Wall clock time and date at job start Tue Mar 31 2020 05:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86795 * 119.99549 * 2 1 4 4 H 1.48497 * 109.47568 * 270.00296 * 3 2 1 5 5 H 1.48498 * 109.47415 * 30.01069 * 3 2 1 6 6 H 1.48504 * 109.46817 * 150.00392 * 3 2 1 7 7 C 1.37874 * 120.00110 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00003 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00126 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47295 * 180.02562 * 9 7 2 11 11 S 1.81005 * 109.47241 * 179.97438 * 10 9 7 12 12 C 1.76199 * 99.99969 * 179.97438 * 11 10 9 13 13 N 1.32594 * 120.51737 * 359.97438 * 12 11 10 14 14 C 1.32032 * 121.12824 * 180.02562 * 13 12 11 15 15 N 1.31296 * 122.15003 * 359.97438 * 14 13 12 16 16 C 1.33998 * 121.08166 * 0.02562 * 15 14 13 17 17 S 1.75723 * 131.06218 * 179.97438 * 16 15 14 18 18 C 1.75314 * 92.36406 * 179.81449 * 17 16 15 19 19 C 1.33172 * 111.29672 * 0.34384 * 18 17 16 20 20 C 1.48235 * 122.79777 * 179.86330 * 19 18 17 21 21 C 1.39422 * 120.10067 * 309.70658 * 20 19 18 22 22 C 1.37975 * 119.89137 * 180.02562 * 21 20 19 23 23 C 1.38540 * 120.10832 * 0.02562 * 22 21 20 24 24 F 1.35102 * 119.89689 * 179.97438 * 23 22 21 25 25 C 1.38550 * 120.20639 * 0.02562 * 23 22 21 26 26 C 1.37972 * 120.10892 * 359.97438 * 25 23 22 27 27 C 1.39537 * 119.05703 * 0.02562 * 16 15 14 28 28 H 0.96995 * 119.99627 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.47537 * 59.99758 * 9 7 2 30 30 H 1.09003 * 109.46941 * 299.99919 * 9 7 2 31 31 H 1.08997 * 109.47077 * 59.99413 * 10 9 7 32 32 H 1.09007 * 109.47058 * 299.99314 * 10 9 7 33 33 H 1.08001 * 118.92929 * 180.02562 * 14 13 12 34 34 H 1.08009 * 124.35045 * 180.22754 * 18 17 16 35 35 H 1.08003 * 120.05798 * 0.02562 * 21 20 19 36 36 H 1.08009 * 119.94626 * 179.72600 * 22 21 20 37 37 H 1.08005 * 119.94307 * 179.97438 * 25 23 22 38 38 H 1.07991 * 120.05484 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 16 1.3405 -5.2296 0.0002 12 6 2.6903 -6.3621 -0.0007 13 7 3.9403 -5.9198 -0.0021 14 6 4.9607 -6.7577 -0.0033 15 7 4.7953 -8.0602 -0.0026 16 6 3.5697 -8.6019 -0.0012 17 16 3.0496 -10.2803 -0.0006 18 6 1.3550 -9.8309 0.0071 19 6 1.2056 -8.5076 0.0016 20 6 -0.1227 -7.8496 0.0031 21 6 -1.0945 -8.2339 -0.9198 22 6 -2.3293 -7.6182 -0.9148 23 6 -2.6039 -6.6192 0.0049 24 9 -3.8142 -6.0187 0.0057 25 6 -1.6410 -6.2331 0.9233 26 6 -0.4034 -6.8430 0.9261 27 6 2.4568 -7.7602 -0.0010 28 1 -0.4849 0.8400 0.0004 29 1 0.6242 -2.5567 -0.8902 30 1 0.6249 -2.5570 0.8897 31 1 2.8722 -3.6042 0.8894 32 1 2.8721 -3.6043 -0.8906 33 1 5.9643 -6.3586 -0.0041 34 1 0.5374 -10.5366 0.0134 35 1 -0.8813 -9.0124 -1.6374 36 1 -3.0812 -7.9121 -1.6322 37 1 -1.8595 -5.4535 1.6381 38 1 0.3464 -6.5417 1.6425 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036802576.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:10 Heat of formation + Delta-G solvation = 36.960786 kcal Electronic energy + Delta-G solvation = -25903.195566 eV Core-core repulsion = 22070.385972 eV Total energy + Delta-G solvation = -3832.809595 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 360.046 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -48.86317 -41.01610 -39.25022 -36.26920 -33.84260 -33.62029 -31.42527 -31.06290 -30.84858 -29.47514 -25.54896 -25.29259 -24.54172 -23.18170 -22.97985 -21.31028 -20.25975 -19.05567 -18.17521 -17.61817 -16.66698 -16.54314 -16.18010 -16.02901 -15.54669 -15.33340 -15.14908 -14.76258 -14.51413 -14.38933 -13.88523 -13.62555 -13.48852 -13.34585 -13.30402 -12.76271 -12.50732 -12.25093 -12.13147 -11.65274 -11.47398 -11.36534 -11.21056 -11.07758 -11.01885 -10.66954 -10.30346 -10.26697 -9.72787 -9.46835 -9.40696 -9.16722 -8.99606 -8.77503 -8.46635 -8.08744 -7.47323 -6.10529 -4.14812 0.14723 0.67917 0.87650 0.90827 1.10533 1.50961 1.74193 1.96465 2.73982 3.27402 3.33952 3.37431 3.49795 3.55966 4.08326 4.15377 4.23116 4.28058 4.39273 4.55507 4.68548 4.81683 4.86923 4.94136 5.15446 5.25490 5.28255 5.49526 5.73384 5.82386 5.89432 5.98550 6.00536 6.07395 6.17576 6.20469 6.33548 6.64999 6.68636 6.79252 7.45103 7.51862 7.84897 7.88150 8.22491 8.89748 9.49715 11.00191 Molecular weight = 360.05amu Principal moments of inertia in cm(-1) A = 0.008891 B = 0.003698 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3148.651105 B = 7569.418027 C =10528.177791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.896 3.104 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.519 4.519 8 H 0.059 0.941 9 C 0.036 3.964 10 C -0.105 4.105 11 S -0.013 6.013 12 C 0.212 3.788 13 N -0.523 5.523 14 C 0.330 3.670 15 N -0.510 5.510 16 C 0.102 3.898 17 S 0.167 5.833 18 C -0.197 4.197 19 C -0.014 4.014 20 C -0.056 4.056 21 C -0.069 4.069 22 C -0.158 4.158 23 C 0.111 3.889 24 F -0.138 7.138 25 C -0.143 4.143 26 C -0.047 4.047 27 C -0.168 4.168 28 H 0.263 0.737 29 H 0.025 0.975 30 H 0.025 0.975 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.205 0.795 34 H 0.180 0.820 35 H 0.133 0.867 36 H 0.136 0.864 37 H 0.142 0.858 38 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.150 -22.367 0.306 22.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.142 4.142 3 Si 0.724 3.276 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.559 4.559 8 H 0.078 0.922 9 C -0.003 4.003 10 C -0.253 4.253 11 S 0.236 5.764 12 C -0.052 4.052 13 N -0.244 5.244 14 C 0.035 3.965 15 N -0.229 5.229 16 C -0.150 4.150 17 S 0.427 5.573 18 C -0.332 4.332 19 C -0.027 4.027 20 C -0.060 4.060 21 C -0.088 4.088 22 C -0.177 4.177 23 C 0.091 3.909 24 F -0.117 7.117 25 C -0.163 4.163 26 C -0.071 4.071 27 C -0.188 4.188 28 H 0.073 0.927 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.221 0.779 34 H 0.197 0.803 35 H 0.150 0.850 36 H 0.154 0.846 37 H 0.160 0.840 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.158 -23.380 0.282 23.382 hybrid contribution 0.245 2.415 -0.105 2.430 sum 0.403 -20.965 0.178 20.969 Atomic orbital electron populations 1.69961 1.06063 1.26949 1.50041 1.25003 0.94896 0.99316 0.94969 0.86520 0.79823 0.83040 0.78229 1.20535 1.21101 1.19734 1.21069 0.93144 0.89997 1.51684 0.92237 1.18948 0.93305 0.89763 0.98248 1.24192 1.02274 0.93325 1.05474 1.86588 1.04660 0.99831 1.85288 1.24032 0.97129 0.93442 0.90567 1.68835 0.98208 1.39063 1.18248 1.24971 0.98682 0.83979 0.88845 1.68112 1.21797 1.14994 1.18041 1.23691 0.92198 0.99437 0.99680 1.84141 0.97014 0.99362 1.76746 1.25328 1.00350 0.98267 1.09284 1.18022 0.91071 0.91648 1.01949 1.18273 0.91669 0.97883 0.98126 1.20939 0.91559 0.99020 0.97255 1.20986 0.98577 0.97965 1.00204 1.17817 0.81310 0.94255 0.97504 1.91516 1.42041 1.82242 1.95870 1.21090 0.93031 1.01885 1.00269 1.20995 0.95528 0.92380 0.98153 1.20039 0.93690 0.94120 1.10929 0.92749 0.95705 0.95678 0.89778 0.89912 0.77905 0.80282 0.84953 0.84587 0.83989 0.83999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.07 13.29 55.43 0.74 -25.33 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.52 -14.24 9.11 -34.44 -0.31 -14.56 16 8 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 9 C 0.04 0.91 4.98 -27.89 -0.14 0.77 16 10 C -0.11 -2.16 4.81 37.16 0.18 -1.98 16 11 S -0.01 -0.22 15.92 -107.50 -1.71 -1.93 16 12 C 0.21 3.43 7.06 -15.88 -0.11 3.32 16 13 N -0.52 -8.48 9.27 -12.98 -0.12 -8.60 16 14 C 0.33 4.54 12.27 -92.38 -1.13 3.41 16 15 N -0.51 -7.24 10.47 -13.37 -0.14 -7.38 16 16 C 0.10 1.39 7.68 -16.12 -0.12 1.27 16 17 S 0.17 1.64 23.22 -107.50 -2.50 -0.86 16 18 C -0.20 -1.80 10.63 28.97 0.31 -1.49 16 19 C -0.01 -0.17 5.50 -104.56 -0.57 -0.74 16 20 C -0.06 -0.65 4.89 -104.91 -0.51 -1.17 16 21 C -0.07 -0.70 9.59 -39.24 -0.38 -1.07 16 22 C -0.16 -1.67 10.01 -39.57 -0.40 -2.07 16 23 C 0.11 1.40 7.30 -39.35 -0.29 1.11 16 24 F -0.14 -1.90 17.26 2.25 0.04 -1.86 16 25 C -0.14 -1.83 9.98 -39.56 -0.39 -2.23 16 26 C -0.05 -0.60 6.00 -39.24 -0.24 -0.83 16 27 C -0.17 -2.40 5.97 -105.08 -0.63 -3.03 16 28 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 29 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 1.72 8.14 -51.92 -0.42 1.30 16 32 H 0.08 1.72 8.14 -51.91 -0.42 1.30 16 33 H 0.20 2.02 8.06 -52.49 -0.42 1.60 16 34 H 0.18 1.07 8.06 -52.48 -0.42 0.64 16 35 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 36 H 0.14 1.14 8.06 -52.48 -0.42 0.72 16 37 H 0.14 1.74 8.06 -52.48 -0.42 1.32 16 38 H 0.14 1.83 6.76 -48.54 -0.33 1.50 16 LS Contribution 357.18 15.07 5.38 5.38 Total: -1.00 -31.04 357.18 -11.84 -42.88 By element: Atomic # 1 Polarization: 2.87 SS G_CDS: -3.67 Total: -0.80 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: -4.84 Total: -17.70 kcal Atomic # 7 Polarization: -41.78 SS G_CDS: 0.48 Total: -41.31 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.04 Total: -1.86 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: 1.42 SS G_CDS: -4.21 Total: -2.79 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.04 -11.84 -42.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036802576.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.841 kcal (2) G-P(sol) polarization free energy of solvation -31.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds