Wall clock time and date at job start Tue Mar 31 2020 05:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86795 * 119.99549 * 2 1 4 4 H 1.48497 * 109.47568 * 270.00296 * 3 2 1 5 5 H 1.48498 * 109.47415 * 30.01069 * 3 2 1 6 6 H 1.48504 * 109.46817 * 150.00392 * 3 2 1 7 7 C 1.37874 * 120.00110 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00003 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00126 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47295 * 180.02562 * 9 7 2 11 11 S 1.81005 * 109.47241 * 179.97438 * 10 9 7 12 12 C 1.76199 * 99.99969 * 179.97438 * 11 10 9 13 13 N 1.32594 * 120.51737 * 359.97438 * 12 11 10 14 14 C 1.32032 * 121.12824 * 180.02562 * 13 12 11 15 15 N 1.31296 * 122.15003 * 359.97438 * 14 13 12 16 16 C 1.33998 * 121.08166 * 0.02562 * 15 14 13 17 17 S 1.75723 * 131.06218 * 179.97438 * 16 15 14 18 18 C 1.75314 * 92.36406 * 179.81449 * 17 16 15 19 19 C 1.33172 * 111.29672 * 0.34384 * 18 17 16 20 20 C 1.48235 * 122.79777 * 179.86330 * 19 18 17 21 21 C 1.39422 * 120.10067 * 309.70658 * 20 19 18 22 22 C 1.37975 * 119.89137 * 180.02562 * 21 20 19 23 23 C 1.38540 * 120.10832 * 0.02562 * 22 21 20 24 24 F 1.35102 * 119.89689 * 179.97438 * 23 22 21 25 25 C 1.38550 * 120.20639 * 0.02562 * 23 22 21 26 26 C 1.37972 * 120.10892 * 359.97438 * 25 23 22 27 27 C 1.39537 * 119.05703 * 0.02562 * 16 15 14 28 28 H 0.96995 * 119.99627 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.47537 * 59.99758 * 9 7 2 30 30 H 1.09003 * 109.46941 * 299.99919 * 9 7 2 31 31 H 1.08997 * 109.47077 * 59.99413 * 10 9 7 32 32 H 1.09007 * 109.47058 * 299.99314 * 10 9 7 33 33 H 1.08001 * 118.92929 * 180.02562 * 14 13 12 34 34 H 1.08009 * 124.35045 * 180.22754 * 18 17 16 35 35 H 1.08003 * 120.05798 * 0.02562 * 21 20 19 36 36 H 1.08009 * 119.94626 * 179.72600 * 22 21 20 37 37 H 1.08005 * 119.94307 * 179.97438 * 25 23 22 38 38 H 1.07991 * 120.05484 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 16 1.3405 -5.2296 0.0002 12 6 2.6903 -6.3621 -0.0007 13 7 3.9403 -5.9198 -0.0021 14 6 4.9607 -6.7577 -0.0033 15 7 4.7953 -8.0602 -0.0026 16 6 3.5697 -8.6019 -0.0012 17 16 3.0496 -10.2803 -0.0006 18 6 1.3550 -9.8309 0.0071 19 6 1.2056 -8.5076 0.0016 20 6 -0.1227 -7.8496 0.0031 21 6 -1.0945 -8.2339 -0.9198 22 6 -2.3293 -7.6182 -0.9148 23 6 -2.6039 -6.6192 0.0049 24 9 -3.8142 -6.0187 0.0057 25 6 -1.6410 -6.2331 0.9233 26 6 -0.4034 -6.8430 0.9261 27 6 2.4568 -7.7602 -0.0010 28 1 -0.4849 0.8400 0.0004 29 1 0.6242 -2.5567 -0.8902 30 1 0.6249 -2.5570 0.8897 31 1 2.8722 -3.6042 0.8894 32 1 2.8721 -3.6043 -0.8906 33 1 5.9643 -6.3586 -0.0041 34 1 0.5374 -10.5366 0.0134 35 1 -0.8813 -9.0124 -1.6374 36 1 -3.0812 -7.9121 -1.6322 37 1 -1.8595 -5.4535 1.6381 38 1 0.3464 -6.5417 1.6425 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036802576.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:09 Heat of formation + Delta-G solvation = 22.182150 kcal Electronic energy + Delta-G solvation = -25903.836416 eV Core-core repulsion = 22070.385972 eV Total energy + Delta-G solvation = -3833.450444 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 360.046 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.87653 -42.05578 -40.16322 -37.20983 -35.81546 -34.79318 -32.95717 -32.30046 -31.94270 -30.40195 -27.44800 -26.32897 -25.73945 -24.11643 -23.88428 -23.17250 -21.16750 -20.14214 -19.22451 -18.70007 -18.60603 -17.57836 -17.19254 -16.98622 -16.56061 -16.54344 -16.44527 -16.29152 -15.70438 -15.59121 -15.22183 -15.04411 -14.55906 -14.31312 -14.16250 -14.06914 -13.77485 -13.54559 -13.37743 -13.22683 -12.98204 -12.57972 -12.50433 -12.38174 -12.13072 -12.08318 -11.97606 -11.76682 -11.67988 -11.18950 -10.62016 -10.43968 -10.39324 -9.94160 -9.77015 -9.03259 -8.70145 -8.24695 -6.37376 -0.83034 -0.40759 -0.11614 0.00444 0.13315 0.47863 0.75601 1.05739 1.27840 1.40432 1.40544 1.52199 2.39143 2.43733 2.61667 3.08608 3.10431 3.14862 3.31275 3.34649 3.55338 3.80772 3.94414 3.96310 4.03401 4.23732 4.29188 4.39672 4.42163 4.71464 4.84382 4.85157 4.96107 5.00154 5.03349 5.18240 5.26842 5.35342 5.43235 5.44689 5.58131 5.71459 5.89112 6.11084 6.75295 6.80370 7.31939 8.86475 Molecular weight = 360.05amu Principal moments of inertia in cm(-1) A = 0.008891 B = 0.003698 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3148.651105 B = 7569.418027 C =10528.177791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.006 3.994 3 Si 0.966 3.034 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.263 1.263 7 C -0.541 4.541 8 H 0.062 0.938 9 C 0.046 3.954 10 C -0.100 4.100 11 S 0.002 5.998 12 C 0.192 3.808 13 N -0.548 5.548 14 C 0.319 3.681 15 N -0.512 5.512 16 C 0.071 3.929 17 S 0.230 5.770 18 C -0.164 4.164 19 C -0.044 4.044 20 C -0.053 4.053 21 C -0.061 4.061 22 C -0.148 4.148 23 C 0.087 3.913 24 F -0.150 7.150 25 C -0.156 4.156 26 C -0.063 4.063 27 C -0.171 4.171 28 H 0.266 0.734 29 H -0.001 1.001 30 H 0.003 0.997 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.234 0.766 34 H 0.222 0.778 35 H 0.169 0.831 36 H 0.163 0.837 37 H 0.133 0.867 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.572 -25.421 -0.512 25.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.192 4.192 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.187 1.187 7 C -0.581 4.581 8 H 0.080 0.920 9 C 0.007 3.993 10 C -0.247 4.247 11 S 0.251 5.749 12 C -0.072 4.072 13 N -0.268 5.268 14 C 0.025 3.975 15 N -0.231 5.231 16 C -0.181 4.181 17 S 0.491 5.509 18 C -0.299 4.299 19 C -0.057 4.057 20 C -0.057 4.057 21 C -0.079 4.079 22 C -0.167 4.167 23 C 0.068 3.932 24 F -0.129 7.129 25 C -0.176 4.176 26 C -0.086 4.086 27 C -0.192 4.192 28 H 0.075 0.925 29 H 0.017 0.983 30 H 0.022 0.978 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.250 0.750 34 H 0.238 0.762 35 H 0.186 0.814 36 H 0.180 0.820 37 H 0.151 0.849 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.906 -26.441 -0.535 26.462 hybrid contribution 0.028 3.051 0.156 3.055 sum 0.935 -23.390 -0.379 23.412 Atomic orbital electron populations 1.70088 1.07729 1.28038 1.50939 1.25931 0.95763 1.03200 0.94346 0.85424 0.78682 0.78259 0.78580 1.19713 1.20527 1.18732 1.21501 0.93552 0.91465 1.51567 0.91997 1.18687 0.93433 0.91349 0.95812 1.23743 1.01264 0.95004 1.04690 1.86528 1.04318 0.97400 1.86691 1.23956 0.96839 0.94120 0.92289 1.68786 0.98791 1.40349 1.18869 1.25539 0.99267 0.83995 0.88696 1.68198 1.22213 1.15051 1.17602 1.24342 0.91840 1.01846 1.00068 1.84055 0.96395 0.95624 1.74813 1.25885 1.01512 0.97783 1.04688 1.17978 0.90032 0.92465 1.05180 1.18391 0.92165 0.97303 0.97859 1.21308 0.90543 0.99241 0.96843 1.21314 0.99433 0.96516 0.99441 1.18087 0.80991 0.95494 0.98628 1.91481 1.42656 1.82687 1.96035 1.21115 0.93642 1.02101 1.00711 1.20934 0.95167 0.93544 0.98963 1.20264 0.95328 0.93296 1.10267 0.92530 0.98273 0.97840 0.90350 0.90775 0.75022 0.76164 0.81378 0.81970 0.84886 0.85046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.09 13.29 21.45 0.28 -55.81 16 2 C 0.01 0.36 5.46 84.65 0.46 0.83 16 3 Si 0.97 44.15 29.54 68.60 2.03 46.17 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 6 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 7 C -0.54 -30.87 9.11 25.60 0.23 -30.63 16 8 H 0.06 3.41 7.74 -2.91 -0.02 3.38 16 9 C 0.05 2.43 4.98 29.85 0.15 2.58 16 10 C -0.10 -4.32 4.81 71.98 0.35 -3.98 16 11 S 0.00 0.08 15.92 -56.49 -0.90 -0.82 16 12 C 0.19 6.29 7.06 85.44 0.60 6.89 16 13 N -0.55 -18.03 9.27 -194.98 -1.81 -19.84 16 14 C 0.32 8.64 12.27 180.96 2.22 10.85 16 15 N -0.51 -13.81 10.47 -196.20 -2.05 -15.87 16 16 C 0.07 1.79 7.68 84.68 0.65 2.44 16 17 S 0.23 3.59 23.22 -56.49 -1.31 2.27 16 18 C -0.16 -2.21 10.63 66.68 0.71 -1.50 16 19 C -0.04 -0.93 5.50 -19.82 -0.11 -1.04 16 20 C -0.05 -1.16 4.89 -20.05 -0.10 -1.25 16 21 C -0.06 -1.04 9.59 22.49 0.22 -0.82 16 22 C -0.15 -2.82 10.01 22.28 0.22 -2.60 16 23 C 0.09 2.22 7.30 22.42 0.16 2.38 16 24 F -0.15 -4.22 17.26 44.97 0.78 -3.44 16 25 C -0.16 -4.20 9.98 22.28 0.22 -3.98 16 26 C -0.06 -1.61 6.00 22.49 0.13 -1.47 16 27 C -0.17 -4.69 5.97 -20.16 -0.12 -4.81 16 28 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 29 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 30 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 31 H 0.08 3.41 8.14 -2.40 -0.02 3.39 16 32 H 0.07 3.27 8.14 -2.39 -0.02 3.25 16 33 H 0.23 4.43 8.06 -2.91 -0.02 4.40 16 34 H 0.22 1.14 8.06 -2.91 -0.02 1.11 16 35 H 0.17 1.64 8.06 -2.91 -0.02 1.62 16 36 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 37 H 0.13 3.64 8.06 -2.91 -0.02 3.62 16 38 H 0.13 3.60 6.76 -5.43 -0.04 3.56 16 Total: -1.00 -70.54 357.18 4.12 -66.42 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: 1.10 Total: 7.02 kcal Atomic # 6 Polarization: -32.12 SS G_CDS: 6.00 Total: -26.11 kcal Atomic # 7 Polarization: -87.93 SS G_CDS: -3.58 Total: -91.51 kcal Atomic # 9 Polarization: -4.22 SS G_CDS: 0.78 Total: -3.44 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Atomic # 16 Polarization: 3.66 SS G_CDS: -2.21 Total: 1.45 kcal Total: -70.54 4.12 -66.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036802576.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.602 kcal (2) G-P(sol) polarization free energy of solvation -70.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds