Wall clock time and date at job start Tue Mar 31 2020 06:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99658 * 2 1 4 4 H 1.48502 * 109.47427 * 269.99699 * 3 2 1 5 5 H 1.48497 * 109.47618 * 30.00124 * 3 2 1 6 6 H 1.48507 * 109.47015 * 149.99754 * 3 2 1 7 7 C 1.37871 * 120.00020 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00001 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99973 * 180.02562 * 7 2 1 10 10 N 1.46897 * 109.47403 * 179.97438 * 9 7 2 11 11 C 1.46952 * 111.00146 * 169.99618 * 10 9 7 12 12 C 1.53058 * 109.36414 * 183.18846 * 11 10 9 13 13 N 1.46961 * 109.36200 * 301.60054 * 12 11 10 14 14 C 1.46906 * 110.99523 * 183.18976 * 13 12 11 15 15 C 1.50699 * 109.46704 * 170.00464 * 14 13 12 16 16 C 1.33616 * 125.12582 * 89.99680 * 15 14 13 17 17 C 1.37968 * 115.06466 * 180.02562 * 16 15 14 18 18 C 1.34790 * 114.70482 * 359.97438 * 17 16 15 19 19 C 1.47832 * 125.27060 * 179.97438 * 18 17 16 20 20 C 1.39600 * 120.12904 * 0.25978 * 19 18 17 21 21 C 1.37953 * 119.90635 * 180.25426 * 20 19 18 22 22 C 1.38338 * 120.16644 * 359.73773 * 21 20 19 23 23 C 1.38554 * 120.26726 * 0.02562 * 22 21 20 24 24 F 1.35103 * 119.95201 * 180.02562 * 23 22 21 25 25 C 1.38210 * 120.09645 * 359.97438 * 23 22 21 26 26 S 1.75864 * 125.11550 * 270.32170 * 15 14 13 27 27 C 1.46958 * 110.88044 * 59.32267 * 13 12 11 28 28 C 1.46962 * 111.00039 * 293.79822 * 10 9 7 29 29 H 0.97006 * 120.00202 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.47214 * 59.99693 * 9 7 2 31 31 H 1.08996 * 109.47022 * 299.99744 * 9 7 2 32 32 H 1.08998 * 109.49005 * 63.22681 * 11 10 9 33 33 H 1.08993 * 109.49143 * 303.15586 * 11 10 9 34 34 H 1.08999 * 109.49197 * 181.63561 * 12 11 10 35 35 H 1.08997 * 109.48696 * 61.56469 * 12 11 10 36 36 H 1.08993 * 109.47213 * 49.99710 * 14 13 12 37 37 H 1.09007 * 109.46672 * 289.99567 * 14 13 12 38 38 H 1.07998 * 122.46414 * 359.97438 * 16 15 14 39 39 H 1.07992 * 122.64548 * 180.02562 * 17 16 15 40 40 H 1.08010 * 120.04981 * 359.97438 * 20 19 18 41 41 H 1.07994 * 119.91654 * 179.72650 * 21 20 19 42 42 H 1.08000 * 119.86509 * 179.97438 * 22 21 20 43 43 H 1.08002 * 120.08557 * 179.97438 * 25 23 22 44 44 H 1.08994 * 109.48830 * 60.64516 * 27 13 12 45 45 H 1.08999 * 109.48472 * 180.71295 * 27 13 12 46 46 H 1.09001 * 109.48563 * 296.77897 * 28 10 9 47 47 H 1.09006 * 109.48841 * 56.84178 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 7 4.0013 -2.5789 -0.0001 11 6 5.4507 -2.6250 -0.2378 12 6 5.9071 -4.0842 -0.3096 13 7 5.5602 -4.7655 0.9455 14 6 6.0500 -6.1505 0.9453 15 6 5.8973 -6.7373 2.3249 16 6 4.8189 -7.3904 2.7676 17 6 4.9018 -7.8409 4.0690 18 6 6.0612 -7.5516 4.6926 19 6 6.3974 -7.9209 6.0840 20 6 5.4810 -8.6314 6.8613 21 6 5.7974 -8.9691 8.1609 22 6 7.0225 -8.6101 8.6938 23 6 7.9393 -7.9091 7.9271 24 9 9.1340 -7.5622 8.4538 25 6 7.6337 -7.5652 6.6238 26 16 7.1086 -6.6586 3.5975 27 6 4.1107 -4.7194 1.1832 28 6 3.6544 -3.2603 1.2550 29 1 -0.4851 0.8401 -0.0004 30 1 3.8745 -0.6807 0.8904 31 1 3.8752 -0.6796 -0.8894 32 1 5.9693 -2.1216 0.5781 33 1 5.6810 -2.1253 -1.1787 34 1 6.9865 -4.1208 -0.4570 35 1 5.4089 -4.5804 -1.1425 36 1 7.1015 -6.1640 0.6589 37 1 5.4719 -6.7401 0.2337 38 1 3.9464 -7.5529 2.1522 39 1 4.1012 -8.3833 4.5498 40 1 4.5238 -8.9125 6.4473 41 1 5.0869 -9.5149 8.7638 42 1 7.2650 -8.8766 9.7120 43 1 8.3482 -7.0184 6.0264 44 1 3.5923 -5.2229 0.3673 45 1 3.8805 -5.2191 2.1241 46 1 4.1525 -2.7640 2.0879 47 1 2.5750 -3.2237 1.4024 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040086141.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:44 Heat of formation + Delta-G solvation = 29.656578 kcal Electronic energy + Delta-G solvation = -28233.384489 eV Core-core repulsion = 24229.171478 eV Total energy + Delta-G solvation = -4004.213011 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 360.137 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.25763 -39.63057 -39.08443 -37.66683 -35.32021 -32.87014 -32.28618 -31.09895 -30.53092 -29.98726 -28.07475 -26.28108 -24.54194 -23.46759 -23.23071 -22.60362 -22.19040 -21.05127 -19.48201 -19.12392 -17.91226 -17.01967 -16.81297 -16.57980 -16.21841 -15.96833 -15.91441 -15.55113 -14.90654 -14.49317 -14.44956 -14.33275 -14.12862 -13.82276 -13.62221 -13.45850 -13.39653 -13.35463 -12.83189 -12.50259 -12.36513 -12.17803 -12.10875 -11.91709 -11.84874 -11.61384 -11.39619 -10.97936 -10.85192 -10.83282 -10.60196 -10.41715 -10.09862 -9.96288 -9.82978 -9.27732 -9.24915 -8.64252 -8.57588 -8.37515 -8.15091 -7.37883 -6.06089 -4.03440 0.08351 0.76132 1.26435 1.35586 1.79436 2.51608 3.28130 3.29535 3.35707 3.38210 3.75512 4.04757 4.18852 4.38211 4.41569 4.58053 4.64270 4.67337 4.76307 4.87192 4.96321 5.16218 5.21092 5.26187 5.30192 5.38175 5.43348 5.47634 5.60048 5.64261 5.66488 5.73041 5.77173 5.83752 5.85401 5.98374 6.01145 6.06954 6.09271 6.28072 6.28879 6.43162 6.48368 6.62857 6.82674 6.96209 7.07633 7.19023 7.58763 7.89734 8.03912 8.64877 9.01550 9.55794 11.06927 Molecular weight = 360.14amu Principal moments of inertia in cm(-1) A = 0.013631 B = 0.001950 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.651983 B =14354.885395 C =14928.396873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.068 3.932 3 Si 0.875 3.125 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.509 4.509 8 H 0.080 0.920 9 C 0.162 3.838 10 N -0.529 5.529 11 C 0.054 3.946 12 C 0.062 3.938 13 N -0.536 5.536 14 C 0.121 3.879 15 C -0.150 4.150 16 C -0.139 4.139 17 C -0.107 4.107 18 C -0.169 4.169 19 C 0.026 3.974 20 C -0.117 4.117 21 C -0.083 4.083 22 C -0.159 4.159 23 C 0.107 3.893 24 F -0.138 7.138 25 C -0.153 4.153 26 S 0.145 5.855 27 C 0.056 3.944 28 C 0.068 3.932 29 H 0.263 0.737 30 H -0.011 1.011 31 H 0.024 0.976 32 H 0.031 0.969 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.043 0.957 36 H 0.083 0.917 37 H 0.056 0.944 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.134 0.866 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.135 0.865 44 H 0.041 0.959 45 H 0.075 0.925 46 H 0.029 0.971 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.790 -21.052 12.496 29.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.702 3.298 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.547 4.547 8 H 0.098 0.902 9 C 0.036 3.964 10 N -0.254 5.254 11 C -0.075 4.075 12 C -0.066 4.066 13 N -0.261 5.261 14 C -0.009 4.009 15 C -0.269 4.269 16 C -0.169 4.169 17 C -0.138 4.138 18 C -0.287 4.287 19 C 0.024 3.976 20 C -0.137 4.137 21 C -0.101 4.101 22 C -0.178 4.178 23 C 0.088 3.912 24 F -0.117 7.117 25 C -0.173 4.173 26 S 0.413 5.587 27 C -0.072 4.072 28 C -0.061 4.061 29 H 0.073 0.927 30 H 0.007 0.993 31 H 0.042 0.958 32 H 0.050 0.950 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.061 0.939 36 H 0.101 0.899 37 H 0.074 0.926 38 H 0.160 0.840 39 H 0.159 0.841 40 H 0.152 0.848 41 H 0.155 0.845 42 H 0.154 0.846 43 H 0.152 0.848 44 H 0.059 0.941 45 H 0.094 0.906 46 H 0.047 0.953 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 17.153 -20.240 12.562 29.355 hybrid contribution -0.852 0.525 -0.012 1.001 sum 16.301 -19.715 12.550 28.494 Atomic orbital electron populations 1.69896 1.06110 1.26838 1.51109 1.24901 0.94747 0.98872 0.94845 0.86862 0.80330 0.84005 0.78565 1.20165 1.21204 1.19265 1.21017 0.88707 0.94673 1.50300 0.90204 1.20152 0.97064 0.84079 0.95091 1.62118 1.10284 1.19113 1.33894 1.22109 0.90302 0.94591 1.00513 1.22155 0.99547 0.95109 0.89766 1.62209 1.15558 1.13154 1.35188 1.20528 1.01123 0.89374 0.89831 1.24554 0.98000 1.04301 1.00043 1.20030 0.99218 1.01567 0.96101 1.20251 0.97190 1.01862 0.94539 1.22845 0.99822 1.08782 0.97202 1.17828 0.92983 0.96318 0.90483 1.21277 0.99644 0.98777 0.93999 1.20952 0.95762 0.98415 0.95003 1.21223 0.94434 1.01171 1.00940 1.17510 0.82108 0.99292 0.92298 1.91519 1.43327 1.90292 1.86548 1.21169 0.97855 1.03652 0.94619 1.84139 1.18577 1.52872 1.03107 1.22319 0.85960 0.98263 1.00642 1.22019 1.01775 0.91621 0.90659 0.92671 0.99321 0.95817 0.95048 0.90861 0.91016 0.93911 0.89876 0.92602 0.84001 0.84095 0.84792 0.84518 0.84584 0.84757 0.94096 0.90619 0.95308 0.88981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.51 13.96 55.43 0.77 -26.74 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 21.56 27.47 -169.99 -4.67 16.89 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 7 C -0.51 -14.40 9.03 -34.44 -0.31 -14.71 16 8 H 0.08 2.45 7.37 -52.48 -0.39 2.06 16 9 C 0.16 3.96 3.79 -4.98 -0.02 3.94 16 10 N -0.53 -11.08 4.70 -235.91 -1.11 -12.18 16 11 C 0.05 0.92 5.61 -3.77 -0.02 0.90 16 12 C 0.06 0.86 5.61 -3.76 -0.02 0.84 16 13 N -0.54 -7.45 4.70 -235.90 -1.11 -8.56 16 14 C 0.12 1.33 5.45 -4.97 -0.03 1.31 16 15 C -0.15 -1.65 5.45 -35.93 -0.20 -1.84 16 16 C -0.14 -1.42 8.50 -41.30 -0.35 -1.77 16 17 C -0.11 -1.02 9.65 -40.90 -0.39 -1.42 16 18 C -0.17 -1.72 6.37 -36.88 -0.24 -1.96 16 19 C 0.03 0.24 5.87 -104.99 -0.62 -0.37 16 20 C -0.12 -0.89 9.54 -39.18 -0.37 -1.26 16 21 C -0.08 -0.54 10.03 -39.65 -0.40 -0.93 16 22 C -0.16 -1.17 10.02 -39.43 -0.40 -1.56 16 23 C 0.11 0.99 7.29 -39.48 -0.29 0.71 16 24 F -0.14 -1.40 17.26 2.25 0.04 -1.36 16 25 C -0.15 -1.48 9.58 -39.12 -0.37 -1.85 16 26 S 0.14 1.53 22.24 -107.50 -2.39 -0.87 16 27 C 0.06 0.86 5.36 -3.77 -0.02 0.84 16 28 C 0.07 1.32 5.43 -3.77 -0.02 1.30 16 29 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 30 H -0.01 -0.27 7.18 -51.93 -0.37 -0.65 16 31 H 0.02 0.58 7.45 -51.93 -0.39 0.19 16 32 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 34 H 0.07 0.83 8.07 -51.93 -0.42 0.41 16 35 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.81 8.03 -51.93 -0.42 0.40 16 37 H 0.06 0.58 8.12 -51.93 -0.42 0.16 16 38 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 39 H 0.14 1.03 6.89 -52.49 -0.36 0.67 16 40 H 0.13 0.77 6.76 -52.48 -0.35 0.41 16 41 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 42 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 43 H 0.13 1.24 7.28 -52.49 -0.38 0.86 16 44 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.08 1.09 6.12 -51.93 -0.32 0.77 16 46 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.09 1.98 6.79 -51.93 -0.35 1.62 16 LS Contribution 392.31 15.07 5.91 5.91 Total: -1.00 -31.49 392.31 -13.43 -44.92 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -6.72 Total: -2.04 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: -4.16 Total: -15.98 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: -1.44 Total: -47.49 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.04 Total: -1.36 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Atomic # 16 Polarization: 1.53 SS G_CDS: -2.39 Total: -0.87 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.49 -13.43 -44.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040086141.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.578 kcal (2) G-P(sol) polarization free energy of solvation -31.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds