3.42 16 26 C -0.22 -6.09 8.23 22.32 0.18 -5.91 16 27 C -0.02 -0.58 6.64 22.57 0.15 -0.43 16 28 C -0.01 -0.30 9.42 22.51 0.21 -0.09 16 29 C -0.20 -6.89 9.97 22.35 0.22 -6.67 16 30 H 0.29 15.51 8.31 -92.71 -0.77 14.74 16 31 H 0.11 5.52 5.63 -2.91 -0.02 5.51 16 32 H 0.12 4.61 7.64 -2.91 -0.02 4.58 16 33 H 0.17 1.87 6.25 -2.91 -0.02 1.85 16 34 H 0.18 0.99 8.06 -2.91 -0.02 0.97 16 35 H 0.17 1.53 8.06 -2.91 -0.02 1.51 16 36 H 0.16 2.12 8.06 -2.91 -0.02 2.10 16 37 H 0.24 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.12 3.40 5.07 -2.91 -0.01 3.39 16 39 H 0.11 3.09 6.76 -2.91 -0.02 3.07 16 40 H 0.18 2.94 6.21 -2.91 -0.02 2.92 16 41 H 0.15 4.40 8.06 -2.91 -0.02 4.37 16 Total: -1.00 -77.80 360.34 7.73 -70.06 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: 1.11 Total: 18.91 kcal Atomic # 6 Polarization: -40.73 SS G_CDS: 4.13 Total: -36.60 kcal Atomic # 7 Polarization: -54.15 SS G_CDS: 0.30 Total: -53.84 kcal Atomic # 8 Polarization: -35.46 SS G_CDS: -1.17 Total: -36.63 kcal Atomic # 9 Polarization: -9.03 SS G_CDS: 1.40 Total: -7.63 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 1.96 Total: 45.74 kcal Total: -77.80 7.73 -70.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033466824.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.271 kcal (2) G-P(sol) polarization free energy of solvation -77.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds